FFCP PHASE1:Mm9::chr7:134094032..134094097,+: Difference between revisions
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{{FFCP|EntrezGene=233878|HGNC=|MCL_coexpression_id=1|UniProt=Q4V9Z5,D3YY14|association_with_transcript=0bp_to_ENSMUST00000032921,ENSMUST00000106335,ENSMUST00000146017,ENSMUST00000164305,NM_001252566,NM_001252567,NM_144926_5end|description=CAGE_peak_1_at_Sez6l2_5end|id=chr7:134094032..134094097,+|ontology_enrichment_celltype=CL:0000540!1.87e-13!33;CL:0000047!1.87e-13!33;CL:0000031!1.87e-13!33;CL:0000404!1.87e-13!33;CL:0000117!1.64e-12!23;CL:0000337!1.64e-12!23;CL:0002319!1.34e-08!43;CL:0000221!1.59e-08!44;CL:0000133!1.59e-08!44;CL:0000393!5.30e-08!39;CL:0000211!5.30e-08!39|ontology_enrichment_celltype_v019_2=CL:0000540,3.44e-14,33;CL:0000047,3.44e-14,33;CL:0000031,3.44e-14,33;CL:0000404,3.44e-14,33;CL:0000117,3.46e-13,23;CL:0000337,3.46e-13,23;CL:0002319,2.12e-09,43;CL:0000393,2.21e-09,39;CL:0000211,2.21e-09,39;CL:0000221,2.57e-09,44;CL:0000133,2.57e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!9.00e-29!71;UBERON:0003075!9.00e-29!71;UBERON:0007284!9.00e-29!71;UBERON:0001017!2.07e-26!73;UBERON:0005743!2.07e-26!73;UBERON:0004121!2.14e-26!102;UBERON:0000924!2.14e-26!102;UBERON:0006601!2.14e-26!102;UBERON:0000073!2.83e-26!75;UBERON:0001016!2.83e-26!75;UBERON:0001049!8.80e-24!52;UBERON:0005068!8.80e-24!52;UBERON:0006241!8.80e-24!52;UBERON:0007135!8.80e-24!52;UBERON:0000033!1.05e-23!63;UBERON:0000955!8.14e-23!50;UBERON:0006238!8.14e-23!50;UBERON:0002616!3.05e-22!49;UBERON:0003056!1.45e-20!49;UBERON:0003080!1.06e-18!40;UBERON:0002780!4.56e-18!39;UBERON:0001890!4.56e-18!39;UBERON:0006240!4.56e-18!39;UBERON:0002020!1.30e-16!34;UBERON:0002791!6.35e-14!29;UBERON:0003528!6.35e-14!29;UBERON:0001893!6.35e-14!29;UBERON:0007811!6.85e-11!86;UBERON:0000468!4.16e-10!333;UBERON:0000956!8.57e-10!21;UBERON:0001869!8.57e-10!21;UBERON:0000203!8.57e-10!21;UBERON:0000153!5.54e-09!94;UBERON:0002021!3.34e-08!10;UBERON:0000411!3.34e-08!10;UBERON:0001950!3.34e-08!10;UBERON:0002619!6.26e-08!17;UBERON:0000922!5.87e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.71e-28,73;UBERON:0002346,1.95e-28,64;UBERON:0003075,1.95e-28,64;UBERON:0007284,1.95e-28,64;UBERON:0001016,2.43e-28,75;UBERON:0000073,7.49e-27,54;UBERON:0010314,1.55e-25,92;UBERON:0001049,2.32e-25,52;UBERON:0005068,2.32e-25,52;UBERON:0006241,2.32e-25,52;UBERON:0007135,2.32e-25,52;UBERON:0004121,7.72e-25,95;UBERON:0000924,7.72e-25,95;UBERON:0006601,7.72e-25,95;UBERON:0010371,1.38e-22,73;UBERON:0000955,3.21e-22,47;UBERON:0006238,3.21e-22,47;UBERON:0003056,6.21e-22,49;UBERON:0002616,1.27e-21,46;UBERON:0003080,5.83e-20,40;UBERON:0002780,2.76e-19,39;UBERON:0001890,2.76e-19,39;UBERON:0006240,2.76e-19,39;UBERON:0002020,9.65e-18,34;UBERON:0003528,6.97e-15,29;UBERON:0002791,6.97e-15,29;UBERON:0001893,6.97e-15,29;UBERON:0000956,1.73e-10,21;UBERON:0001869,1.73e-10,21;UBERON:0000203,1.73e-10,21;UBERON:0002021,1.30e-08,10;UBERON:0000411,1.30e-08,10;UBERON:0001950,1.30e-08,10;UBERON:0002619,1.66e-08,17|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,2.68606835059024,5.60670337429262,0,0,0,0,0.0797721589953364,0,0,0,0,0,0.157731082679119,0,0,60.8059524580149,0.0992909512008853,0,1.59992422793407,2.52350209173887,0,0,0.430942465371778,1.14014051673824,0,2.43903561720835,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,1.56478268869608,1.52617609466313,0,0.194429899074283,0,0,0,0,0,0,0,0,139.396041532263,168.748122387778,151.485705437977,0,0.889294796111139,0.449949858640699,5.93319817540185,0.7104801149461,0.299600110518405,3.84218305321555,62.0063881604696,80.8685570606827,72.141461743524,203.097849911104,187.296522726968,69.8197555525238,68.9128936621119,91.9218786610021,301.717513938325,290.871756158058,265.585696000045,175.408762681158,171.539331754518,154.190357684801,219.437837215085,175.019171719852,214.834336374195,215.078867395777,192.486512440387,160.303523409758,2.87759534666099,8.53958629206676,1.73918693221007,0.860423876981386,0,1.61910957491345,0,0,12.6399978118577,0.170430322578058,0,0,3.38024207464033,0,0,0,0,0,0,7.4219521817389,3.10725460376606,31.1728492036132,14.052311468057,25.2706346999077,17.7573932887165,21.8547828801303,31.3961848052332,16.3366568728578,0.247194967734374,2.02439099687876,0,3.07357014900077,1.98757366614354,0.969750506270444,5.59175283654366,351.92251800788,268.301231428036,2.04365644166873,0,0,0,285.650749344997,251.167830947426,162.094114225595,372.853166812433,344.448721023955,290.487686294265,261.695157328293,1.12023300235348,0.622034853050465,0.252722758433675,27.3574412652416,2.21204753036596,7.58676944630461,18.9065236295617,16.2761203262572,29.7319501291303,31.515975190073,28.0168156433589,71.9195370654463,0.215567992932842,0.378212160335639,0.175951124163949,0.876782929710299,1.11218899690239,0.696504333044333,0.823128545631774,0.995171334092466,0,0.257347907114715,0,0,0.703578179943289,0.720248245844059,3.78791576936336,3.93528463494808,3.23960937063494,4.88321283975857,5.09719462659276,5.3712057488898,5.75959474697182,18.0584210487005,23.9152988160274,12.280798943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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:233878 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q4V9Z5,uniprot:D3YY14 | |||
|association_with_transcript=0bp_to_ENSMUST00000032921,ENSMUST00000106335,ENSMUST00000146017,ENSMUST00000164305,NM_001252566,NM_001252567,NM_144926_5end | |||
|cluster_id=chr7:134094032..134094097,+ | |||
|description=CAGE_peak_1_at_Sez6l2_5end | |||
|id=chr7:134094032..134094097,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.87e-13!33;CL:0000047!1.87e-13!33;CL:0000031!1.87e-13!33;CL:0000404!1.87e-13!33;CL:0000117!1.64e-12!23;CL:0000337!1.64e-12!23;CL:0002319!1.34e-08!43;CL:0000221!1.59e-08!44;CL:0000133!1.59e-08!44;CL:0000393!5.30e-08!39;CL:0000211!5.30e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.44e-14,33;CL:0000047,3.44e-14,33;CL:0000031,3.44e-14,33;CL:0000404,3.44e-14,33;CL:0000117,3.46e-13,23;CL:0000337,3.46e-13,23;CL:0002319,2.12e-09,43;CL:0000393,2.21e-09,39;CL:0000211,2.21e-09,39;CL:0000221,2.57e-09,44;CL:0000133,2.57e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!9.00e-29!71;UBERON:0003075!9.00e-29!71;UBERON:0007284!9.00e-29!71;UBERON:0001017!2.07e-26!73;UBERON:0005743!2.07e-26!73;UBERON:0004121!2.14e-26!102;UBERON:0000924!2.14e-26!102;UBERON:0006601!2.14e-26!102;UBERON:0000073!2.83e-26!75;UBERON:0001016!2.83e-26!75;UBERON:0001049!8.80e-24!52;UBERON:0005068!8.80e-24!52;UBERON:0006241!8.80e-24!52;UBERON:0007135!8.80e-24!52;UBERON:0000033!1.05e-23!63;UBERON:0000955!8.14e-23!50;UBERON:0006238!8.14e-23!50;UBERON:0002616!3.05e-22!49;UBERON:0003056!1.45e-20!49;UBERON:0003080!1.06e-18!40;UBERON:0002780!4.56e-18!39;UBERON:0001890!4.56e-18!39;UBERON:0006240!4.56e-18!39;UBERON:0002020!1.30e-16!34;UBERON:0002791!6.35e-14!29;UBERON:0003528!6.35e-14!29;UBERON:0001893!6.35e-14!29;UBERON:0007811!6.85e-11!86;UBERON:0000468!4.16e-10!333;UBERON:0000956!8.57e-10!21;UBERON:0001869!8.57e-10!21;UBERON:0000203!8.57e-10!21;UBERON:0000153!5.54e-09!94;UBERON:0002021!3.34e-08!10;UBERON:0000411!3.34e-08!10;UBERON:0001950!3.34e-08!10;UBERON:0002619!6.26e-08!17;UBERON:0000922!5.87e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.71e-28,73;UBERON:0002346,1.95e-28,64;UBERON:0003075,1.95e-28,64;UBERON:0007284,1.95e-28,64;UBERON:0001016,2.43e-28,75;UBERON:0000073,7.49e-27,54;UBERON:0010314,1.55e-25,92;UBERON:0001049,2.32e-25,52;UBERON:0005068,2.32e-25,52;UBERON:0006241,2.32e-25,52;UBERON:0007135,2.32e-25,52;UBERON:0004121,7.72e-25,95;UBERON:0000924,7.72e-25,95;UBERON:0006601,7.72e-25,95;UBERON:0010371,1.38e-22,73;UBERON:0000955,3.21e-22,47;UBERON:0006238,3.21e-22,47;UBERON:0003056,6.21e-22,49;UBERON:0002616,1.27e-21,46;UBERON:0003080,5.83e-20,40;UBERON:0002780,2.76e-19,39;UBERON:0001890,2.76e-19,39;UBERON:0006240,2.76e-19,39;UBERON:0002020,9.65e-18,34;UBERON:0003528,6.97e-15,29;UBERON:0002791,6.97e-15,29;UBERON:0001893,6.97e-15,29;UBERON:0000956,1.73e-10,21;UBERON:0001869,1.73e-10,21;UBERON:0000203,1.73e-10,21;UBERON:0002021,1.30e-08,10;UBERON:0000411,1.30e-08,10;UBERON:0001950,1.30e-08,10;UBERON:0002619,1.66e-08,17 | |||
|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,2.68606835059024,5.60670337429262,0,0,0,0,0.0797721589953364,0,0,0,0,0,0.157731082679119,0,0,60.8059524580149,0.0992909512008853,0,1.59992422793407,2.52350209173887,0,0,0.430942465371778,1.14014051673824,0,2.43903561720835,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,1.56478268869608,1.52617609466313,0,0.194429899074283,0,0,0,0,0,0,0,0,139.396041532263,168.748122387778,151.485705437977,0,0.889294796111139,0.449949858640699,5.93319817540185,0.7104801149461,0.299600110518405,3.84218305321555,62.0063881604696,80.8685570606827,72.141461743524,203.097849911104,187.296522726968,69.8197555525238,68.9128936621119,91.9218786610021,301.717513938325,290.871756158058,265.585696000045,175.408762681158,171.539331754518,154.190357684801,219.437837215085,175.019171719852,214.834336374195,215.078867395777,192.486512440387,160.303523409758,2.87759534666099,8.53958629206676,1.73918693221007,0.860423876981386,0,1.61910957491345,0,0,12.6399978118577,0.170430322578058,0,0,3.38024207464033,0,0,0,0,0,0,7.4219521817389,3.10725460376606,31.1728492036132,14.052311468057,25.2706346999077,17.7573932887165,21.8547828801303,31.3961848052332,16.3366568728578,0.247194967734374,2.02439099687876,0,3.07357014900077,1.98757366614354,0.969750506270444,5.59175283654366,351.92251800788,268.301231428036,2.04365644166873,0,0,0,285.650749344997,251.167830947426,162.094114225595,372.853166812433,344.448721023955,290.487686294265,261.695157328293,1.12023300235348,0.622034853050465,0.252722758433675,27.3574412652416,2.21204753036596,7.58676944630461,18.9065236295617,16.2761203262572,29.7319501291303,31.515975190073,28.0168156433589,71.9195370654463,0.215567992932842,0.378212160335639,0.175951124163949,0.876782929710299,1.11218899690239,0.696504333044333,0.823128545631774,0.995171334092466,0,0.257347907114715,0,0,0.703578179943289,0.720248245844059,3.78791576936336,3.93528463494808,3.23960937063494,4.88321283975857,5.09719462659276,5.3712057488898,5.75959474697182,18.0584210487005,23.9152988160274,12.2807989437279,18.0031094538662,15.9705638324842,341.721166416707,140.464795897723,0.991256348951394,1.85115396664481,2.34617075588757,3.48355007790658,9.14958975386863,7.26060688644033,6.22658522765637,6.46767128782701,1.42358718463353,6.0938613247884,3.77002813200404,5.76973768919337,6.04388670069272,2.69645822596266,1.72910439899755,3.98282546508734,3.22435431620239,6.28366819353509,2.25415471346161,2.8511185898344,2.32742984601151,4.20814919341911,3.16182685621286,1.18088118383682,0.784993639206874,0.616985819609003,0,0.166845105716094,0.589676985339609,0.224862112384854,0,0.482354319504834,0.50925170356284,0.287696137450811,0.810676133875177,0.274561413188081,5.75072826109418,0.744281895337007,3.43241440426017,1.26289438973556,0.896987067609561,0.482443521363367,0.369506380333209,0.37898282354097,1.30371981153621,0.509235257325564,0.938760993154008,1.17254380209271,0.714130922658041,1.75620283072019,0.630540576424764,0.44292937929755,0.637819074629948,1.14704320301017,0.518054945597687,0.433947175744535,0,0,0,0.551873492609465,242.591941471554,214.731809836916,6.72133276044369,4.03953483526997,16.0909191902291,19.1314984705353,34.0368968417822,5.9742199488138,12.2539270745317,12.4553673547086,14.1683745586213,31.855888512333,31.2277344577754,187.009006157492,1.70328102249922,2.13678724400706,2.11753047159649,0.659880491890142,7.96470830039777,11.8962511715941,11.4882951646605,14.3339860614483,24.8053590019849,22.7502009478506,16.2809824695979,13.0872142611902,18.8943610543902,8.53299246426703,9.48767477174989,2.06271086496374,343.163122599818,6.48219938512717,12.6771510107099,27.4351404840438,94.1676640640473,105.415971202824,113.703373236066,250.270188172201,5.63212099352905,0.21183207086382,2.8668691747145,0.65954501176592,0.968786560175433,1.20625849856312,1.07435109602823,0.820704498725306,2.91480836629851,243.463421539799,0.170870880797853,1.65109494370578,0.370389054739423,0.188368457004691,0.136694227721025,0.228778173206523,0,0,0,5.72802370809068,3.32152793260192,11.1825706919767,5.18425635944646,4.18176592028937,5.8957892211468,4.18079473792944,4.95920734352016,6.54389854960074,2.20345454596048,1.24267862617385,0,0.598066184175915,0.165458490457098,0,0.129159823477731,0.168956125490778,0.704143431874524,0.911430693907651,1.04859344425711,0.241584120826006,0.864090018773596,0.948033361884535,1.01362607645082,1.1298205288131,0.51968329191118,0.358053391334963,1.39076948346885,0.480781798079875,0.443068581523732,1.00966449948148,0.762068066549998,0.604957110821043,0.779663045918019,0.481059208201647,0.350630706544707,2.72076460338254,0,0,0,1.54551675225752,0.563047426353546,0.183151624267265,0.428736758158132,0,360.876427432306,355.371082583541,367.226024114653,388.21633891439,358.983240359817,388.272463258306,350.336677620307,403.487798088902,377.014484274858,409.54840659569,3.52876981786201,10.3746467084268,15.5367581236262,24.3106717068294,19.4940241244024,22.0612210140017,20.224452229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| |||
|short_description=p1@Sez6l2 | |||
}} |
Revision as of 06:15, 4 August 2015
Short description: | p1@Sez6l2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sez6l2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000032921, ENSMUST00000106335, ENSMUST00000146017, ENSMUST00000164305, NM_001252566, NM_001252567, NM_144926_5end |
EntrezGene: | 233878 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.44e-14 | 33 |
neuronal stem cell | 3.44e-14 | 33 |
neuroblast | 3.44e-14 | 33 |
electrically signaling cell | 3.44e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.46e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.46e-13 | 23 |
neural cell | 2.12e-09 | 43 |
electrically responsive cell | 2.21e-09 | 39 |
electrically active cell | 2.21e-09 | 39 |
ectodermal cell | 2.57e-09 | 44 |
neurectodermal cell | 2.57e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.71e-28 | 73 |
neurectoderm | 1.95e-28 | 64 |
neural plate | 1.95e-28 | 64 |
presumptive neural plate | 1.95e-28 | 64 |
nervous system | 2.43e-28 | 75 |
regional part of nervous system | 7.49e-27 | 54 |
structure with developmental contribution from neural crest | 1.55e-25 | 92 |
neural tube | 2.32e-25 | 52 |
neural rod | 2.32e-25 | 52 |
future spinal cord | 2.32e-25 | 52 |
neural keel | 2.32e-25 | 52 |
ectoderm-derived structure | 7.72e-25 | 95 |
ectoderm | 7.72e-25 | 95 |
presumptive ectoderm | 7.72e-25 | 95 |
ecto-epithelium | 1.38e-22 | 73 |
brain | 3.21e-22 | 47 |
future brain | 3.21e-22 | 47 |
pre-chordal neural plate | 6.21e-22 | 49 |
regional part of brain | 1.27e-21 | 46 |
anterior neural tube | 5.83e-20 | 40 |
regional part of forebrain | 2.76e-19 | 39 |
forebrain | 2.76e-19 | 39 |
future forebrain | 2.76e-19 | 39 |
gray matter | 9.65e-18 | 34 |
brain grey matter | 6.97e-15 | 29 |
regional part of telencephalon | 6.97e-15 | 29 |
telencephalon | 6.97e-15 | 29 |
cerebral cortex | 1.73e-10 | 21 |
cerebral hemisphere | 1.73e-10 | 21 |
pallium | 1.73e-10 | 21 |
occipital lobe | 1.30e-08 | 10 |
visual cortex | 1.30e-08 | 10 |
neocortex | 1.30e-08 | 10 |
regional part of cerebral cortex | 1.66e-08 | 17 |