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MCL coexpression mm9:3018: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!1.58e-24!44;CL:0000133!1.58e-24!44;CL:0002319!4.14e-24!43;CL:0000055!1.65e-23!49;CL:0000540!4.51e-18!33;CL:0000047!4.51e-18!33;CL:0000031!4.51e-18!33;CL:0000404!4.51e-18!33;CL:0000393!1.80e-17!39;CL:0000211!1.80e-17!39;CL:0000117!1.44e-13!23;CL:0000337!1.44e-13!23;CL:0002321!1.05e-09!70;CL:0000333!7.38e-07!10;CL:0000095!7.38e-07!10;CL:0000243!7.38e-07!10;CL:0000123!7.38e-07!10;CL:0000125!7.38e-07!10;CL:0000030!7.38e-07!10;CL:0000339!7.38e-07!10
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001016!4.96e-39!75;UBERON:0001017!1.30e-37!73;UBERON:0004121!4.15e-35!95;UBERON:0000924!4.15e-35!95;UBERON:0006601!4.15e-35!95;UBERON:0002346!4.46e-28!64;UBERON:0003075!4.46e-28!64;UBERON:0007284!4.46e-28!64;UBERON:0000073!5.63e-26!54;UBERON:0010371!1.20e-24!73;UBERON:0001049!1.56e-24!52;UBERON:0005068!1.56e-24!52;UBERON:0006241!1.56e-24!52;UBERON:0007135!1.56e-24!52;UBERON:0010314!2.55e-22!92;UBERON:0000955!3.78e-21!47;UBERON:0006238!3.78e-21!47;UBERON:0002616!1.68e-20!46;UBERON:0003056!1.05e-19!49;UBERON:0003080!6.75e-18!40;UBERON:0002020!1.40e-17!34;UBERON:0002780!2.48e-17!39;UBERON:0001890!2.48e-17!39;UBERON:0006240!2.48e-17!39;UBERON:0003528!1.80e-14!29;UBERON:0002791!1.80e-14!29;UBERON:0001893!1.80e-14!29;UBERON:0000956!3.03e-10!21;UBERON:0001869!3.03e-10!21;UBERON:0000203!3.03e-10!21;UBERON:0002619!5.94e-09!17;UBERON:0003076!3.08e-07!12;UBERON:0003057!3.08e-07!12;UBERON:0004111!4.51e-07!122
}}
}}

Revision as of 19:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:87454688..87454721,+p@chr15:87454688..87454721
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Mm9::chr15:87454726..87454739,+p@chr15:87454726..87454739
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Mm9::chr9:55889669..55889687,+p1@Rcn2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system4.96e-3975
central nervous system1.30e-3773
ectoderm-derived structure4.15e-3595
ectoderm4.15e-3595
presumptive ectoderm4.15e-3595
neurectoderm4.46e-2864
neural plate4.46e-2864
presumptive neural plate4.46e-2864
regional part of nervous system5.63e-2654
ecto-epithelium1.20e-2473
neural tube1.56e-2452
neural rod1.56e-2452
future spinal cord1.56e-2452
neural keel1.56e-2452
structure with developmental contribution from neural crest2.55e-2292
brain3.78e-2147
future brain3.78e-2147
regional part of brain1.68e-2046
pre-chordal neural plate1.05e-1949
anterior neural tube6.75e-1840
gray matter1.40e-1734
regional part of forebrain2.48e-1739
forebrain2.48e-1739
future forebrain2.48e-1739
brain grey matter1.80e-1429
regional part of telencephalon1.80e-1429
telencephalon1.80e-1429
cerebral cortex3.03e-1021
cerebral hemisphere3.03e-1021
pallium3.03e-1021
regional part of cerebral cortex5.94e-0917
posterior neural tube3.08e-0712
chordal neural plate3.08e-0712
anatomical conduit4.51e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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