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MCL coexpression mm9:2932: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!9.07e-22!64;UBERON:0003075!9.07e-22!64;UBERON:0007284!9.07e-22!64;UBERON:0000073!1.40e-21!54;UBERON:0004121!1.23e-20!95;UBERON:0000924!1.23e-20!95;UBERON:0006601!1.23e-20!95;UBERON:0010371!3.12e-20!73;UBERON:0001049!3.97e-20!52;UBERON:0005068!3.97e-20!52;UBERON:0006241!3.97e-20!52;UBERON:0007135!3.97e-20!52;UBERON:0003056!2.50e-19!49;UBERON:0010314!2.83e-19!92;UBERON:0001017!5.60e-19!73;UBERON:0000955!8.20e-19!47;UBERON:0006238!8.20e-19!47;UBERON:0002616!3.84e-18!46;UBERON:0001016!1.53e-17!75;UBERON:0002020!3.76e-16!34;UBERON:0003080!3.83e-15!40;UBERON:0003528!6.73e-15!29;UBERON:0002791!6.73e-15!29;UBERON:0001893!6.73e-15!29;UBERON:0002780!1.82e-14!39;UBERON:0001890!1.82e-14!39;UBERON:0006240!1.82e-14!39;UBERON:0004111!2.51e-14!122;UBERON:0000025!3.71e-14!114;UBERON:0000956!5.96e-11!21;UBERON:0001869!5.96e-11!21;UBERON:0000203!5.96e-11!21;UBERON:0002619!8.23e-10!17;UBERON:0000477!1.99e-08!244;UBERON:0002021!3.37e-07!10;UBERON:0000411!3.37e-07!10;UBERON:0001950!3.37e-07!10;UBERON:0000483!8.02e-07!174;UBERON:0000119!9.90e-07!176
|ontology_enrichment_uberon=UBERON:0002346!9.07e-22!64;UBERON:0003075!9.07e-22!64;UBERON:0007284!9.07e-22!64;UBERON:0000073!1.40e-21!54;UBERON:0004121!1.23e-20!95;UBERON:0000924!1.23e-20!95;UBERON:0006601!1.23e-20!95;UBERON:0010371!3.12e-20!73;UBERON:0001049!3.97e-20!52;UBERON:0005068!3.97e-20!52;UBERON:0006241!3.97e-20!52;UBERON:0007135!3.97e-20!52;UBERON:0003056!2.50e-19!49;UBERON:0010314!2.83e-19!92;UBERON:0001017!5.60e-19!73;UBERON:0000955!8.20e-19!47;UBERON:0006238!8.20e-19!47;UBERON:0002616!3.84e-18!46;UBERON:0001016!1.53e-17!75;UBERON:0002020!3.76e-16!34;UBERON:0003080!3.83e-15!40;UBERON:0003528!6.73e-15!29;UBERON:0002791!6.73e-15!29;UBERON:0001893!6.73e-15!29;UBERON:0002780!1.82e-14!39;UBERON:0001890!1.82e-14!39;UBERON:0006240!1.82e-14!39;UBERON:0004111!2.51e-14!122;UBERON:0000025!3.71e-14!114;UBERON:0000956!5.96e-11!21;UBERON:0001869!5.96e-11!21;UBERON:0000203!5.96e-11!21;UBERON:0002619!8.23e-10!17;UBERON:0000477!1.99e-08!244;UBERON:0002021!3.37e-07!10;UBERON:0000411!3.37e-07!10;UBERON:0001950!3.37e-07!10;UBERON:0000483!8.02e-07!174;UBERON:0000119!9.90e-07!176
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.564138,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.756749,0.932027,1.43154,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.144706,0.563758,0.902078,1.32715,0.50014,0.582863,0.831295,1.33334,0.610669,0.474221,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.971403,1.3966,1.41464,0.940919,1.58082,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,1.03818,0.411601,1.04436,1.20986,0.684144,1.19917,1.16055,1.00151,0.459035,1.32978,0.181575,3.19098,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,1.17262,1.26539,1.05692,1.65883,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,2.57729,1.37508,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,1.75703,1.11251,0.94678,2.3657,0.904334,0.135528
}}
}}

Revision as of 22:09, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:66589886..66589911,+p6@Clu
Mm9::chr14:66589950..66589990,+p4@Clu
Mm9::chr14:66590001..66590019,+p10@Clu


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.20e-0823
neuroblast (sensu Vertebrata)1.20e-0823

Uber Anatomy
Ontology termp-valuen
neurectoderm9.07e-2264
neural plate9.07e-2264
presumptive neural plate9.07e-2264
regional part of nervous system1.40e-2154
ectoderm-derived structure1.23e-2095
ectoderm1.23e-2095
presumptive ectoderm1.23e-2095
ecto-epithelium3.12e-2073
neural tube3.97e-2052
neural rod3.97e-2052
future spinal cord3.97e-2052
neural keel3.97e-2052
pre-chordal neural plate2.50e-1949
structure with developmental contribution from neural crest2.83e-1992
central nervous system5.60e-1973
brain8.20e-1947
future brain8.20e-1947
regional part of brain3.84e-1846
nervous system1.53e-1775
gray matter3.76e-1634
anterior neural tube3.83e-1540
brain grey matter6.73e-1529
regional part of telencephalon6.73e-1529
telencephalon6.73e-1529
regional part of forebrain1.82e-1439
forebrain1.82e-1439
future forebrain1.82e-1439
anatomical conduit2.51e-14122
tube3.71e-14114
cerebral cortex5.96e-1121
cerebral hemisphere5.96e-1121
pallium5.96e-1121
regional part of cerebral cortex8.23e-1017
anatomical cluster1.99e-08244
occipital lobe3.37e-0710
visual cortex3.37e-0710
neocortex3.37e-0710
epithelium8.02e-07174
cell layer9.90e-07176


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}