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Coexpression cluster:C76: Difference between revisions

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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19693744381922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|full_id=C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell
|full_id=C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell
|gostat_on_coexpression_clusters=GO:0030073!insulin secretion!0.0207743713648184!2645;139760$GO:0002790!peptide secretion!0.0207743713648184!2645;139760$GO:0030072!peptide hormone secretion!0.0207743713648184!2645;139760$GO:0005515!protein binding!0.036532638926643!1917;9365;2676;1113;84221;115353;79782;53904;3708;11069;2984;2645;84448;80206;2520;23373;54738$GO:0046879!hormone secretion!0.036532638926643!2645;139760$GO:0015833!peptide transport!0.036532638926643!2645;139760$GO:0060002!plus-end directed microfilament motor activity!0.036532638926643!53904$GO:0051594!detection of glucose!0.036532638926643!2645$GO:0009730!detection of carbohydrate stimulus!0.036532638926643!2645$GO:0005536!glucose binding!0.036532638926643!2645$GO:0004340!glucokinase activity!0.036532638926643!2645$GO:0046873!metal ion transmembrane transporter activity!0.036532638926643!89822;6833;3708;83795$GO:0022836!gated channel activity!0.036532638926643!89822;3708;83795;2555$GO:0006112!energy reserve metabolic process!0.0379028371044298!2645;9365$GO:0006813!potassium ion transport!0.0429179710207958!89822;6833;83795$GO:0003001!generation of a signal involved in cell-cell signaling!0.0429179710207958!2645;139760$GO:0009726!detection of endogenous stimulus!0.0429179710207958!2645$GO:0045721!negative regulation of gluconeogenesis!0.0429179710207958!2645$GO:0032024!positive regulation of insulin secretion!0.0429179710207958!2645$GO:0007267!cell-cell signaling!0.0429179710207958!2645;6753;139760;2555$GO:0035081!induction of programmed cell death by hormones!0.0429179710207958!6753$GO:0008628!induction of apoptosis by hormones!0.0429179710207958!6753$GO:0005979!regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008140!cAMP response element binding protein binding!0.0429179710207958!23373$GO:0045912!negative regulation of carbohydrate metabolic process!0.0429179710207958!2645$GO:0004566!beta-glucuronidase activity!0.0429179710207958!9365$GO:0045725!positive regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008422!beta-glucosidase activity!0.0429179710207958!9365$GO:0015079!potassium ion transmembrane transporter activity!0.0429179710207958!6833$GO:0030501!positive regulation of bone mineralization!0.0429179710207958!9365$GO:0005216!ion channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0030001!metal ion transport!0.0429179710207958!89822;6833;3708;83795$GO:0007010!cytoskeleton organization and biogenesis!0.0429179710207958!113220;84448;80206;10615$GO:0022838!substrate specific channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0022803!passive transmembrane transporter activity!0.0429179710207958!89822;3708;83795;2555$GO:0015267!channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0006111!regulation of gluconeogenesis!0.0429179710207958!2645$GO:0005220!inositol 1,4,5-triphosphate-sensitive calcium-release channel activity!0.0429179710207958!3708$GO:0008095!inositol-1,4,5-triphosphate receptor activity!0.0429179710207958!3708$GO:0030898!actin-dependent ATPase activity!0.0429179710207958!53904$GO:0043284!biopolymer biosynthetic process!0.0429179710207958!2645;1917
|gostat_on_coexpression_clusters=GO:0030073!insulin secretion!0.0207743713648184!2645;139760$GO:0002790!peptide secretion!0.0207743713648184!2645;139760$GO:0030072!peptide hormone secretion!0.0207743713648184!2645;139760$GO:0005515!protein binding!0.036532638926643!1917;9365;2676;1113;84221;115353;79782;53904;3708;11069;2984;2645;84448;80206;2520;23373;54738$GO:0046879!hormone secretion!0.036532638926643!2645;139760$GO:0015833!peptide transport!0.036532638926643!2645;139760$GO:0060002!plus-end directed microfilament motor activity!0.036532638926643!53904$GO:0051594!detection of glucose!0.036532638926643!2645$GO:0009730!detection of carbohydrate stimulus!0.036532638926643!2645$GO:0005536!glucose binding!0.036532638926643!2645$GO:0004340!glucokinase activity!0.036532638926643!2645$GO:0046873!metal ion transmembrane transporter activity!0.036532638926643!89822;6833;3708;83795$GO:0022836!gated channel activity!0.036532638926643!89822;3708;83795;2555$GO:0006112!energy reserve metabolic process!0.0379028371044298!2645;9365$GO:0006813!potassium ion transport!0.0429179710207958!89822;6833;83795$GO:0003001!generation of a signal involved in cell-cell signaling!0.0429179710207958!2645;139760$GO:0009726!detection of endogenous stimulus!0.0429179710207958!2645$GO:0045721!negative regulation of gluconeogenesis!0.0429179710207958!2645$GO:0032024!positive regulation of insulin secretion!0.0429179710207958!2645$GO:0007267!cell-cell signaling!0.0429179710207958!2645;6753;139760;2555$GO:0035081!induction of programmed cell death by hormones!0.0429179710207958!6753$GO:0008628!induction of apoptosis by hormones!0.0429179710207958!6753$GO:0005979!regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008140!cAMP response element binding protein binding!0.0429179710207958!23373$GO:0045912!negative regulation of carbohydrate metabolic process!0.0429179710207958!2645$GO:0004566!beta-glucuronidase activity!0.0429179710207958!9365$GO:0045725!positive regulation of glycogen biosynthetic process!0.0429179710207958!2645$GO:0008422!beta-glucosidase activity!0.0429179710207958!9365$GO:0015079!potassium ion transmembrane transporter activity!0.0429179710207958!6833$GO:0030501!positive regulation of bone mineralization!0.0429179710207958!9365$GO:0005216!ion channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0030001!metal ion transport!0.0429179710207958!89822;6833;3708;83795$GO:0007010!cytoskeleton organization and biogenesis!0.0429179710207958!113220;84448;80206;10615$GO:0022838!substrate specific channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0022803!passive transmembrane transporter activity!0.0429179710207958!89822;3708;83795;2555$GO:0015267!channel activity!0.0429179710207958!89822;3708;83795;2555$GO:0006111!regulation of gluconeogenesis!0.0429179710207958!2645$GO:0005220!inositol 1,4,5-triphosphate-sensitive calcium-release channel activity!0.0429179710207958!3708$GO:0008095!inositol-1,4,5-triphosphate receptor activity!0.0429179710207958!3708$GO:0030898!actin-dependent ATPase activity!0.0429179710207958!53904$GO:0043284!biopolymer biosynthetic process!0.0429179710207958!2645;1917

Revision as of 18:29, 12 September 2012


Full id: C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell



Phase1 CAGE Peaks

Hg19::chr10:18580030..18580069,+p@chr10:18580030..18580069
+
Hg19::chr10:26223126..26223136,+p6@MYO3A
Hg19::chr10:26223137..26223175,+p1@MYO3A
Hg19::chr10:26223200..26223212,+p4@MYO3A
Hg19::chr10:26223250..26223262,+p2@MYO3A
Hg19::chr10:26223415..26223425,+p@chr10:26223415..26223425
+
Hg19::chr10:26506919..26506931,-p@chr10:26506919..26506931
-
Hg19::chr10:66381988..66381993,-p@chr10:66381988..66381993
-
Hg19::chr10:66386701..66386711,-p@chr10:66386701..66386711
-
Hg19::chr11:17435105..17435116,-p3@ABCC8
Hg19::chr11:2428348..2428358,-p@chr11:2428348..2428358
-
Hg19::chr11:2428376..2428392,-p@chr11:2428376..2428392
-
Hg19::chr11:2435409..2435443,-p@chr11:2435409..2435443
-
Hg19::chr11:2436019..2436030,-p@chr11:2436019..2436030
-
Hg19::chr11:2436040..2436051,-p@chr11:2436040..2436051
-
Hg19::chr11:2436082..2436085,-p@chr11:2436082..2436085
-
Hg19::chr11:2436541..2436561,-p@chr11:2436541..2436561
-
Hg19::chr11:2439293..2439304,-p@chr11:2439293..2439304
-
Hg19::chr11:31838106..31838128,+p9@RCN1
Hg19::chr11:79742692..79742706,+p@chr11:79742692..79742706
+
Hg19::chr12:131117116..131117123,-p@chr12:131117116..131117123
-
Hg19::chr12:131117129..131117135,-p@chr12:131117129..131117135
-
Hg19::chr12:131117147..131117158,-p@chr12:131117147..131117158
-
Hg19::chr12:131117194..131117202,-p@chr12:131117194..131117202
-
Hg19::chr12:14849414..14849417,-p8@GUCY2C
Hg19::chr12:14849430..14849439,-p4@GUCY2C
Hg19::chr12:14849447..14849450,-p7@GUCY2C
Hg19::chr12:14849455..14849469,-p2@GUCY2C
Hg19::chr12:14849470..14849540,-p1@GUCY2C
Hg19::chr13:112170746..112170756,-p@chr13:112170746..112170756
-
Hg19::chr13:112170767..112170779,-p@chr13:112170767..112170779
-
Hg19::chr13:112170781..112170788,-p@chr13:112170781..112170788
-
Hg19::chr13:112170794..112170810,-p@chr13:112170794..112170810
-
Hg19::chr13:114202163..114202178,+p@chr13:114202163..114202178
+
Hg19::chr13:114202197..114202216,+p@chr13:114202197..114202216
+
Hg19::chr13:114202634..114202655,+p@chr13:114202634..114202655
+
Hg19::chr13:33590553..33590570,+p1@KL
Hg19::chr13:33642579..33642583,+p@chr13:33642579..33642583
+
Hg19::chr14:23465559..23465575,-p@chr14:23465559..23465575
-
Hg19::chr14:93388970..93388985,+p3@CHGA
Hg19::chr14:93388989..93389000,+p6@CHGA
Hg19::chr14:93389002..93389019,+p2@CHGA
Hg19::chr14:93389079..93389083,+p24@CHGA
Hg19::chr14:93389488..93389501,+p1@CHGA
Hg19::chr14:93397636..93397669,-p@chr14:93397636..93397669
-
Hg19::chr14:93397923..93397948,-p@chr14:93397923..93397948
-
Hg19::chr15:69854153..69854167,+p3@ENST00000498938
Hg19::chr15:69854189..69854206,+p2@ENST00000498938
Hg19::chr15:69854209..69854229,+p1@ENST00000498938
Hg19::chr16:1481075..1481082,+p@chr16:1481075..1481082
+
Hg19::chr16:2521470..2521487,+p2@NTN3
Hg19::chr16:2521503..2521514,+p5@NTN3
Hg19::chr16:2521599..2521611,+p7@NTN3
Hg19::chr16:88571559..88571611,+p@chr16:88571559..88571611
+
Hg19::chr16:89688655..89688668,+p@chr16:89688655..89688668
+
Hg19::chr16:89688715..89688726,+p@chr16:89688715..89688726
+
Hg19::chr17:26911586..26911592,-p9@SPAG5
Hg19::chr17:26911596..26911605,-p8@SPAG5
Hg19::chr17:27892902..27892907,+p@chr17:27892902..27892907
+
Hg19::chr17:27892922..27892925,+p@chr17:27892922..27892925
+
Hg19::chr17:27892945..27892952,+p@chr17:27892945..27892952
+
Hg19::chr17:32314322..32314327,-p@chr17:32314322..32314327
-
Hg19::chr17:32314379..32314387,-p@chr17:32314379..32314387
-
Hg19::chr17:39868577..39868585,+p1@GAST
Hg19::chr17:73553913..73553927,+p2@LLGL2
Hg19::chr17:73642712..73642733,+p3@C17orf110
Hg19::chr17:77788401..77788413,+p@chr17:77788401..77788413
+
Hg19::chr17:79225428..79225433,-p@chr17:79225428..79225433
-
Hg19::chr17:79225437..79225448,-p@chr17:79225437..79225448
-
Hg19::chr17:80972359..80972396,-p@chr17:80972359..80972396
-
Hg19::chr18:13165707..13165731,-p@chr18:13165707..13165731
-
Hg19::chr18:34124482..34124497,+p16@FHOD3
Hg19::chr18:34124507..34124520,+p8@FHOD3
Hg19::chr18:39739337..39739348,+p@chr18:39739337..39739348
+
Hg19::chr18:39739349..39739374,+p@chr18:39739349..39739374
+
Hg19::chr18:39739379..39739393,+p@chr18:39739379..39739393
+
Hg19::chr18:46812963..46812973,-p@chr18:46812963..46812973
-
Hg19::chr18:74350663..74350688,-p@chr18:74350663..74350688
-
Hg19::chr19:13710923..13710935,-p@chr19:13710923..13710935
-
Hg19::chr19:13710998..13711005,-p@chr19:13710998..13711005
-
Hg19::chr19:16838056..16838070,+p@chr19:16838056..16838070
+
Hg19::chr19:18846389..18846407,+p8@CRTC1
Hg19::chr19:36611243..36611285,+p@chr19:36611243..36611285
+
Hg19::chr19:42928426..42928438,+p2@ENST00000457234
Hg19::chr19:7184762..7184771,-p@chr19:7184762..7184771
-
Hg19::chr19:7184803..7184814,-p@chr19:7184803..7184814
-
Hg19::chr19:7184828..7184838,-p@chr19:7184828..7184838
-
Hg19::chr1:109079557..109079589,-p@chr1:109079557..109079589
-
Hg19::chr1:117008868..117008875,+p@chr1:117008868..117008875
+
Hg19::chr1:159892447..159892482,-p@chr1:159892447..159892482
-
Hg19::chr1:165325006..165325012,-p2@LMX1A
Hg19::chr1:2986285..2986306,-p@chr1:2986285..2986306
-
Hg19::chr1:54417667..54417685,+p9@LRRC42
Hg19::chr1:54417689..54417696,+p12@LRRC42
Hg19::chr20:1856502..1856513,-p@chr20:1856502..1856513
-
Hg19::chr20:20392704..20392711,-p@chr20:20392704..20392711
-
Hg19::chr20:20392726..20392736,-p@chr20:20392726..20392736
-
Hg19::chr20:20392756..20392765,-p@chr20:20392756..20392765
-
Hg19::chr20:21082096..21082103,-p7@LINC00237
Hg19::chr20:21082105..21082117,-p2@LINC00237
Hg19::chr20:21503214..21503241,-p@chr20:21503214..21503241
-
Hg19::chr20:21503302..21503344,-p@chr20:21503302..21503344
-
Hg19::chr20:21503356..21503373,-p@chr20:21503356..21503373
-
Hg19::chr20:21918384..21918387,+p@chr20:21918384..21918387
+
Hg19::chr20:21918392..21918404,+p@chr20:21918392..21918404
+
Hg19::chr20:21918433..21918444,+p@chr20:21918433..21918444
+
Hg19::chr20:21918450..21918454,+p@chr20:21918450..21918454
+
Hg19::chr20:21918470..21918480,+p@chr20:21918470..21918480
+
Hg19::chr20:62130745..62130766,-p15@EEF1A2
Hg19::chr21:47588743..47588750,-p9@C21orf56
Hg19::chr21:47588853..47588891,-p6@C21orf56
Hg19::chr21:47738057..47738076,-p2@C21orf58
Hg19::chr21:47738112..47738133,-p3@C21orf58
Hg19::chr22:32555214..32555221,-p2@C22orf42
Hg19::chr22:32555284..32555296,-p1@C22orf42
Hg19::chr22:37505742..37505761,-p1@TMPRSS6
Hg19::chr22:37608500..37608509,-p7@SSTR3
Hg19::chr22:37608511..37608522,-p2@SSTR3
Hg19::chr22:37608711..37608730,-p8@SSTR3
Hg19::chr22:44377129..44377137,+p@chr22:44377129..44377137
+
Hg19::chr22:44377278..44377303,+p@chr22:44377278..44377303
+
Hg19::chr22:44535867..44535877,+p@chr22:44535867..44535877
+
Hg19::chr2:173600326..173600344,+p18@RAPGEF4
Hg19::chr2:182451404..182451414,-p@chr2:182451404..182451414
-
Hg19::chr2:182501137..182501145,-p@chr2:182501137..182501145
-
Hg19::chr2:182546258..182546267,+p@chr2:182546258..182546267
+
Hg19::chr2:182546303..182546317,+p@chr2:182546303..182546317
+
Hg19::chr2:182548429..182548438,-p@chr2:182548429..182548438
-
Hg19::chr2:182548440..182548448,-p@chr2:182548440..182548448
-
Hg19::chr2:182548451..182548457,-p@chr2:182548451..182548457
-
Hg19::chr2:209407361..209407372,+p@chr2:209407361..209407372
+
Hg19::chr2:219849897..219849928,-p2@FEV
Hg19::chr2:238647466..238647474,+p@chr2:238647466..238647474
+
Hg19::chr2:241836298..241836311,-p4@C2orf54
Hg19::chr2:3487019..3487031,-p@chr2:3487019..3487031
-
Hg19::chr2:9059355..9059366,-p@chr2:9059355..9059366
-
Hg19::chr2:9059377..9059382,-p@chr2:9059377..9059382
-
Hg19::chr3:127634202..127634213,+p8@KBTBD12
Hg19::chr3:149689576..149689588,-p@chr3:149689576..149689588
-
Hg19::chr3:169587717..169587728,-p1@LRRC31
Hg19::chr3:178137027..178137041,+p2@KCNMB2-IT1
Hg19::chr3:178137042..178137098,+p1@KCNMB2-IT1
Hg19::chr3:178213272..178213277,+p@chr3:178213272..178213277
+
Hg19::chr3:178235746..178235750,+p@chr3:178235746..178235750
+
Hg19::chr3:4810204..4810210,+p34@ITPR1
Hg19::chr3:73500257..73500273,-p@chr3:73500257..73500273
-
Hg19::chr3:73500279..73500290,-p@chr3:73500279..73500290
-
Hg19::chr4:142199946..142199958,-p1@ENST00000514347
Hg19::chr4:22737597..22737604,+p@chr4:22737597..22737604
+
Hg19::chr4:46391248..46391261,-p16@GABRA2
Hg19::chr4:46391473..46391496,-p8@GABRA2
Hg19::chr4:8012437..8012446,-p12@ABLIM2
Hg19::chr5:137610117..137610157,-p2@GFRA3
Hg19::chr5:137610161..137610174,-p3@GFRA3
Hg19::chr5:137610185..137610196,-p6@GFRA3
Hg19::chr5:137610230..137610244,-p5@GFRA3
Hg19::chr5:137610263..137610273,-p7@GFRA3
Hg19::chr5:137610280..137610295,-p4@GFRA3
Hg19::chr5:137610300..137610332,-p1@GFRA3
Hg19::chr5:170105957..170105992,-p@chr5:170105957..170105992
-
Hg19::chr6:117198376..117198383,+p2@RFX6
Hg19::chr6:117198400..117198441,+p1@RFX6
Hg19::chr6:117198458..117198464,+p4@RFX6
Hg19::chr6:138820685..138820701,-p16@NHSL1
Hg19::chr6:18208412..18208420,+p@chr6:18208412..18208420
+
Hg19::chr6:18208425..18208436,+p@chr6:18208425..18208436
+
Hg19::chr6:20705180..20705181,+p@chr6:20705180..20705181
+
Hg19::chr6:25661559..25661563,+p@chr6:25661559..25661563
+
Hg19::chr6:25661565..25661601,+p@chr6:25661565..25661601
+
Hg19::chr6:25661603..25661614,+p@chr6:25661603..25661614
+
Hg19::chr6:25661625..25661634,+p@chr6:25661625..25661634
+
Hg19::chr6:25661650..25661661,+p@chr6:25661650..25661661
+
Hg19::chr6:25661814..25661832,+p@chr6:25661814..25661832
+
Hg19::chr6:39282405..39282406,-p5@KCNK17
Hg19::chr6:39290371..39290388,-p4@KCNK16
Hg19::chr6:39290407..39290416,-p5@KCNK16
Hg19::chr6:39290436..39290454,-p3@KCNK16
Hg19::chr6:39290466..39290482,-p2@KCNK16
Hg19::chr6:39290499..39290502,-p8@KCNK16
Hg19::chr6:39290752..39290794,-p1@KCNK16
Hg19::chr6:39290815..39290820,-p6@KCNK16
Hg19::chr6:49467576..49467583,+p5@GLYATL3
Hg19::chr6:49467630..49467640,+p3@GLYATL3
Hg19::chr6:49467646..49467657,+p1@GLYATL3
Hg19::chr6:49467678..49467693,+p2@GLYATL3
Hg19::chr6:49467718..49467724,+p4@GLYATL3
Hg19::chr7:1140919..1140936,+p@chr7:1140919..1140936
+
Hg19::chr7:127258120..127258138,-p3@PAX4
Hg19::chr7:127258139..127258173,-p1@PAX4
Hg19::chr7:127258190..127258201,-p2@PAX4
Hg19::chr7:127260123..127260165,+p@chr7:127260123..127260165
+
Hg19::chr7:44229027..44229055,-p1@GCK
Hg19::chr7:44360862..44360872,+p@chr7:44360862..44360872
+
Hg19::chr7:4474103..4474113,+p@chr7:4474103..4474113
+
Hg19::chr7:4476270..4476275,-p@chr7:4476270..4476275
-
Hg19::chr7:81779566..81779574,-p@chr7:81779566..81779574
-
Hg19::chr7:81803355..81803360,-p@chr7:81803355..81803360
-
Hg19::chr7:81824973..81824977,-p@chr7:81824973..81824977
-
Hg19::chr7:92834958..92834964,-p6@HEPACAM2
Hg19::chr7:92838072..92838076,-p@chr7:92838072..92838076
-
Hg19::chr7:92855762..92855790,-p1@HEPACAM2
Hg19::chr7:96125173..96125184,-p@chr7:96125173..96125184
-
Hg19::chr8:121054330..121054333,-p@chr8:121054330..121054333
-
Hg19::chr8:121056304..121056311,-p@chr8:121056304..121056311
-
Hg19::chr8:121056349..121056360,-p@chr8:121056349..121056360
-
Hg19::chr8:121056549..121056554,-p@chr8:121056549..121056554
-
Hg19::chr8:121058540..121058543,-p@chr8:121058540..121058543
-
Hg19::chr8:121062548..121062551,-p@chr8:121062548..121062551
-
Hg19::chr8:121066549..121066554,-p@chr8:121066549..121066554
-
Hg19::chr8:14066604..14066622,-p@chr8:14066604..14066622
-
Hg19::chr8:22000519..22000525,-p@chr8:22000519..22000525
-
Hg19::chr8:22001308..22001310,-p@chr8:22001308..22001310
-
Hg19::chr8:33464773..33464782,+p@chr8:33464773..33464782
+
Hg19::chr8:41484957..41484961,-p@chr8:41484957..41484961
-
Hg19::chr8:41485005..41485017,-p@chr8:41485005..41485017
-
Hg19::chr8:41485037..41485047,-p@chr8:41485037..41485047
-
Hg19::chr8:41485173..41485181,-p@chr8:41485173..41485181
-
Hg19::chr8:41485201..41485208,-p@chr8:41485201..41485208
-
Hg19::chr8:41485217..41485222,-p@chr8:41485217..41485222
-
Hg19::chr8:41486855..41486866,-p@chr8:41486855..41486866
-
Hg19::chr8:41508303..41508308,-p2@NKX6-3
Hg19::chr8:41508327..41508355,-p1@NKX6-3
Hg19::chr8:41508473..41508497,+p@chr8:41508473..41508497
+
Hg19::chr8:41508583..41508595,+p@chr8:41508583..41508595
+
Hg19::chr8:41508626..41508633,+p@chr8:41508626..41508633
+
Hg19::chr8:41512768..41512771,+p@chr8:41512768..41512771
+
Hg19::chr8:41512838..41512845,+p@chr8:41512838..41512845
+
Hg19::chr9:116861343..116861349,-p7@KIF12
Hg19::chr9:116861558..116861582,-p1@KIF12
Hg19::chr9:129097583..129097594,+p9@FAM125B
Hg19::chr9:129097637..129097639,+p29@FAM125B
Hg19::chr9:130404686..130404720,+p@chr9:130404686..130404720
+
Hg19::chr9:134420922..134420947,+p@chr9:134420922..134420947
+
Hg19::chr9:136753303..136753309,-p@chr9:136753303..136753309
-
Hg19::chr9:139658908..139658936,-p2@LCN15
Hg19::chr9:35237460..35237466,+p@chr9:35237460..35237466
+
Hg19::chr9:35237473..35237478,+p@chr9:35237473..35237478
+
Hg19::chrX:129519632..129519657,-p1@GPR119


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
3.1297509870497e-050.01981132374802464125Integration of energy metabolism (Reactome):REACT_1505



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030073insulin secretion0.0207743713648184
GO:0002790peptide secretion0.0207743713648184
GO:0030072peptide hormone secretion0.0207743713648184
GO:0005515protein binding0.036532638926643
GO:0046879hormone secretion0.036532638926643
GO:0015833peptide transport0.036532638926643
GO:0060002plus-end directed microfilament motor activity0.036532638926643
GO:0051594detection of glucose0.036532638926643
GO:0009730detection of carbohydrate stimulus0.036532638926643
GO:0005536glucose binding0.036532638926643
GO:0004340glucokinase activity0.036532638926643
GO:0046873metal ion transmembrane transporter activity0.036532638926643
GO:0022836gated channel activity0.036532638926643
GO:0006112energy reserve metabolic process0.0379028371044298
GO:0006813potassium ion transport0.0429179710207958
GO:0003001generation of a signal involved in cell-cell signaling0.0429179710207958
GO:0009726detection of endogenous stimulus0.0429179710207958
GO:0045721negative regulation of gluconeogenesis0.0429179710207958
GO:0032024positive regulation of insulin secretion0.0429179710207958
GO:0007267cell-cell signaling0.0429179710207958
GO:0035081induction of programmed cell death by hormones0.0429179710207958
GO:0008628induction of apoptosis by hormones0.0429179710207958
GO:0005979regulation of glycogen biosynthetic process0.0429179710207958
GO:0008140cAMP response element binding protein binding0.0429179710207958
GO:0045912negative regulation of carbohydrate metabolic process0.0429179710207958
GO:0004566beta-glucuronidase activity0.0429179710207958
GO:0045725positive regulation of glycogen biosynthetic process0.0429179710207958
GO:0008422beta-glucosidase activity0.0429179710207958
GO:0015079potassium ion transmembrane transporter activity0.0429179710207958
GO:0030501positive regulation of bone mineralization0.0429179710207958
GO:0005216ion channel activity0.0429179710207958
GO:0030001metal ion transport0.0429179710207958
GO:0007010cytoskeleton organization and biogenesis0.0429179710207958
GO:0022838substrate specific channel activity0.0429179710207958
GO:0022803passive transmembrane transporter activity0.0429179710207958
GO:0015267channel activity0.0429179710207958
GO:0006111regulation of gluconeogenesis0.0429179710207958
GO:0005220inositol 1,4,5-triphosphate-sensitive calcium-release channel activity0.0429179710207958
GO:0008095inositol-1,4,5-triphosphate receptor activity0.0429179710207958
GO:0030898actin-dependent ATPase activity0.0429179710207958
GO:0043284biopolymer biosynthetic process0.0429179710207958



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
adult organism1.68e-42115
regional part of nervous system6.79e-2994
nervous system6.79e-2994
central nervous system5.06e-2882
neural tube5.17e-2757
neural rod5.17e-2757
future spinal cord5.17e-2757
neural keel5.17e-2757
neurectoderm5.05e-2490
neural plate2.97e-2386
presumptive neural plate2.97e-2386
brain3.35e-2369
future brain3.35e-2369
regional part of brain1.39e-2259
anterior neural tube8.36e-2142
regional part of forebrain1.36e-2041
forebrain1.36e-2041
future forebrain1.36e-2041
ectoderm2.61e-18173
presumptive ectoderm2.61e-18173
pre-chordal neural plate3.22e-1861
ectoderm-derived structure1.60e-17169
gray matter6.07e-1734
brain grey matter6.07e-1734
telencephalon8.18e-1734
regional part of telencephalon2.40e-1633
cerebral hemisphere5.63e-1632
anterior region of body3.71e-15129
craniocervical region3.71e-15129
head7.93e-15123
cerebral cortex8.31e-1325
pallium8.31e-1325
regional part of cerebral cortex1.56e-1222
neocortex1.24e-1120
organ part1.77e-09219
organ1.23e-08511
multi-tissue structure4.90e-08347
posterior neural tube2.19e-0715
chordal neural plate2.19e-0715
Disease
Ontology termp-valuen
cell type cancer4.99e-10143
carcinoma2.02e-08106


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
FOXA2#3170232.380254900467650.0001239617617779750.00165259668602629



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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