FFCP PHASE1:Mm9::chr5:34326128..34326178,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr5:34326128..34326178,+ | |id=chr5:34326128..34326178,+ | ||
|ontology_enrichment_celltype=CL:0000221!4.93e-22!44;CL:0000133!4.93e-22!44;CL:0002319!1.39e-21!43;CL:0000055!4.21e-19!50;CL:0000540!1.15e-17!33;CL:0000047!1.15e-17!33;CL:0000031!1.15e-17!33;CL:0000404!1.15e-17!33;CL:0000393!1.62e-15!39;CL:0000211!1.62e-15!39;CL:0000117!2.34e-15!23;CL:0000337!2.34e-15!23;CL:0002321!1.88e-07!70;CL:0000220!1.88e-07!70 | |ontology_enrichment_celltype=CL:0000221!4.93e-22!44;CL:0000133!4.93e-22!44;CL:0002319!1.39e-21!43;CL:0000055!4.21e-19!50;CL:0000540!1.15e-17!33;CL:0000047!1.15e-17!33;CL:0000031!1.15e-17!33;CL:0000404!1.15e-17!33;CL:0000393!1.62e-15!39;CL:0000211!1.62e-15!39;CL:0000117!2.34e-15!23;CL:0000337!2.34e-15!23;CL:0002321!1.88e-07!70;CL:0000220!1.88e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.15e-22,44;CL:0000133,4.15e-22,44;CL:0002319,1.17e-21,43;CL:0000540,1.00e-17,33;CL:0000047,1.00e-17,33;CL:0000031,1.00e-17,33;CL:0000404,1.00e-17,33;CL:0000393,1.44e-15,39;CL:0000211,1.44e-15,39;CL:0000117,2.09e-15,23;CL:0000337,2.09e-15,23;CL:0002321,8.28e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.25e-36!73;UBERON:0005743!8.25e-36!73;UBERON:0000073!3.10e-35!75;UBERON:0001016!3.10e-35!75;UBERON:0004121!3.02e-29!102;UBERON:0000924!3.02e-29!102;UBERON:0006601!3.02e-29!102;UBERON:0002346!7.86e-27!71;UBERON:0003075!7.86e-27!71;UBERON:0007284!7.86e-27!71;UBERON:0001049!3.84e-25!52;UBERON:0005068!3.84e-25!52;UBERON:0006241!3.84e-25!52;UBERON:0007135!3.84e-25!52;UBERON:0000955!2.11e-23!50;UBERON:0006238!2.11e-23!50;UBERON:0002616!4.26e-23!49;UBERON:0000033!8.76e-23!63;UBERON:0003056!4.83e-20!49;UBERON:0003080!1.18e-19!40;UBERON:0002780!2.73e-19!39;UBERON:0001890!2.73e-19!39;UBERON:0006240!2.73e-19!39;UBERON:0002020!8.12e-19!34;UBERON:0002791!1.48e-15!29;UBERON:0003528!1.48e-15!29;UBERON:0001893!1.48e-15!29;UBERON:0000956!4.55e-11!21;UBERON:0001869!4.55e-11!21;UBERON:0000203!4.55e-11!21;UBERON:0000153!2.77e-10!94;UBERON:0007811!2.89e-10!86;UBERON:0002619!5.48e-09!17 | |ontology_enrichment_uberon=UBERON:0001017!8.25e-36!73;UBERON:0005743!8.25e-36!73;UBERON:0000073!3.10e-35!75;UBERON:0001016!3.10e-35!75;UBERON:0004121!3.02e-29!102;UBERON:0000924!3.02e-29!102;UBERON:0006601!3.02e-29!102;UBERON:0002346!7.86e-27!71;UBERON:0003075!7.86e-27!71;UBERON:0007284!7.86e-27!71;UBERON:0001049!3.84e-25!52;UBERON:0005068!3.84e-25!52;UBERON:0006241!3.84e-25!52;UBERON:0007135!3.84e-25!52;UBERON:0000955!2.11e-23!50;UBERON:0006238!2.11e-23!50;UBERON:0002616!4.26e-23!49;UBERON:0000033!8.76e-23!63;UBERON:0003056!4.83e-20!49;UBERON:0003080!1.18e-19!40;UBERON:0002780!2.73e-19!39;UBERON:0001890!2.73e-19!39;UBERON:0006240!2.73e-19!39;UBERON:0002020!8.12e-19!34;UBERON:0002791!1.48e-15!29;UBERON:0003528!1.48e-15!29;UBERON:0001893!1.48e-15!29;UBERON:0000956!4.55e-11!21;UBERON:0001869!4.55e-11!21;UBERON:0000203!4.55e-11!21;UBERON:0000153!2.77e-10!94;UBERON:0007811!2.89e-10!86;UBERON:0002619!5.48e-09!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.19e-36,73;UBERON:0001016,2.34e-35,75;UBERON:0004121,1.63e-28,95;UBERON:0000924,1.63e-28,95;UBERON:0006601,1.63e-28,95;UBERON:0002346,4.97e-27,64;UBERON:0003075,4.97e-27,64;UBERON:0007284,4.97e-27,64;UBERON:0000073,1.11e-26,54;UBERON:0001049,3.15e-25,52;UBERON:0005068,3.15e-25,52;UBERON:0006241,3.15e-25,52;UBERON:0007135,3.15e-25,52;UBERON:0010371,5.84e-23,73;UBERON:0010314,2.68e-22,92;UBERON:0000955,7.32e-22,47;UBERON:0006238,7.32e-22,47;UBERON:0002616,1.46e-21,46;UBERON:0003056,4.14e-20,49;UBERON:0003080,1.02e-19,40;UBERON:0002780,2.35e-19,39;UBERON:0001890,2.35e-19,39;UBERON:0006240,2.35e-19,39;UBERON:0002020,7.03e-19,34;UBERON:0003528,1.32e-15,29;UBERON:0002791,1.32e-15,29;UBERON:0001893,1.32e-15,29;UBERON:0000956,4.20e-11,21;UBERON:0001869,4.20e-11,21;UBERON:0000203,4.20e-11,21;UBERON:0002619,5.15e-09,17;UBERON:0000922,7.50e-07,320 | |||
|phase1_expression=64.539985383232,0,0.454999239389536,0,0,0.16787927191189,0,0.258246646883153,0.140788722151667,0.234064526321993,0.171217968225505,0,0,0.262261207256992,0,0,0,0.473193248037357,0.548457734422955,2.12194825899015,27.2138528483423,4.36880185283895,5.22399578277871,0.159992422793407,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0.886922042621219,0,0,0,0.288851619751275,1.99481574430191,0.408338712524738,2.92972141515835,1.5626706890476,3.66466620781659,7.64700934440319,4.78131839470912,11.1667381197165,15.2335149750449,15.7134243390248,19.8230492334616,155.69587752526,122.966188198572,72.0570679369068,59.8844089148793,71.6730478721856,250.129461995051,0,0,0.336093799142464,11.3194151855817,20.057340795713,8.76642556871652,287.289374420629,343.844136526821,362.551562805535,66.0746837534808,66.6971097083354,39.5955875603816,67.2429126545543,60.3908097704185,129.127647633432,258.194701176085,146.928180641113,203.993972819185,191.606039791109,219.094305037717,198.781686856452,212.766518236375,154.502899281397,280.361729916056,122.228627909321,67.6742891851495,68.5085138322846,249.528856385527,206.030173392627,234.411016750542,136.799669510677,165.452207349314,92.2901416571933,179.428808553464,146.642831223076,221.256142194632,8.63278603998298,25.3920441958799,16.8121403446973,8.60423876981386,0,0.539703191637817,0,0,7.72444310724635,0,0,0,66.0555638752632,0,0,0,37.0199680129176,38.2573396867399,34.88118670602,4.79572294820052,0,21.6725523034644,37.1258599279531,35.9269264408327,30.2106301405437,30.1445281105245,17.4031286560843,14.325991411583,0.741584903203122,0.86759614151947,0.884610551949874,3.72063754879041,3.3126227769059,3.87900202508178,1.86391761218122,31.6203260772471,27.2280718857492,0.510914110417183,3.59445373517761,7.7987355029143,3.68503658511888,59.0175119255001,43.4625572677695,156.062705324178,54.5808365403748,46.2844977767898,64.6220818580232,45.9142774481754,24.5432866879262,4.22983700074316,25.7777213602348,2.10441855886474,55.0409473732237,100.467219637428,55.4591359800476,46.4170838934002,31.5689356062161,28.6974733438064,36.3562691291748,10.3481348295606,36.2154228127175,36.1192613120535,33.0788113428224,41.6471891612392,19.1852601965663,14.9748431604532,13.7874031393322,47.9672583032569,4.91549231119264,7.97778512055617,8.24074148247219,24.4408411591892,27.2050229578072,30.9706745712946,18.9395788468168,20.46348010173,20.0547246753592,15.5797742982773,8.31647544338819,11.6765342367169,8.06343264576054,7.71587081171748,4.05344047729279,4.5321996101853,3.73235195994786,5.2340503316545,36.5904510501581,116.48802121335,0.330418782983798,0.264450566663544,46.2835503661458,35.0677374509262,14.8197580520407,7.66397393568702,8.67274370994994,9.3210556795154,1.89811624617805,5.59976446061637,6.78605063760728,7.95825888164603,4.28920991662064,0.898819408654221,1.29682829924817,0.796565093017469,44.0029530211149,33.0178201442116,14.6520056375005,25.8637186363549,19.3952487167626,12.4140401205864,6.70307293517127,0.885660887877613,1.09899109488962,1.1105744752962,0.889357881261447,3.17005700860579,3.73462090715086,2.24862112384854,2.43432145666204,2.17059443777175,5.60176873919124,2.87696137450811,1.45921704097532,3.0201755450689,2.87536413054709,3.34926852901653,6.55279113540577,1.51547326768267,1.07638448113147,2.41221760681684,4.80358294433172,53.8155609428177,16.7853925735287,23.7643120085263,16.8976978767722,10.7204004762762,9.99783291721258,4.29294025287157,4.88668946729192,5.75808193086815,4.14582398509466,3.60499292374624,4.31712454664739,2.4590339958857,4.52373851817817,5.4390568381871,2.45882136509518,3.86311444826625,52.9816946959713,45.7125577709592,27.7050057686581,1.26235463602186,62.7861356638351,64.4223928089453,46.3160305125518,37.2791324805981,37.875774594007,33.6861071638711,47.7676627976375,57.2821481506171,41.505216684385,47.5555548304274,8.94222536812092,54.3100091185128,24.4330439030364,10.5580878702423,2.65490276679926,31.8042633363026,30.5346792534399,9.05304382828311,11.5167738223501,10.1453598821496,4.65170927702798,7.27067458955011,8.55593708123331,0.948110273807448,0,1.03135543248187,36.4270378156553,65.7222993214282,78.3913623723492,67.30182899992,51.7833482235439,63.3209302487351,62.3640788082038,77.6385620242228,7.50949465803873,3.60114520468494,4.85162475720916,0.32977250588296,16.9537648030701,6.27254419252821,3.81991500810037,1.31312719796049,2.33184669303881,39.1247387242175,1.87957968877638,17.9556575128004,5.74103034846106,1.88368457004691,0.683471138605126,2.0590035588587,5.09935289981566,4.75834937900437,5.66619892598138,0.954670618015114,40.3328391815948,18.2987520414164,18.3609079397062,15.2634456090562,15.940467153471,6.74321731924104,4.54594006489348,2.35580347785627,1.03691978633434,0.621339313086926,175.308503930783,22.7265149986848,37.8899943146754,27.2231663681667,36.9397095146311,27.0329800785245,21.2416601948815,20.832701575032,27.0537108618334,74.8910774560619,81.8005217772338,6.32022241256356,27.7733544947525,16.4337531463724,8.70469513951227,6.08690765269437,5.96044064343795,3.12508168751919,5.02144392393563,5.14928894735553,4.80102881926499,3.32726410951574,3.99577311032985,3.17499077413087,4.32444538071805,0.680191150845634,54.830530483394,117.435438301804,41.6353848582915,1.73870634628971,4.69206188627955,6.22715522508701,3.64426244434412,87.2735461021532,81.8890171794746,70.4297611855981,72.7577302068034,148.824855909633,71.2485820561468,58.1653300990069,73.5774525252668,67.0978592804088,66.1587917116939,63.6845183454738,49.0914154073156,43.4937112007124,62.1470324945048,29.9021261994002,36.2630771346409,44.3062855364534,26.8918540639954,29.0509430706841,24.389859928978,24.7643267528522,27.3757643881459,24.1441716974178,23.87858440482,24.2015076090406,24.6398161819581,26.1961530205691,22.481559233302,19.2909220463705,29.2580989570348,24.43502074231,27.0866709384478,31.4132176902027,24.0820551846794,30.522747492789,27.2917203204459,27.6689767805782,31.4636113341169,26.3069711437843,24.8521528337927,25.812544496256,26.4556090416908,22.8530399111307,30.6923282377267,29.7478735077055,28.5501784252089,64.9507502638659,25.2646137121041,24.495300161506,10.1382815996487,9.48543102213917,5.56482805489012 | |phase1_expression=64.539985383232,0,0.454999239389536,0,0,0.16787927191189,0,0.258246646883153,0.140788722151667,0.234064526321993,0.171217968225505,0,0,0.262261207256992,0,0,0,0.473193248037357,0.548457734422955,2.12194825899015,27.2138528483423,4.36880185283895,5.22399578277871,0.159992422793407,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0.886922042621219,0,0,0,0.288851619751275,1.99481574430191,0.408338712524738,2.92972141515835,1.5626706890476,3.66466620781659,7.64700934440319,4.78131839470912,11.1667381197165,15.2335149750449,15.7134243390248,19.8230492334616,155.69587752526,122.966188198572,72.0570679369068,59.8844089148793,71.6730478721856,250.129461995051,0,0,0.336093799142464,11.3194151855817,20.057340795713,8.76642556871652,287.289374420629,343.844136526821,362.551562805535,66.0746837534808,66.6971097083354,39.5955875603816,67.2429126545543,60.3908097704185,129.127647633432,258.194701176085,146.928180641113,203.993972819185,191.606039791109,219.094305037717,198.781686856452,212.766518236375,154.502899281397,280.361729916056,122.228627909321,67.6742891851495,68.5085138322846,249.528856385527,206.030173392627,234.411016750542,136.799669510677,165.452207349314,92.2901416571933,179.428808553464,146.642831223076,221.256142194632,8.63278603998298,25.3920441958799,16.8121403446973,8.60423876981386,0,0.539703191637817,0,0,7.72444310724635,0,0,0,66.0555638752632,0,0,0,37.0199680129176,38.2573396867399,34.88118670602,4.79572294820052,0,21.6725523034644,37.1258599279531,35.9269264408327,30.2106301405437,30.1445281105245,17.4031286560843,14.325991411583,0.741584903203122,0.86759614151947,0.884610551949874,3.72063754879041,3.3126227769059,3.87900202508178,1.86391761218122,31.6203260772471,27.2280718857492,0.510914110417183,3.59445373517761,7.7987355029143,3.68503658511888,59.0175119255001,43.4625572677695,156.062705324178,54.5808365403748,46.2844977767898,64.6220818580232,45.9142774481754,24.5432866879262,4.22983700074316,25.7777213602348,2.10441855886474,55.0409473732237,100.467219637428,55.4591359800476,46.4170838934002,31.5689356062161,28.6974733438064,36.3562691291748,10.3481348295606,36.2154228127175,36.1192613120535,33.0788113428224,41.6471891612392,19.1852601965663,14.9748431604532,13.7874031393322,47.9672583032569,4.91549231119264,7.97778512055617,8.24074148247219,24.4408411591892,27.2050229578072,30.9706745712946,18.9395788468168,20.46348010173,20.0547246753592,15.5797742982773,8.31647544338819,11.6765342367169,8.06343264576054,7.71587081171748,4.05344047729279,4.5321996101853,3.73235195994786,5.2340503316545,36.5904510501581,116.48802121335,0.330418782983798,0.264450566663544,46.2835503661458,35.0677374509262,14.8197580520407,7.66397393568702,8.67274370994994,9.3210556795154,1.89811624617805,5.59976446061637,6.78605063760728,7.95825888164603,4.28920991662064,0.898819408654221,1.29682829924817,0.796565093017469,44.0029530211149,33.0178201442116,14.6520056375005,25.8637186363549,19.3952487167626,12.4140401205864,6.70307293517127,0.885660887877613,1.09899109488962,1.1105744752962,0.889357881261447,3.17005700860579,3.73462090715086,2.24862112384854,2.43432145666204,2.17059443777175,5.60176873919124,2.87696137450811,1.45921704097532,3.0201755450689,2.87536413054709,3.34926852901653,6.55279113540577,1.51547326768267,1.07638448113147,2.41221760681684,4.80358294433172,53.8155609428177,16.7853925735287,23.7643120085263,16.8976978767722,10.7204004762762,9.99783291721258,4.29294025287157,4.88668946729192,5.75808193086815,4.14582398509466,3.60499292374624,4.31712454664739,2.4590339958857,4.52373851817817,5.4390568381871,2.45882136509518,3.86311444826625,52.9816946959713,45.7125577709592,27.7050057686581,1.26235463602186,62.7861356638351,64.4223928089453,46.3160305125518,37.2791324805981,37.875774594007,33.6861071638711,47.7676627976375,57.2821481506171,41.505216684385,47.5555548304274,8.94222536812092,54.3100091185128,24.4330439030364,10.5580878702423,2.65490276679926,31.8042633363026,30.5346792534399,9.05304382828311,11.5167738223501,10.1453598821496,4.65170927702798,7.27067458955011,8.55593708123331,0.948110273807448,0,1.03135543248187,36.4270378156553,65.7222993214282,78.3913623723492,67.30182899992,51.7833482235439,63.3209302487351,62.3640788082038,77.6385620242228,7.50949465803873,3.60114520468494,4.85162475720916,0.32977250588296,16.9537648030701,6.27254419252821,3.81991500810037,1.31312719796049,2.33184669303881,39.1247387242175,1.87957968877638,17.9556575128004,5.74103034846106,1.88368457004691,0.683471138605126,2.0590035588587,5.09935289981566,4.75834937900437,5.66619892598138,0.954670618015114,40.3328391815948,18.2987520414164,18.3609079397062,15.2634456090562,15.940467153471,6.74321731924104,4.54594006489348,2.35580347785627,1.03691978633434,0.621339313086926,175.308503930783,22.7265149986848,37.8899943146754,27.2231663681667,36.9397095146311,27.0329800785245,21.2416601948815,20.832701575032,27.0537108618334,74.8910774560619,81.8005217772338,6.32022241256356,27.7733544947525,16.4337531463724,8.70469513951227,6.08690765269437,5.96044064343795,3.12508168751919,5.02144392393563,5.14928894735553,4.80102881926499,3.32726410951574,3.99577311032985,3.17499077413087,4.32444538071805,0.680191150845634,54.830530483394,117.435438301804,41.6353848582915,1.73870634628971,4.69206188627955,6.22715522508701,3.64426244434412,87.2735461021532,81.8890171794746,70.4297611855981,72.7577302068034,148.824855909633,71.2485820561468,58.1653300990069,73.5774525252668,67.0978592804088,66.1587917116939,63.6845183454738,49.0914154073156,43.4937112007124,62.1470324945048,29.9021261994002,36.2630771346409,44.3062855364534,26.8918540639954,29.0509430706841,24.389859928978,24.7643267528522,27.3757643881459,24.1441716974178,23.87858440482,24.2015076090406,24.6398161819581,26.1961530205691,22.481559233302,19.2909220463705,29.2580989570348,24.43502074231,27.0866709384478,31.4132176902027,24.0820551846794,30.522747492789,27.2917203204459,27.6689767805782,31.4636113341169,26.3069711437843,24.8521528337927,25.812544496256,26.4556090416908,22.8530399111307,30.6923282377267,29.7478735077055,28.5501784252089,64.9507502638659,25.2646137121041,24.495300161506,10.1382815996487,9.48543102213917,5.56482805489012 | ||
|short_description=p1@Gm1673 | |short_description=p1@Gm1673 | ||
}} | }} |
Revision as of 12:55, 13 November 2012
Short description: | p1@Gm1673 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm1673_5end |
Coexpression cluster: | MCL_coexpression_mm9:1294 |
Association with transcript: | 0bp_to_ENSMUST00000142510_5end |
EntrezGene: | Gm1673 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.15e-22 | 44 |
neurectodermal cell | 4.15e-22 | 44 |
neural cell | 1.17e-21 | 43 |
neuron | 1.00e-17 | 33 |
neuronal stem cell | 1.00e-17 | 33 |
neuroblast | 1.00e-17 | 33 |
electrically signaling cell | 1.00e-17 | 33 |
electrically responsive cell | 1.44e-15 | 39 |
electrically active cell | 1.44e-15 | 39 |
CNS neuron (sensu Vertebrata) | 2.09e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.09e-15 | 23 |
embryonic cell | 8.28e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.19e-36 | 73 |
nervous system | 2.34e-35 | 75 |
ectoderm-derived structure | 1.63e-28 | 95 |
ectoderm | 1.63e-28 | 95 |
presumptive ectoderm | 1.63e-28 | 95 |
neurectoderm | 4.97e-27 | 64 |
neural plate | 4.97e-27 | 64 |
presumptive neural plate | 4.97e-27 | 64 |
regional part of nervous system | 1.11e-26 | 54 |
neural tube | 3.15e-25 | 52 |
neural rod | 3.15e-25 | 52 |
future spinal cord | 3.15e-25 | 52 |
neural keel | 3.15e-25 | 52 |
ecto-epithelium | 5.84e-23 | 73 |
structure with developmental contribution from neural crest | 2.68e-22 | 92 |
brain | 7.32e-22 | 47 |
future brain | 7.32e-22 | 47 |
regional part of brain | 1.46e-21 | 46 |
pre-chordal neural plate | 4.14e-20 | 49 |
anterior neural tube | 1.02e-19 | 40 |
regional part of forebrain | 2.35e-19 | 39 |
forebrain | 2.35e-19 | 39 |
future forebrain | 2.35e-19 | 39 |
gray matter | 7.03e-19 | 34 |
brain grey matter | 1.32e-15 | 29 |
regional part of telencephalon | 1.32e-15 | 29 |
telencephalon | 1.32e-15 | 29 |
cerebral cortex | 4.20e-11 | 21 |
cerebral hemisphere | 4.20e-11 | 21 |
pallium | 4.20e-11 | 21 |
regional part of cerebral cortex | 5.15e-09 | 17 |
embryo | 7.50e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.