FFCP PHASE1:Mm9::chr17:56279756..56279807,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20359|HGNC=|MCL_coexpression_id=1|UniProt=O54951,Q3UTK5|association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end|description=CAGE_peak_1_at_Sema6b_5end|id=chr17:56279756..56279807,-|ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-14,23;CL:0000337,1.22e-14,23;CL:0000221,1.54e-14,44;CL:0000133,1.54e-14,44;CL:0002319,4.45e-14,43;CL:0000540,1.22e-12,33;CL:0000047,1.22e-12,33;CL:0000031,1.22e-12,33;CL:0000404,1.22e-12,33;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!3.88e-31!75;UBERON:0001016!3.88e-31!75;UBERON:0004121!5.04e-28!102;UBERON:0000924!5.04e-28!102;UBERON:0006601!5.04e-28!102;UBERON:0001049!2.23e-26!52;UBERON:0005068!2.23e-26!52;UBERON:0006241!2.23e-26!52;UBERON:0007135!2.23e-26!52;UBERON:0002346!4.46e-26!71;UBERON:0003075!4.46e-26!71;UBERON:0007284!4.46e-26!71;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0000033!2.85e-25!63;UBERON:0002616!6.79e-25!49;UBERON:0003056!4.37e-21!49;UBERON:0003080!8.57e-21!40;UBERON:0002020!2.67e-20!34;UBERON:0002780!3.46e-20!39;UBERON:0001890!3.46e-20!39;UBERON:0006240!3.46e-20!39;UBERON:0002791!1.66e-17!29;UBERON:0003528!1.66e-17!29;UBERON:0001893!1.66e-17!29;UBERON:0000153!5.01e-15!94;UBERON:0007811!1.77e-14!86;UBERON:0000956!1.11e-12!21;UBERON:0001869!1.11e-12!21;UBERON:0000203!1.11e-12!21;UBERON:0002619!1.00e-10!17;UBERON:0002021!6.45e-08!10;UBERON:0000411!6.45e-08!10;UBERON:0001950!6.45e-08!10;UBERON:0000468!5.53e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.34e-33,73;UBERON:0001016,4.74e-33,75;UBERON:0000073,2.70e-30,54;UBERON:0001049,1.38e-28,52;UBERON:0005068,1.38e-28,52;UBERON:0006241,1.38e-28,52;UBERON:0007135,1.38e-28,52;UBERON:0004121,1.56e-28,95;UBERON:0000924,1.56e-28,95;UBERON:0006601,1.56e-28,95;UBERON:0002346,2.63e-27,64;UBERON:0003075,2.63e-27,64;UBERON:0007284,2.63e-27,64;UBERON:0000955,2.53e-25,47;UBERON:0006238,2.53e-25,47;UBERON:0002616,9.64e-25,46;UBERON:0010371,9.85e-24,73;UBERON:0003056,8.05e-23,49;UBERON:0003080,1.68e-22,40;UBERON:0002020,5.78e-22,34;UBERON:0002780,7.66e-22,39;UBERON:0001890,7.66e-22,39;UBERON:0006240,7.66e-22,39;UBERON:0003528,6.39e-19,29;UBERON:0002791,6.39e-19,29;UBERON:0001893,6.39e-19,29;UBERON:0010314,3.28e-17,92;UBERON:0000956,1.15e-13,21;UBERON:0001869,1.15e-13,21;UBERON:0000203,1.15e-13,21;UBERON:0002619,1.54e-11,17;UBERON:0002021,1.76e-08,10;UBERON:0000411,1.76e-08,10;UBERON:0001950,1.76e-08,10|phase1_expression=9.12848428497326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0.202475267389826,0,1.10411757875383,0.685572168028694,1.69755860719212,9.18467533631554,3.67376519443276,1.30599894569468,0.159992422793407,0.22940928106717,0,0,0,0,0,0.443461021310609,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.550640256485045,2.34717403304412,3.92445281484804,7.68901639570651,5.44403717407994,2.37976916763116,4.31257693094915,0.503347818173209,0.725362142011344,0,0.257259436035947,0.286533439938757,0,38.6424440241832,44.4352422588508,48.8050180699758,1.35537812827653,0,0,0,0,10.4860038681442,17.6740420447915,20.1157847878447,22.680997639724,18.5085965989216,40.8480907697439,39.5354688303388,23.1507610516263,17.1563393122643,37.6879702510109,42.9451935897616,54.9055553766307,45.0067142440793,43.2587023755036,32.8440640532651,30.7338888628488,46.6235608332306,47.8348218526928,48.4370445452488,38.5963446970505,32.3183715413964,36.3478919359336,1.28734528666413,2.56943304363071,13.0439019915755,0.860423876981386,0,0,0,0,2.80888840263504,0,0,0,12.9575946194546,0,0,0,0,0,0,1.7127581957859,1.29468941823586,4.30482203287992,3.99016251562112,4.56698217468212,4.61230994512117,2.71300752994721,0.940709657085638,2.01066546127481,0.247194967734374,0.433798070759735,0.884610551949874,4.85300549842228,1.98757366614354,0,0,22.5441213698891,30.7886659015779,0.255457055208591,0,0,0.381210681219194,42.24096031216,49.8675657072303,54.2826801127574,52.3211203778752,59.3259861006367,43.0121252238289,43.8051410282946,1.32391173005411,0.995255764880744,0.505445516867349,1.68353484709179,1.69156575851515,4.36813998423599,2.52086981727489,4.52114453507145,4.35433594568498,4.74020765053944,4.59138450342671,5.17406741478031,0.862271971731369,3.78212160335639,4.22282697993477,5.69908904311695,3.05851974148158,1.74126083261083,2.67516777330327,1.59227413454795,0,0.257347907114715,0.568326998791185,0.207125772535502,0.469052119962192,0,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0.583826711835847,0.16455984991348,0.985004784474571,2.10778904819225,0.877199924551994,1.09775057645525,2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| ||
|EntrezGene=20359 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=O54951,Q3UTK5 | |||
|association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | |||
|description=CAGE_peak_1_at_Sema6b_5end | |||
|id=chr17:56279756..56279807,- | |||
|ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-14,23;CL:0000337,1.22e-14,23;CL:0000221,1.54e-14,44;CL:0000133,1.54e-14,44;CL:0002319,4.45e-14,43;CL:0000540,1.22e-12,33;CL:0000047,1.22e-12,33;CL:0000031,1.22e-12,33;CL:0000404,1.22e-12,33;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!3.88e-31!75;UBERON:0001016!3.88e-31!75;UBERON:0004121!5.04e-28!102;UBERON:0000924!5.04e-28!102;UBERON:0006601!5.04e-28!102;UBERON:0001049!2.23e-26!52;UBERON:0005068!2.23e-26!52;UBERON:0006241!2.23e-26!52;UBERON:0007135!2.23e-26!52;UBERON:0002346!4.46e-26!71;UBERON:0003075!4.46e-26!71;UBERON:0007284!4.46e-26!71;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0000033!2.85e-25!63;UBERON:0002616!6.79e-25!49;UBERON:0003056!4.37e-21!49;UBERON:0003080!8.57e-21!40;UBERON:0002020!2.67e-20!34;UBERON:0002780!3.46e-20!39;UBERON:0001890!3.46e-20!39;UBERON:0006240!3.46e-20!39;UBERON:0002791!1.66e-17!29;UBERON:0003528!1.66e-17!29;UBERON:0001893!1.66e-17!29;UBERON:0000153!5.01e-15!94;UBERON:0007811!1.77e-14!86;UBERON:0000956!1.11e-12!21;UBERON:0001869!1.11e-12!21;UBERON:0000203!1.11e-12!21;UBERON:0002619!1.00e-10!17;UBERON:0002021!6.45e-08!10;UBERON:0000411!6.45e-08!10;UBERON:0001950!6.45e-08!10;UBERON:0000468!5.53e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.34e-33,73;UBERON:0001016,4.74e-33,75;UBERON:0000073,2.70e-30,54;UBERON:0001049,1.38e-28,52;UBERON:0005068,1.38e-28,52;UBERON:0006241,1.38e-28,52;UBERON:0007135,1.38e-28,52;UBERON:0004121,1.56e-28,95;UBERON:0000924,1.56e-28,95;UBERON:0006601,1.56e-28,95;UBERON:0002346,2.63e-27,64;UBERON:0003075,2.63e-27,64;UBERON:0007284,2.63e-27,64;UBERON:0000955,2.53e-25,47;UBERON:0006238,2.53e-25,47;UBERON:0002616,9.64e-25,46;UBERON:0010371,9.85e-24,73;UBERON:0003056,8.05e-23,49;UBERON:0003080,1.68e-22,40;UBERON:0002020,5.78e-22,34;UBERON:0002780,7.66e-22,39;UBERON:0001890,7.66e-22,39;UBERON:0006240,7.66e-22,39;UBERON:0003528,6.39e-19,29;UBERON:0002791,6.39e-19,29;UBERON:0001893,6.39e-19,29;UBERON:0010314,3.28e-17,92;UBERON:0000956,1.15e-13,21;UBERON:0001869,1.15e-13,21;UBERON:0000203,1.15e-13,21;UBERON:0002619,1.54e-11,17;UBERON:0002021,1.76e-08,10;UBERON:0000411,1.76e-08,10;UBERON:0001950,1.76e-08,10 | |||
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| |||
|short_description=p1@Sema6b | |||
}} |
Revision as of 14:58, 13 September 2013
Short description: | p1@Sema6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sema6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000001256, NM_001130456, uc008dbe.1_5end |
EntrezGene: | Sema6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.22e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-14 | 23 |
ectodermal cell | 1.54e-14 | 44 |
neurectodermal cell | 1.54e-14 | 44 |
neural cell | 4.45e-14 | 43 |
neuron | 1.22e-12 | 33 |
neuronal stem cell | 1.22e-12 | 33 |
neuroblast | 1.22e-12 | 33 |
electrically signaling cell | 1.22e-12 | 33 |
electrically responsive cell | 2.06e-08 | 39 |
electrically active cell | 2.06e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.34e-33 | 73 |
nervous system | 4.74e-33 | 75 |
regional part of nervous system | 2.70e-30 | 54 |
neural tube | 1.38e-28 | 52 |
neural rod | 1.38e-28 | 52 |
future spinal cord | 1.38e-28 | 52 |
neural keel | 1.38e-28 | 52 |
ectoderm-derived structure | 1.56e-28 | 95 |
ectoderm | 1.56e-28 | 95 |
presumptive ectoderm | 1.56e-28 | 95 |
neurectoderm | 2.63e-27 | 64 |
neural plate | 2.63e-27 | 64 |
presumptive neural plate | 2.63e-27 | 64 |
brain | 2.53e-25 | 47 |
future brain | 2.53e-25 | 47 |
regional part of brain | 9.64e-25 | 46 |
ecto-epithelium | 9.85e-24 | 73 |
pre-chordal neural plate | 8.05e-23 | 49 |
anterior neural tube | 1.68e-22 | 40 |
gray matter | 5.78e-22 | 34 |
regional part of forebrain | 7.66e-22 | 39 |
forebrain | 7.66e-22 | 39 |
future forebrain | 7.66e-22 | 39 |
brain grey matter | 6.39e-19 | 29 |
regional part of telencephalon | 6.39e-19 | 29 |
telencephalon | 6.39e-19 | 29 |
structure with developmental contribution from neural crest | 3.28e-17 | 92 |
cerebral cortex | 1.15e-13 | 21 |
cerebral hemisphere | 1.15e-13 | 21 |
pallium | 1.15e-13 | 21 |
regional part of cerebral cortex | 1.54e-11 | 17 |
occipital lobe | 1.76e-08 | 10 |
visual cortex | 1.76e-08 | 10 |
neocortex | 1.76e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.