FFCP PHASE1:Mm9::chr15:85166717..85166733,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54138|HGNC=|MCL_coexpression_id=3|UniProt=F8WGN7|association_with_transcript=-34bp_to_ENSMUST00000016685_5end|description=CAGE_peak_3_at_Atxn10_5end|id=chr15:85166717..85166733,+|ontology_enrichment_celltype=CL:0000055!6.56e-13!50;CL:0000393!1.39e-12!39;CL:0000211!1.39e-12!39;CL:0002319!1.15e-11!43;CL:0000540!2.19e-11!33;CL:0000047!2.19e-11!33;CL:0000031!2.19e-11!33;CL:0000404!2.19e-11!33;CL:0000221!2.72e-11!44;CL:0000133!2.72e-11!44;CL:0000117!4.41e-11!23;CL:0000337!4.41e-11!23;CL:0002321!4.91e-08!70;CL:0000220!4.91e-08!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.39e-12,39;CL:0000211,1.39e-12,39;CL:0002319,1.15e-11,43;CL:0000540,2.19e-11,33;CL:0000047,2.19e-11,33;CL:0000031,2.19e-11,33;CL:0000404,2.19e-11,33;CL:0000221,2.72e-11,44;CL:0000133,2.72e-11,44;CL:0000117,4.41e-11,23;CL:0000337,4.41e-11,23;CL:0002321,5.07e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.28e-17!75;UBERON:0001016!1.28e-17!75;UBERON:0001017!7.98e-17!73;UBERON:0005743!7.98e-17!73;UBERON:0001049!4.30e-14!52;UBERON:0005068!4.30e-14!52;UBERON:0006241!4.30e-14!52;UBERON:0007135!4.30e-14!52;UBERON:0002020!1.17e-13!34;UBERON:0002616!1.68e-12!49;UBERON:0000955!3.10e-12!50;UBERON:0006238!3.10e-12!50;UBERON:0002791!1.26e-11!29;UBERON:0003528!1.26e-11!29;UBERON:0001893!1.26e-11!29;UBERON:0000025!1.43e-11!114;UBERON:0003080!2.44e-11!40;UBERON:0002346!3.07e-11!71;UBERON:0003075!3.07e-11!71;UBERON:0007284!3.07e-11!71;UBERON:0002780!5.19e-11!39;UBERON:0001890!5.19e-11!39;UBERON:0006240!5.19e-11!39;UBERON:0003056!9.51e-11!49;UBERON:0004121!1.09e-10!102;UBERON:0000924!1.09e-10!102;UBERON:0006601!1.09e-10!102;UBERON:0000033!4.84e-10!63;UBERON:0004111!6.92e-10!122;UBERON:0000475!8.57e-10!200;UBERON:0000956!1.22e-08!21;UBERON:0001869!1.22e-08!21;UBERON:0000203!1.22e-08!21;UBERON:0002619!8.82e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.28e-17,75;UBERON:0001017,7.97e-17,73;UBERON:0000073,1.51e-14,54;UBERON:0001049,4.29e-14,52;UBERON:0005068,4.29e-14,52;UBERON:0006241,4.29e-14,52;UBERON:0007135,4.29e-14,52;UBERON:0002346,4.97e-14,64;UBERON:0003075,4.97e-14,64;UBERON:0007284,4.97e-14,64;UBERON:0002020,1.17e-13,34;UBERON:0004121,9.59e-13,95;UBERON:0000924,9.59e-13,95;UBERON:0006601,9.59e-13,95;UBERON:0003528,1.26e-11,29;UBERON:0002791,1.26e-11,29;UBERON:0001893,1.26e-11,29;UBERON:0002616,1.28e-11,46;UBERON:0000025,1.43e-11,114;UBERON:0000955,2.34e-11,47;UBERON:0006238,2.34e-11,47;UBERON:0003080,2.44e-11,40;UBERON:0002780,5.19e-11,39;UBERON:0001890,5.19e-11,39;UBERON:0006240,5.19e-11,39;UBERON:0003056,9.51e-11,49;UBERON:0004111,6.91e-10,122;UBERON:0010371,8.96e-10,73;UBERON:0000956,1.22e-08,21;UBERON:0001869,1.22e-08,21;UBERON:0000203,1.22e-08,21;UBERON:0010314,7.17e-08,92;UBERON:0002619,8.81e-07,17|phase1_expression=8.96833543786846,1.39590163055744,0.454999239389536,0,0,1.6787927191189,1.86890112476421,4.00282302668886,7.74337971834167,13.3416780003536,13.0125655851384,12.9230897572445,3.0816131387617,3.93391810885488,1.99865857089398,1.21485160433896,2.09868563438444,2.05050407482854,2.60517423850904,1.69755860719212,13.436839843869,4.46809280403984,4.4403964153619,10.5594999043648,5.73523202667925,0.57423196411502,0.430761996159075,1.72376986148711,0.380046838912748,0,1.10865255327652,2.54012269383853,3.69038872550742,0,0.577703239502549,1.32987716286794,0.612508068787107,229.773865274562,160.173745627379,152.868933240349,222.939733963754,194.667963213157,162.160457912405,18.6327290603854,19.0588630692687,14.5001934207728,7.04152209913235,18.7501634487184,18.0142669842267,20.0262796046512,15.3985063787899,21.5628846547457,2.01339127269284,5.80289713609076,2.35265659399725,19.294457702696,12.0344044774278,16.5015069528782,19.624696703381,32.268449735594,41.8328726314078,26.0910289693232,25.789549087223,3.1496490104849,4.94433181283487,4.2628806896766,5.39280198933128,6.14749288514487,26.6482303632788,26.0561460980163,37.437843120546,17.9960120174396,21.4242484723065,24.008196646131,16.8688028992096,28.4957823849107,19.82085857989,16.2162919368188,18.4327839907492,23.4757592159745,19.7613310181205,25.5247551572812,27.080750903134,19.1339287410771,23.5309301576288,22.0971439105251,19.6472919502762,25.7231235238915,36.5757513799279,15.6433129421046,6.95674772884027,12.0459342777394,4.0798280022465,14.0322829825832,17.5439632710871,19.2651561451854,5.33688796500657,16.7021716126497,11.6903702071291,16.2536204274756,9.01397886570755,14.115912515575,20.3844191765317,42.6640021891999,28.1438353314578,23.5624674891842,27.2983200307983,6.96521666286266,2.58937883647172,5.78924342352817,10.0621489524359,7.61163695780353,9.4552353874984,6.33035090321015,4.23319345688537,7.79132866243988,158.204779349999,4.33798070759735,15.9229899350977,5.17653919831709,4.19598885074748,5.33362778448744,0,12.5895742714965,9.63454851341893,1.53274233125155,2.03685711660064,2.99951365496704,1.77898317902291,19.0234112044125,17.8425235099264,15.2041766056566,17.7300806596122,24.548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| ||
|EntrezGene=54138 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=F8WGN7 | |||
|association_with_transcript=-34bp_to_ENSMUST00000016685_5end | |||
|description=CAGE_peak_3_at_Atxn10_5end | |||
|id=chr15:85166717..85166733,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.56e-13!50;CL:0000393!1.39e-12!39;CL:0000211!1.39e-12!39;CL:0002319!1.15e-11!43;CL:0000540!2.19e-11!33;CL:0000047!2.19e-11!33;CL:0000031!2.19e-11!33;CL:0000404!2.19e-11!33;CL:0000221!2.72e-11!44;CL:0000133!2.72e-11!44;CL:0000117!4.41e-11!23;CL:0000337!4.41e-11!23;CL:0002321!4.91e-08!70;CL:0000220!4.91e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.39e-12,39;CL:0000211,1.39e-12,39;CL:0002319,1.15e-11,43;CL:0000540,2.19e-11,33;CL:0000047,2.19e-11,33;CL:0000031,2.19e-11,33;CL:0000404,2.19e-11,33;CL:0000221,2.72e-11,44;CL:0000133,2.72e-11,44;CL:0000117,4.41e-11,23;CL:0000337,4.41e-11,23;CL:0002321,5.07e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.28e-17!75;UBERON:0001016!1.28e-17!75;UBERON:0001017!7.98e-17!73;UBERON:0005743!7.98e-17!73;UBERON:0001049!4.30e-14!52;UBERON:0005068!4.30e-14!52;UBERON:0006241!4.30e-14!52;UBERON:0007135!4.30e-14!52;UBERON:0002020!1.17e-13!34;UBERON:0002616!1.68e-12!49;UBERON:0000955!3.10e-12!50;UBERON:0006238!3.10e-12!50;UBERON:0002791!1.26e-11!29;UBERON:0003528!1.26e-11!29;UBERON:0001893!1.26e-11!29;UBERON:0000025!1.43e-11!114;UBERON:0003080!2.44e-11!40;UBERON:0002346!3.07e-11!71;UBERON:0003075!3.07e-11!71;UBERON:0007284!3.07e-11!71;UBERON:0002780!5.19e-11!39;UBERON:0001890!5.19e-11!39;UBERON:0006240!5.19e-11!39;UBERON:0003056!9.51e-11!49;UBERON:0004121!1.09e-10!102;UBERON:0000924!1.09e-10!102;UBERON:0006601!1.09e-10!102;UBERON:0000033!4.84e-10!63;UBERON:0004111!6.92e-10!122;UBERON:0000475!8.57e-10!200;UBERON:0000956!1.22e-08!21;UBERON:0001869!1.22e-08!21;UBERON:0000203!1.22e-08!21;UBERON:0002619!8.82e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.28e-17,75;UBERON:0001017,7.97e-17,73;UBERON:0000073,1.51e-14,54;UBERON:0001049,4.29e-14,52;UBERON:0005068,4.29e-14,52;UBERON:0006241,4.29e-14,52;UBERON:0007135,4.29e-14,52;UBERON:0002346,4.97e-14,64;UBERON:0003075,4.97e-14,64;UBERON:0007284,4.97e-14,64;UBERON:0002020,1.17e-13,34;UBERON:0004121,9.59e-13,95;UBERON:0000924,9.59e-13,95;UBERON:0006601,9.59e-13,95;UBERON:0003528,1.26e-11,29;UBERON:0002791,1.26e-11,29;UBERON:0001893,1.26e-11,29;UBERON:0002616,1.28e-11,46;UBERON:0000025,1.43e-11,114;UBERON:0000955,2.34e-11,47;UBERON:0006238,2.34e-11,47;UBERON:0003080,2.44e-11,40;UBERON:0002780,5.19e-11,39;UBERON:0001890,5.19e-11,39;UBERON:0006240,5.19e-11,39;UBERON:0003056,9.51e-11,49;UBERON:0004111,6.91e-10,122;UBERON:0010371,8.96e-10,73;UBERON:0000956,1.22e-08,21;UBERON:0001869,1.22e-08,21;UBERON:0000203,1.22e-08,21;UBERON:0010314,7.17e-08,92;UBERON:0002619,8.81e-07,17 | |||
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| |||
|short_description=p3@Atxn10 | |||
}} |
Revision as of 11:28, 13 September 2013
Short description: | p3@Atxn10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Atxn10_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -34bp_to_ENSMUST00000016685_5end |
EntrezGene: | Atxn10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.39e-12 | 39 |
electrically active cell | 1.39e-12 | 39 |
neural cell | 1.15e-11 | 43 |
neuron | 2.19e-11 | 33 |
neuronal stem cell | 2.19e-11 | 33 |
neuroblast | 2.19e-11 | 33 |
electrically signaling cell | 2.19e-11 | 33 |
ectodermal cell | 2.72e-11 | 44 |
neurectodermal cell | 2.72e-11 | 44 |
CNS neuron (sensu Vertebrata) | 4.41e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.41e-11 | 23 |
embryonic cell | 5.07e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.28e-17 | 75 |
central nervous system | 7.97e-17 | 73 |
regional part of nervous system | 1.51e-14 | 54 |
neural tube | 4.29e-14 | 52 |
neural rod | 4.29e-14 | 52 |
future spinal cord | 4.29e-14 | 52 |
neural keel | 4.29e-14 | 52 |
neurectoderm | 4.97e-14 | 64 |
neural plate | 4.97e-14 | 64 |
presumptive neural plate | 4.97e-14 | 64 |
gray matter | 1.17e-13 | 34 |
ectoderm-derived structure | 9.59e-13 | 95 |
ectoderm | 9.59e-13 | 95 |
presumptive ectoderm | 9.59e-13 | 95 |
brain grey matter | 1.26e-11 | 29 |
regional part of telencephalon | 1.26e-11 | 29 |
telencephalon | 1.26e-11 | 29 |
regional part of brain | 1.28e-11 | 46 |
tube | 1.43e-11 | 114 |
brain | 2.34e-11 | 47 |
future brain | 2.34e-11 | 47 |
anterior neural tube | 2.44e-11 | 40 |
regional part of forebrain | 5.19e-11 | 39 |
forebrain | 5.19e-11 | 39 |
future forebrain | 5.19e-11 | 39 |
pre-chordal neural plate | 9.51e-11 | 49 |
anatomical conduit | 6.91e-10 | 122 |
ecto-epithelium | 8.96e-10 | 73 |
cerebral cortex | 1.22e-08 | 21 |
cerebral hemisphere | 1.22e-08 | 21 |
pallium | 1.22e-08 | 21 |
structure with developmental contribution from neural crest | 7.17e-08 | 92 |
regional part of cerebral cortex | 8.81e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.