FFCP PHASE1:Hg19::chr3:194131791..194131795,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C641|description=CAGE_peak_at_chr3:194131791..194131795,-|id=chr3:194131791..194131795,-|ontology_enrichment_celltype=CL:0002057!1.94e-18!42;CL:0000860!1.98e-18!45;CL:0002009!2.19e-16!65;CL:0002194!8.90e-16!63;CL:0000576!8.90e-16!63;CL:0000040!8.90e-16!63;CL:0000559!8.90e-16!63;CL:0000766!3.88e-15!76;CL:0002087!4.26e-15!119;CL:0000557!5.67e-15!71;CL:0000839!7.80e-15!70;CL:0000738!1.12e-14!140;CL:0002031!6.17e-14!124;CL:0000037!1.91e-13!172;CL:0000566!1.91e-13!172;CL:0002032!3.00e-13!165;CL:0000837!3.00e-13!165;CL:0000763!1.02e-12!112;CL:0000049!1.02e-12!112;CL:0000219!1.50e-12!390;CL:0000988!2.38e-12!182;CL:0000134!3.67e-12!358;CL:0002320!1.21e-10!365;CL:0000048!9.56e-07!430|ontology_enrichment_celltype_v019=CL:0000860;1.15e-48;33!CL:0002057;1.15e-48;33!CL:0000473;1.82e-34;39!CL:0000234;1.82e-34;39!CL:0000576;7.17e-25;48!CL:0000766;6.47e-18;69!CL:0000763;3.60e-10;100!CL:0002087;2.75e-09;104!CL:0000738;8.04e-08;136|ontology_enrichment_celltype_v019_2=CL:0000860,4.17e-46,42;CL:0002057,4.17e-46,42;CL:0000473,1.02e-41,48;CL:0000234,1.02e-41,48;CL:0002194,4.08e-35,59;CL:0000576,4.08e-35,59;CL:0000040,4.08e-35,59;CL:0000559,4.08e-35,59;CL:0000839,4.47e-34,66;CL:0000766,8.45e-34,72;CL:0002009,1.36e-33,61;CL:0000557,1.56e-31,67;CL:0002087,1.43e-25,115;CL:0002031,2.28e-25,120;CL:0000763,1.61e-24,108;CL:0000049,1.61e-24,108;CL:0000738,5.91e-24,136;CL:0002032,5.77e-22,161;CL:0000837,5.77e-22,161;CL:0000037,2.66e-21,168;CL:0000988,2.57e-20,177;CL:0000134,1.39e-14,354;CL:0002320,6.71e-14,361;CL:0000219,2.07e-13,386;CL:0000048,1.30e-09,427;CL:0000723,3.34e-09,433;CL:0000034,3.88e-09,441|ontology_enrichment_development_v019=CL:0002057;6.00e-34;42!CL:0000049;5.10e-08;108|ontology_enrichment_disease=DOID:162!5.72e-10!235;DOID:14566!1.59e-09!239;DOID:0050686!9.72e-07!137|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!8.46e-13!80;UBERON:0001474!9.80e-13!86;UBERON:0002384!5.08e-12!375;UBERON:0002390!3.35e-10!102;UBERON:0003061!3.35e-10!102;UBERON:0004765!2.93e-09!101;UBERON:0001434!2.93e-09!101;UBERON:0002193!4.96e-08!112;UBERON:0002405!1.53e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.65e-28,76;UBERON:0001474,4.07e-28,82;UBERON:0004765,1.59e-24,90;UBERON:0002405,4.23e-22,93;UBERON:0002390,1.63e-21,98;UBERON:0003061,1.63e-21,98;UBERON:0001434,7.34e-21,100;UBERON:0002193,2.04e-18,108;UBERON:0002384,1.22e-13,371;UBERON:0003081,1.68e-11,203;UBERON:0002204,3.07e-09,167;UBERON:0000926,6.25e-07,315;UBERON:0004120,6.25e-07,315;UBERON:0006603,6.25e-07,315|phase1_expression=0.363356758541113,0.428201047781966,0.704772020479856,1.0007329835313,2.68176656656373,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0.273748850145768,0.125542639594803,0.152826811495903,0.164201178899891,0.314843125254717,0,1.15148819429164,0.619264493264304,0,0,0,0.92960640696362,1.70603078984906,0,0.553995408531877,5.41470008169383,6.51032612147556,0.223915474239924,0,0.257575567634187,4.9435401185052,1.13362783106643,2.91100873425379,14.1781712512468,7.81218987241469,5.88442104700697,19.8507750702284,6.40401766322752,2.36482229888585,16.2030469946211,5.80936215225443,1.35426486594342,13.5534484470675,5.18521685109907,2.02251136000576,19.8954530041087,3.53021929783703,5.11469700639233,2.96866170168044,5.58498241340569,2.98357325372886,26.1188314765726,7.94339314567596,11.2108004819203,28.391099174012,15.644487552606,5.42972111762792,19.9781835869012,5.89244217580104,4.1140110367315,0,0.425208599930087,0.209658645508376,0.22465726229299,1.35159203557356,0.16072558669708,0,0.19891667719909,0,0,0,0,0.853460445133014,0,0,0,0,1.1384259382189,1.17447437874188,0.764546456250458,0,1.12101712596307,0,0.393419540227666,0.393010762749165,1.23360899399706,0,0,0.473447805734733,0,0.445641827540694,0.883817722424512,0.221533894583621,0.270803863765016,1.66518715643378,0.520237390239513,0.986627427622057,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0.453237370790265,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,1.73789284659359,0,0.670700859703636,0,0.361439152384566,0,0,0,0.486634870302636,0.189069634328136,0.443458794925128,0.527008714158756,0.196468613246569,0,0,0,0,0.26591592103773,0.715471872916026,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.805658634218294,0,0,0,0,0.0892997282840798,0.44905874525234,0,0,0,0,1.31780417436063,0,0,0.993943903390637,0.379891534993739,1.98613771219828,1.72101972449288,1.06400514659507,0,0,0,0,0.269421344139376,0.817309515567294,0,0,0,0.312160076830321,0,0,0.822041490506354,0.323745888736263,0.842704840213491,0.408308342509787,0.368502951935304,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.2268643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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C641 | |||
|description=CAGE_peak_at_chr3:194131791..194131795,- | |||
|id=chr3:194131791..194131795,- | |||
|ontology_enrichment_celltype=CL:0002057!1.94e-18!42;CL:0000860!1.98e-18!45;CL:0002009!2.19e-16!65;CL:0002194!8.90e-16!63;CL:0000576!8.90e-16!63;CL:0000040!8.90e-16!63;CL:0000559!8.90e-16!63;CL:0000766!3.88e-15!76;CL:0002087!4.26e-15!119;CL:0000557!5.67e-15!71;CL:0000839!7.80e-15!70;CL:0000738!1.12e-14!140;CL:0002031!6.17e-14!124;CL:0000037!1.91e-13!172;CL:0000566!1.91e-13!172;CL:0002032!3.00e-13!165;CL:0000837!3.00e-13!165;CL:0000763!1.02e-12!112;CL:0000049!1.02e-12!112;CL:0000219!1.50e-12!390;CL:0000988!2.38e-12!182;CL:0000134!3.67e-12!358;CL:0002320!1.21e-10!365;CL:0000048!9.56e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.15e-48;33!CL:0002057;1.15e-48;33!CL:0000473;1.82e-34;39!CL:0000234;1.82e-34;39!CL:0000576;7.17e-25;48!CL:0000766;6.47e-18;69!CL:0000763;3.60e-10;100!CL:0002087;2.75e-09;104!CL:0000738;8.04e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.17e-46,42;CL:0002057,4.17e-46,42;CL:0000473,1.02e-41,48;CL:0000234,1.02e-41,48;CL:0002194,4.08e-35,59;CL:0000576,4.08e-35,59;CL:0000040,4.08e-35,59;CL:0000559,4.08e-35,59;CL:0000839,4.47e-34,66;CL:0000766,8.45e-34,72;CL:0002009,1.36e-33,61;CL:0000557,1.56e-31,67;CL:0002087,1.43e-25,115;CL:0002031,2.28e-25,120;CL:0000763,1.61e-24,108;CL:0000049,1.61e-24,108;CL:0000738,5.91e-24,136;CL:0002032,5.77e-22,161;CL:0000837,5.77e-22,161;CL:0000037,2.66e-21,168;CL:0000988,2.57e-20,177;CL:0000134,1.39e-14,354;CL:0002320,6.71e-14,361;CL:0000219,2.07e-13,386;CL:0000048,1.30e-09,427;CL:0000723,3.34e-09,433;CL:0000034,3.88e-09,441 | |||
|ontology_enrichment_development_v019=CL:0002057;6.00e-34;42!CL:0000049;5.10e-08;108 | |||
|ontology_enrichment_disease=DOID:162!5.72e-10!235;DOID:14566!1.59e-09!239;DOID:0050686!9.72e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.46e-13!80;UBERON:0001474!9.80e-13!86;UBERON:0002384!5.08e-12!375;UBERON:0002390!3.35e-10!102;UBERON:0003061!3.35e-10!102;UBERON:0004765!2.93e-09!101;UBERON:0001434!2.93e-09!101;UBERON:0002193!4.96e-08!112;UBERON:0002405!1.53e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.65e-28,76;UBERON:0001474,4.07e-28,82;UBERON:0004765,1.59e-24,90;UBERON:0002405,4.23e-22,93;UBERON:0002390,1.63e-21,98;UBERON:0003061,1.63e-21,98;UBERON:0001434,7.34e-21,100;UBERON:0002193,2.04e-18,108;UBERON:0002384,1.22e-13,371;UBERON:0003081,1.68e-11,203;UBERON:0002204,3.07e-09,167;UBERON:0000926,6.25e-07,315;UBERON:0004120,6.25e-07,315;UBERON:0006603,6.25e-07,315 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.704772020479856,1.0007329835313,2.68176656656373,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0.273748850145768,0.125542639594803,0.152826811495903,0.164201178899891,0.314843125254717,0,1.15148819429164,0.619264493264304,0,0,0,0.92960640696362,1.70603078984906,0,0.553995408531877,5.41470008169383,6.51032612147556,0.223915474239924,0,0.257575567634187,4.9435401185052,1.13362783106643,2.91100873425379,14.1781712512468,7.81218987241469,5.88442104700697,19.8507750702284,6.40401766322752,2.36482229888585,16.2030469946211,5.80936215225443,1.35426486594342,13.5534484470675,5.18521685109907,2.02251136000576,19.8954530041087,3.53021929783703,5.11469700639233,2.96866170168044,5.58498241340569,2.98357325372886,26.1188314765726,7.94339314567596,11.2108004819203,28.391099174012,15.644487552606,5.42972111762792,19.9781835869012,5.89244217580104,4.1140110367315,0,0.425208599930087,0.209658645508376,0.22465726229299,1.35159203557356,0.16072558669708,0,0.19891667719909,0,0,0,0,0.853460445133014,0,0,0,0,1.1384259382189,1.17447437874188,0.764546456250458,0,1.12101712596307,0,0.393419540227666,0.393010762749165,1.23360899399706,0,0,0.473447805734733,0,0.445641827540694,0.883817722424512,0.221533894583621,0.270803863765016,1.66518715643378,0.520237390239513,0.986627427622057,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0.453237370790265,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,1.73789284659359,0,0.670700859703636,0,0.361439152384566,0,0,0,0.486634870302636,0.189069634328136,0.443458794925128,0.527008714158756,0.196468613246569,0,0,0,0,0.26591592103773,0.715471872916026,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.805658634218294,0,0,0,0,0.0892997282840798,0.44905874525234,0,0,0,0,1.31780417436063,0,0,0.993943903390637,0.379891534993739,1.98613771219828,1.72101972449288,1.06400514659507,0,0,0,0,0.269421344139376,0.817309515567294,0,0,0,0.312160076830321,0,0,0.822041490506354,0.323745888736263,0.842704840213491,0.408308342509787,0.368502951935304,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.226864366320042,2.15267562826634,0,0,1.20036438433761,0.206105058476878,1.28820270022815,0,3.71307930930786,0.584622030967192,1.7670364197088,0.460249493211497,0,1.06502877754984,0,0.169560592310488,0,0,0,0.121973706129595,0.795178609928912,0.348581828608555,0.207322110030741,0,0.72995471815166,0,0,0,0,0,0.236613600079688,0,0,0.330881918197182,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0.882926198829301,0,0,0.109750285408626,0,0.502644862058154,0,0,0,0,0.115930404975077,0,0,0,0.761016608938393,0,0,0.246217006087397,0,0.594524649154913,0,0,0.283550194484773,0.447792613514241,0,0,2.46331618947972,0,0,0.576479813667846,0.12624243342638,0.190493682876507,0,0,0,0.411309970813294,0,0,0,0,0.1466765716419,0.387815147273333,0,0,0.531876233169741,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.904318131178758,0,0.499864955910285,0,0.502257091432126,6.32501818449095,0,1.14861935834114,0,0.289562613335158,0.410952645100767,0.358121926479791,1.12085143993527,1.18218456121156,1.94064817373566,1.79680250791648,0.76228387266739,0,0,0.167516265334349,0,1.49801404789436,0,0.828831026872071,0,0,0,1.03985430765404,0.535286966391485,4.73107245101804,0.468565659970853,0,0,0,0.664225598535437,0.368738337083406,0.434418072340414,0,0,1.03384013061444,0.862856803274467,0.960548020230999,0,0,0,0.248107807818777,0.61384789315225,0.280660094433074,0.896974044789907,0,2.41280881715411,0,0.308419387605311,0,0.328508624055237,0.519254429183621,0.232420756919918,0,0.200506470303285,0.0920809889358963,0.459257792658427,0.364182336013434,0.786746489756545,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,1.3071772551245,0.256450125116389,0,0,0.309123034943167,1.09883357782012,1.07262349896764,0,0,1.6068392984416,0.193341436584244,0.924291702687866,0.307007349452259,0.964856007391714,0.214840489736547,0,0.426133137080504,0,0.165284915360978,0.192190067365106,0.255225424989168,0,0,1.25924938732256,0,0,0,0,0,0.286249773483982,0.372158369359667,0.316379424718726,0,0,0.42793898803392,0,0,0.359744915166629,1.09814811894422,0.235624804691373,0,0,0,0,0.487426979262569,0,0,0.707027159768564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844430541190656,0.658589785919804,0.379473173765715,0,0.192444225451024,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0.320472213382419,0,0.245040215981032,0.929015875628594,0.432807638929335,0.426851060090485,0.637705090915289,0.399158742865633,0.191505370132367,1.48171507906718,0,2.80797178113459,0.228234679033192,0.783399478865116,0,0.846458889008016,0.321176150207399,1.00899853595524,0.851692475380653,0.343505344755765,0,0.223676107892416,0.667396566847634,0,0,1.23087398947712,0.270455678475983,0,0,0,0.146508179271894,0.485442086998054,0.780103689942349,0,0.23874448473769,0,0,0,0,0,0.988823245360557,1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| |||
|short_description=p@chr3:194131791..194131795,- | |||
}} |
Revision as of 23:26, 12 September 2013
Short description: | p@chr3:194131791..194131795, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:194131791..194131795, - |
Coexpression cluster: | C641_CD14_Neutrophils_Peripheral_Basophils_Whole_Monocytederived_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.17e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.17e-46 | 42 |
defensive cell | 1.02e-41 | 48 |
phagocyte | 1.02e-41 | 48 |
monopoietic cell | 4.08e-35 | 59 |
monocyte | 4.08e-35 | 59 |
monoblast | 4.08e-35 | 59 |
promonocyte | 4.08e-35 | 59 |
myeloid lineage restricted progenitor cell | 4.47e-34 | 66 |
myeloid leukocyte | 8.45e-34 | 72 |
macrophage dendritic cell progenitor | 1.36e-33 | 61 |
granulocyte monocyte progenitor cell | 1.56e-31 | 67 |
nongranular leukocyte | 1.43e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 2.28e-25 | 120 |
myeloid cell | 1.61e-24 | 108 |
common myeloid progenitor | 1.61e-24 | 108 |
leukocyte | 5.91e-24 | 136 |
hematopoietic oligopotent progenitor cell | 5.77e-22 | 161 |
hematopoietic multipotent progenitor cell | 5.77e-22 | 161 |
hematopoietic stem cell | 2.66e-21 | 168 |
hematopoietic cell | 2.57e-20 | 177 |
mesenchymal cell | 1.39e-14 | 354 |
connective tissue cell | 6.71e-14 | 361 |
motile cell | 2.07e-13 | 386 |
multi fate stem cell | 1.30e-09 | 427 |
somatic stem cell | 3.34e-09 | 433 |
stem cell | 3.88e-09 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.65e-28 | 76 |
bone element | 4.07e-28 | 82 |
skeletal element | 1.59e-24 | 90 |
immune system | 4.23e-22 | 93 |
hematopoietic system | 1.63e-21 | 98 |
blood island | 1.63e-21 | 98 |
skeletal system | 7.34e-21 | 100 |
hemolymphoid system | 2.04e-18 | 108 |
connective tissue | 1.22e-13 | 371 |
lateral plate mesoderm | 1.68e-11 | 203 |
musculoskeletal system | 3.07e-09 | 167 |
mesoderm | 6.25e-07 | 315 |
mesoderm-derived structure | 6.25e-07 | 315 |
presumptive mesoderm | 6.25e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.