FFCP PHASE1:Mm9::chr11:33947115..33947242,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16822|HGNC=|MCL_coexpression_id=1285|UniProt=B1ATD1,Q60787,Q8CAS1|association_with_transcript=0bp_to_ENSMUST00000109329,ENSMUST00000169878,NM_010696,uc007iku.1,uc007ikv.1_5end|description=CAGE_peak_1_at_Lcp2_5end|id=chr11:33947115..33947242,+|ontology_enrichment_celltype=CL:0000988!3.53e-08!32;CL:0002032!3.53e-08!32;CL:0000037!3.53e-08!32;CL:0000566!3.53e-08!32;CL:0000837!3.53e-08!32;CL:0000791!2.25e-07!9;CL:0000789!2.25e-07!9;CL:0002420!2.25e-07!9;CL:0002419!2.25e-07!9;CL:0000790!2.25e-07!9;CL:0000624!8.65e-07!8|ontology_enrichment_celltype_v019_2=CL:0000988,2.75e-08,32;CL:0002032,2.75e-08,32;CL:0000037,2.75e-08,32;CL:0000837,2.75e-08,32;CL:0000791,2.01e-07,9;CL:0000789,2.01e-07,9;CL:0002420,2.01e-07,9;CL:0002419,2.01e-07,9;CL:0000790,2.01e-07,9;CL:0000624,7.82e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!5.75e-22!70;UBERON:0002193!5.60e-19!48;UBERON:0002390!1.33e-18!45;UBERON:0003061!1.33e-18!45;UBERON:0005057!2.72e-14!51;UBERON:0004177!8.74e-12!29;UBERON:0003081!7.58e-11!88;UBERON:0001041!2.85e-10!92;UBERON:0000077!4.38e-10!97;UBERON:0000926!5.44e-10!193;UBERON:0004120!5.44e-10!193;UBERON:0006603!5.44e-10!193;UBERON:0003408!4.05e-09!24;UBERON:0002370!5.28e-09!23;UBERON:0000974!5.28e-09!23;UBERON:0004807!5.28e-09!23;UBERON:0005058!5.28e-09!23;UBERON:0003351!5.28e-09!23;UBERON:0009113!5.28e-09!23;UBERON:0003295!5.28e-09!23;UBERON:0009722!5.28e-09!23;UBERON:0005562!5.28e-09!23;UBERON:0007690!5.28e-09!23;UBERON:0006562!1.02e-08!24;UBERON:0001557!1.02e-08!24;UBERON:0001042!1.02e-08!24;UBERON:0008814!1.02e-08!24;UBERON:0009145!1.02e-08!24;UBERON:0002530!1.57e-08!65;UBERON:0002368!2.69e-08!60;UBERON:0001007!5.45e-08!128;UBERON:0001555!5.45e-08!128;UBERON:0007026!5.45e-08!128;UBERON:0003104!6.46e-08!131;UBERON:0009142!6.46e-08!131;UBERON:0004921!6.51e-08!126;UBERON:0004185!6.51e-08!126;UBERON:0004119!6.67e-08!130;UBERON:0000925!6.67e-08!130;UBERON:0006595!6.67e-08!130;UBERON:0002371!1.27e-07!16;UBERON:0000949!3.59e-07!72;UBERON:0001474!4.52e-07!22;UBERON:0004765!4.52e-07!22;UBERON:0001434!4.52e-07!22;UBERON:0001004!6.42e-07!42;UBERON:0000065!9.20e-07!41|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.13e-19,48;UBERON:0002405,2.13e-19,48;UBERON:0002390,5.05e-19,45;UBERON:0003061,5.05e-19,45;UBERON:0004177,3.90e-12,29;UBERON:0005057,3.90e-12,29;UBERON:0001041,8.59e-12,80;UBERON:0000077,2.84e-11,35;UBERON:0003081,2.13e-10,87;UBERON:0003408,1.97e-09,24;UBERON:0002370,2.55e-09,23;UBERON:0000974,2.55e-09,23;UBERON:0004807,2.55e-09,23;UBERON:0005058,2.55e-09,23;UBERON:0003351,2.55e-09,23;UBERON:0009113,2.55e-09,23;UBERON:0003295,2.55e-09,23;UBERON:0009722,2.55e-09,23;UBERON:0005562,2.55e-09,23;UBERON:0007690,2.55e-09,23;UBERON:0006562,5.07e-09,24;UBERON:0001557,5.07e-09,24;UBERON:0001042,5.07e-09,24;UBERON:0008814,5.07e-09,24;UBERON:0009145,5.07e-09,24;UBERON:0001007,5.08e-09,116;UBERON:0001555,5.08e-09,116;UBERON:0007026,5.08e-09,116;UBERON:0004921,5.95e-09,114;UBERON:0004119,6.61e-09,118;UBERON:0000925,6.61e-09,118;UBERON:0006595,6.61e-09,118;UBERON:0002530,1.14e-08,65;UBERON:0002368,1.97e-08,60;UBERON:0000926,1.11e-07,120;UBERON:0004120,1.11e-07,120;UBERON:0006603,1.11e-07,120;UBERON:0002371,1.13e-07,16;UBERON:0001004,2.70e-07,42;UBERON:0000949,3.52e-07,72;UBERON:0000065,3.88e-07,41;UBERON:0001474,5.19e-07,22;UBERON:0004765,5.19e-07,22;UBERON:0001434,5.19e-07,22;UBERON:0005911,8.37e-07,69|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,0,0,220.930006408537,665.085923444474,722.323128229672,360.585041082914,326.507446767912,204.756072997722,189.789693651643,12.3250611871795,25.7143589585079,12.5921138063066,31.0730232877864,33.4559217998003,19.5219239827094,9.77997836737302,6.95036658406197,1.82839852397255,3.83981814704176,5.04700418347774,0,0,0,2.09025761402011,5.79669298447841,3.76941868114018,0,0,0,0,0.332469290716985,0,149.834323803813,127.357661157379,157.580646936113,202.351631882669,204.230600002575,214.59557603977,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0.838913030288682,137.818806982155,148.217365421827,0.771778308107841,2.86533439938757,1.03134418455488,0.809265843438391,0,0,0,0,39.5955875603816,51.4210508534827,36.2344858622511,13.1824048628098,14.6002956022191,1.45165457231869,0.540023753326763,0.630974884054146,1.42825492201902,1.10434270475807,0.61245399607477,0.287536413054709,0,1.10115880999389,1.91531007127782,1.53606533256243,0.395658863190582,0.640413505216868,0,1.67509799400829,1.68828783009504,1.06958773443767,3.24091444021034,1.85083185038834,0.372798891650601,4.54357159999104,0,19.1310562543107,6.88339101585109,0,0.539703191637817,3.24888208723835,0.448026887097336,13.3422199125164,0,0,0,0,0,0,0,0,0,0,10.7332846935916,324.190230326259,12.9144660986398,3.64319186208885,1.52232739156071,2.99800146432876,3.46662073271032,4.70354828542819,4.27266410520897,0.988779870937496,15.9059292611903,66.3457913962406,10.8383789464764,24.9550915860245,13.5765070877862,7.45567044872489,0.87834239103464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| ||
|EntrezGene=16822 | |||
|HGNC= | |||
|MCL_coexpression_id=1285 | |||
|UniProt=B1ATD1,Q60787,Q8CAS1 | |||
|association_with_transcript=0bp_to_ENSMUST00000109329,ENSMUST00000169878,NM_010696,uc007iku.1,uc007ikv.1_5end | |||
|description=CAGE_peak_1_at_Lcp2_5end | |||
|id=chr11:33947115..33947242,+ | |||
|ontology_enrichment_celltype=CL:0000988!3.53e-08!32;CL:0002032!3.53e-08!32;CL:0000037!3.53e-08!32;CL:0000566!3.53e-08!32;CL:0000837!3.53e-08!32;CL:0000791!2.25e-07!9;CL:0000789!2.25e-07!9;CL:0002420!2.25e-07!9;CL:0002419!2.25e-07!9;CL:0000790!2.25e-07!9;CL:0000624!8.65e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.75e-08,32;CL:0002032,2.75e-08,32;CL:0000037,2.75e-08,32;CL:0000837,2.75e-08,32;CL:0000791,2.01e-07,9;CL:0000789,2.01e-07,9;CL:0002420,2.01e-07,9;CL:0002419,2.01e-07,9;CL:0000790,2.01e-07,9;CL:0000624,7.82e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!5.75e-22!70;UBERON:0002193!5.60e-19!48;UBERON:0002390!1.33e-18!45;UBERON:0003061!1.33e-18!45;UBERON:0005057!2.72e-14!51;UBERON:0004177!8.74e-12!29;UBERON:0003081!7.58e-11!88;UBERON:0001041!2.85e-10!92;UBERON:0000077!4.38e-10!97;UBERON:0000926!5.44e-10!193;UBERON:0004120!5.44e-10!193;UBERON:0006603!5.44e-10!193;UBERON:0003408!4.05e-09!24;UBERON:0002370!5.28e-09!23;UBERON:0000974!5.28e-09!23;UBERON:0004807!5.28e-09!23;UBERON:0005058!5.28e-09!23;UBERON:0003351!5.28e-09!23;UBERON:0009113!5.28e-09!23;UBERON:0003295!5.28e-09!23;UBERON:0009722!5.28e-09!23;UBERON:0005562!5.28e-09!23;UBERON:0007690!5.28e-09!23;UBERON:0006562!1.02e-08!24;UBERON:0001557!1.02e-08!24;UBERON:0001042!1.02e-08!24;UBERON:0008814!1.02e-08!24;UBERON:0009145!1.02e-08!24;UBERON:0002530!1.57e-08!65;UBERON:0002368!2.69e-08!60;UBERON:0001007!5.45e-08!128;UBERON:0001555!5.45e-08!128;UBERON:0007026!5.45e-08!128;UBERON:0003104!6.46e-08!131;UBERON:0009142!6.46e-08!131;UBERON:0004921!6.51e-08!126;UBERON:0004185!6.51e-08!126;UBERON:0004119!6.67e-08!130;UBERON:0000925!6.67e-08!130;UBERON:0006595!6.67e-08!130;UBERON:0002371!1.27e-07!16;UBERON:0000949!3.59e-07!72;UBERON:0001474!4.52e-07!22;UBERON:0004765!4.52e-07!22;UBERON:0001434!4.52e-07!22;UBERON:0001004!6.42e-07!42;UBERON:0000065!9.20e-07!41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.13e-19,48;UBERON:0002405,2.13e-19,48;UBERON:0002390,5.05e-19,45;UBERON:0003061,5.05e-19,45;UBERON:0004177,3.90e-12,29;UBERON:0005057,3.90e-12,29;UBERON:0001041,8.59e-12,80;UBERON:0000077,2.84e-11,35;UBERON:0003081,2.13e-10,87;UBERON:0003408,1.97e-09,24;UBERON:0002370,2.55e-09,23;UBERON:0000974,2.55e-09,23;UBERON:0004807,2.55e-09,23;UBERON:0005058,2.55e-09,23;UBERON:0003351,2.55e-09,23;UBERON:0009113,2.55e-09,23;UBERON:0003295,2.55e-09,23;UBERON:0009722,2.55e-09,23;UBERON:0005562,2.55e-09,23;UBERON:0007690,2.55e-09,23;UBERON:0006562,5.07e-09,24;UBERON:0001557,5.07e-09,24;UBERON:0001042,5.07e-09,24;UBERON:0008814,5.07e-09,24;UBERON:0009145,5.07e-09,24;UBERON:0001007,5.08e-09,116;UBERON:0001555,5.08e-09,116;UBERON:0007026,5.08e-09,116;UBERON:0004921,5.95e-09,114;UBERON:0004119,6.61e-09,118;UBERON:0000925,6.61e-09,118;UBERON:0006595,6.61e-09,118;UBERON:0002530,1.14e-08,65;UBERON:0002368,1.97e-08,60;UBERON:0000926,1.11e-07,120;UBERON:0004120,1.11e-07,120;UBERON:0006603,1.11e-07,120;UBERON:0002371,1.13e-07,16;UBERON:0001004,2.70e-07,42;UBERON:0000949,3.52e-07,72;UBERON:0000065,3.88e-07,41;UBERON:0001474,5.19e-07,22;UBERON:0004765,5.19e-07,22;UBERON:0001434,5.19e-07,22;UBERON:0005911,8.37e-07,69 | |||
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| |||
|short_description=p1@Lcp2 | |||
}} |
Revision as of 19:32, 12 September 2013
Short description: | p1@Lcp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lcp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1285 |
Association with transcript: | 0bp_to_ENSMUST00000109329, ENSMUST00000169878, NM_010696, uc007iku.1, uc007ikv.1_5end |
EntrezGene: | Lcp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.75e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.75e-08 | 32 |
hematopoietic stem cell | 2.75e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.75e-08 | 32 |
mature alpha-beta T cell | 2.01e-07 | 9 |
alpha-beta T cell | 2.01e-07 | 9 |
immature T cell | 2.01e-07 | 9 |
mature T cell | 2.01e-07 | 9 |
immature alpha-beta T cell | 2.01e-07 | 9 |
CD4-positive, alpha-beta T cell | 7.82e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.