FFCP PHASE1:Hg19::chr3:238958..238968,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10752|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1939|TSSclassifier=S|UniProt=C9JW79|association_with_transcript=-4bp_to_ENST00000421198_5end|description=CAGE_peak_7_at_CHL1_5end|id=chr3:238958..238968,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;4.00e-09;2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1909;5.68e-09;2|ontology_enrichment_disease_v019_2=DOID:1909,5.51e-09,2|ontology_enrichment_uberon=UBERON:0001049!2.19e-60!57;UBERON:0005068!2.19e-60!57;UBERON:0006241!2.19e-60!57;UBERON:0007135!2.19e-60!57;UBERON:0007023!3.06e-54!115;UBERON:0002616!5.61e-50!59;UBERON:0001017!1.41e-49!82;UBERON:0005743!5.68e-48!86;UBERON:0003075!2.34e-45!86;UBERON:0007284!2.34e-45!86;UBERON:0002780!5.01e-45!41;UBERON:0001890!5.01e-45!41;UBERON:0006240!5.01e-45!41;UBERON:0000955!9.14e-44!69;UBERON:0006238!9.14e-44!69;UBERON:0003080!1.19e-43!42;UBERON:0002346!1.80e-42!90;UBERON:0000073!1.38e-41!94;UBERON:0001016!1.38e-41!94;UBERON:0002020!7.86e-40!34;UBERON:0003528!7.86e-40!34;UBERON:0001893!1.49e-39!34;UBERON:0002791!2.08e-38!33;UBERON:0001869!2.74e-37!32;UBERON:0000956!1.27e-31!25;UBERON:0000203!1.27e-31!25;UBERON:0003056!1.50e-30!61;UBERON:0002619!8.22e-29!22;UBERON:0001950!6.22e-26!20;UBERON:0000153!1.94e-24!129;UBERON:0007811!1.94e-24!129;UBERON:0000033!2.18e-24!123;UBERON:0004121!6.92e-22!169;UBERON:0000924!6.43e-21!173;UBERON:0006601!6.43e-21!173;UBERON:0003076!3.37e-17!15;UBERON:0003057!3.37e-17!15;UBERON:0000025!2.39e-14!194;UBERON:0004733!3.01e-13!12;UBERON:0002028!3.01e-13!12;UBERON:0007277!3.01e-13!12;UBERON:0004732!5.39e-12!13;UBERON:0001871!9.32e-12!7;UBERON:0000064!4.23e-11!219;UBERON:0004111!1.18e-10!241;UBERON:0002420!8.52e-10!9;UBERON:0007245!8.52e-10!9;UBERON:0010009!8.52e-10!9;UBERON:0010011!8.52e-10!9;UBERON:0000454!8.52e-10!9;UBERON:0002680!9.07e-10!9;UBERON:0001895!9.07e-10!9;UBERON:0010092!9.07e-10!9;UBERON:0002308!1.25e-09!9;UBERON:0000125!1.25e-09!9;UBERON:0000477!3.18e-09!286;UBERON:0000475!3.96e-09!365;UBERON:0000200!5.89e-09!6;UBERON:0002298!1.29e-08!8;UBERON:0000481!1.43e-08!347;UBERON:0000349!2.58e-08!5;UBERON:0001872!4.35e-08!5;UBERON:0000483!1.57e-07!309;UBERON:0009663!2.68e-07!7;UBERON:0000119!2.75e-07!312;UBERON:0001894!6.52e-07!7;UBERON:0006222!6.52e-07!7|ontology_enrichment_uberon_v019=UBERON:0002791;2.58e-33;32!UBERON:0002619;1.06e-32;22!UBERON:0000956;1.51e-32;25!UBERON:0000203;1.51e-32;25!UBERON:0001869;1.72e-32;32!UBERON:0003528;3.03e-32;34!UBERON:0002020;3.03e-32;34!UBERON:0001893;1.41e-27;34!UBERON:0001950;8.07e-27;20!UBERON:0002780;8.69e-23;41!UBERON:0001890;8.69e-23;41!UBERON:0000073;1.53e-22;53!UBERON:0002616;1.53e-22;53!UBERON:0001017;6.06e-17;75!UBERON:0001016;9.14e-17;83!UBERON:0000955;1.17e-12;68!UBERON:0000349;4.77e-12;5!UBERON:0000369;1.13e-08;4!UBERON:0002435;1.13e-08;4!UBERON:0000204;1.13e-08;4!UBERON:0001954;1.45e-08;2!UBERON:0003022;1.45e-08;2!UBERON:0002421;1.45e-08;2!UBERON:0002600;1.45e-08;2!UBERON:0001871;2.09e-08;6!UBERON:0001872;1.50e-07;5!UBERON:0004733;1.95e-07;12!UBERON:0002028;1.95e-07;12!UBERON:0002021;2.47e-07;5!UBERON:0011216;5.69e-07;132!UBERON:0007023;6.61e-07;114!UBERON:0004732;7.69e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.99e-40,81;UBERON:0001049,3.74e-40,56;UBERON:0005068,3.74e-40,56;UBERON:0006241,3.74e-40,56;UBERON:0007135,3.74e-40,56;UBERON:0003528,7.24e-37,34;UBERON:0002020,7.24e-37,34;UBERON:0000073,6.42e-36,53;UBERON:0002616,6.42e-36,53;UBERON:0001016,1.14e-35,89;UBERON:0002791,1.48e-35,32;UBERON:0001869,1.48e-35,32;UBERON:0001893,3.00e-33,34;UBERON:0002619,6.04e-33,22;UBERON:0000956,7.82e-33,25;UBERON:0000203,7.82e-33,25;UBERON:0000955,3.13e-31,68;UBERON:0006238,3.13e-31,68;UBERON:0002780,4.99e-30,41;UBERON:0001890,4.99e-30,41;UBERON:0003080,4.99e-30,41;UBERON:0006240,4.99e-30,41;UBERON:0001950,5.37e-27,20;UBERON:0003075,1.98e-25,82;UBERON:0007284,1.98e-25,82;UBERON:0002346,5.99e-24,86;UBERON:0010371,2.67e-22,104;UBERON:0003056,1.00e-18,61;UBERON:0004121,1.16e-17,171;UBERON:0000924,1.16e-17,171;UBERON:0006601,1.16e-17,171;UBERON:0011216,6.52e-17,223;UBERON:0007023,6.95e-15,114;UBERON:0010314,2.23e-13,132;UBERON:0000349,5.50e-12,5;UBERON:0003076,4.78e-11,15;UBERON:0003057,4.78e-11,15;UBERON:0000025,7.00e-10,192;UBERON:0001954,1.19e-08,2;UBERON:0003022,1.19e-08,2;UBERON:0002421,1.19e-08,2;UBERON:0002600,1.19e-08,2;UBERON:0001871,1.41e-08,6;UBERON:0000369,2.10e-08,4;UBERON:0002435,2.10e-08,4;UBERON:0000204,2.10e-08,4;UBERON:0010082,2.10e-08,4;UBERON:0001872,1.51e-07,5;UBERON:0002021,2.45e-07,5;UBERON:0004733,3.46e-07,12;UBERON:0002028,3.46e-07,12;UBERON:0007277,3.46e-07,12|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0,0,0,0,0,0.492484232307152,0.408001382488506,0.940364164434263,1.43117993565528,0.136874425072884,0.125542639594803,2.13957536094264,1.23150884174919,1.49550484495991,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10752 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1939 | |||
|TSSclassifier=S | |||
|UniProt=C9JW79 | |||
|association_with_transcript=-4bp_to_ENST00000421198_5end | |||
|description=CAGE_peak_7_at_CHL1_5end | |||
|id=chr3:238958..238968,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;4.00e-09;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;5.68e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.51e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.19e-60!57;UBERON:0005068!2.19e-60!57;UBERON:0006241!2.19e-60!57;UBERON:0007135!2.19e-60!57;UBERON:0007023!3.06e-54!115;UBERON:0002616!5.61e-50!59;UBERON:0001017!1.41e-49!82;UBERON:0005743!5.68e-48!86;UBERON:0003075!2.34e-45!86;UBERON:0007284!2.34e-45!86;UBERON:0002780!5.01e-45!41;UBERON:0001890!5.01e-45!41;UBERON:0006240!5.01e-45!41;UBERON:0000955!9.14e-44!69;UBERON:0006238!9.14e-44!69;UBERON:0003080!1.19e-43!42;UBERON:0002346!1.80e-42!90;UBERON:0000073!1.38e-41!94;UBERON:0001016!1.38e-41!94;UBERON:0002020!7.86e-40!34;UBERON:0003528!7.86e-40!34;UBERON:0001893!1.49e-39!34;UBERON:0002791!2.08e-38!33;UBERON:0001869!2.74e-37!32;UBERON:0000956!1.27e-31!25;UBERON:0000203!1.27e-31!25;UBERON:0003056!1.50e-30!61;UBERON:0002619!8.22e-29!22;UBERON:0001950!6.22e-26!20;UBERON:0000153!1.94e-24!129;UBERON:0007811!1.94e-24!129;UBERON:0000033!2.18e-24!123;UBERON:0004121!6.92e-22!169;UBERON:0000924!6.43e-21!173;UBERON:0006601!6.43e-21!173;UBERON:0003076!3.37e-17!15;UBERON:0003057!3.37e-17!15;UBERON:0000025!2.39e-14!194;UBERON:0004733!3.01e-13!12;UBERON:0002028!3.01e-13!12;UBERON:0007277!3.01e-13!12;UBERON:0004732!5.39e-12!13;UBERON:0001871!9.32e-12!7;UBERON:0000064!4.23e-11!219;UBERON:0004111!1.18e-10!241;UBERON:0002420!8.52e-10!9;UBERON:0007245!8.52e-10!9;UBERON:0010009!8.52e-10!9;UBERON:0010011!8.52e-10!9;UBERON:0000454!8.52e-10!9;UBERON:0002680!9.07e-10!9;UBERON:0001895!9.07e-10!9;UBERON:0010092!9.07e-10!9;UBERON:0002308!1.25e-09!9;UBERON:0000125!1.25e-09!9;UBERON:0000477!3.18e-09!286;UBERON:0000475!3.96e-09!365;UBERON:0000200!5.89e-09!6;UBERON:0002298!1.29e-08!8;UBERON:0000481!1.43e-08!347;UBERON:0000349!2.58e-08!5;UBERON:0001872!4.35e-08!5;UBERON:0000483!1.57e-07!309;UBERON:0009663!2.68e-07!7;UBERON:0000119!2.75e-07!312;UBERON:0001894!6.52e-07!7;UBERON:0006222!6.52e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;2.58e-33;32!UBERON:0002619;1.06e-32;22!UBERON:0000956;1.51e-32;25!UBERON:0000203;1.51e-32;25!UBERON:0001869;1.72e-32;32!UBERON:0003528;3.03e-32;34!UBERON:0002020;3.03e-32;34!UBERON:0001893;1.41e-27;34!UBERON:0001950;8.07e-27;20!UBERON:0002780;8.69e-23;41!UBERON:0001890;8.69e-23;41!UBERON:0000073;1.53e-22;53!UBERON:0002616;1.53e-22;53!UBERON:0001017;6.06e-17;75!UBERON:0001016;9.14e-17;83!UBERON:0000955;1.17e-12;68!UBERON:0000349;4.77e-12;5!UBERON:0000369;1.13e-08;4!UBERON:0002435;1.13e-08;4!UBERON:0000204;1.13e-08;4!UBERON:0001954;1.45e-08;2!UBERON:0003022;1.45e-08;2!UBERON:0002421;1.45e-08;2!UBERON:0002600;1.45e-08;2!UBERON:0001871;2.09e-08;6!UBERON:0001872;1.50e-07;5!UBERON:0004733;1.95e-07;12!UBERON:0002028;1.95e-07;12!UBERON:0002021;2.47e-07;5!UBERON:0011216;5.69e-07;132!UBERON:0007023;6.61e-07;114!UBERON:0004732;7.69e-07;13 | |||
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|short_description=p7@CHL1 | |||
}} |
Revision as of 23:42, 12 September 2013
Short description: | p7@CHL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_CHL1_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000421198_5end |
EntrezGene: | CHL1 |
HGNC: | 1939 |
UniProt: | C9JW79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanoma | 5.51e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.