FFCP PHASE1:Hg19::chr5:36680430..36680455,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6507|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10941|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000506178_5end|coexpression_cluster_id=C2558|description=CAGE_peak_6_at_SLC1A3_5end|id=chr5:36680430..36680455,+|ontology_enrichment_celltype=CL:0002194!2.59e-54!63;CL:0000576!2.59e-54!63;CL:0000040!2.59e-54!63;CL:0000559!2.59e-54!63;CL:0002009!3.18e-52!65;CL:0000839!1.05e-49!70;CL:0000557!8.28e-49!71;CL:0000766!1.10e-44!76;CL:0002057!6.94e-44!42;CL:0000860!3.02e-40!45;CL:0000763!1.45e-28!112;CL:0000049!1.45e-28!112;CL:0002087!1.08e-23!119;CL:0002031!4.34e-22!124;CL:0000738!3.96e-19!140;CL:0002032!5.25e-15!165;CL:0000837!5.25e-15!165;CL:0000037!1.01e-14!172;CL:0000566!1.01e-14!172;CL:0000988!3.43e-13!182;CL:0002619!8.50e-08!3;CL:0000235!9.16e-08!10|ontology_enrichment_celltype_v019=CL:0000473;2.83e-79;39!CL:0000234;2.83e-79;39!CL:0000860;7.38e-69;33!CL:0002057;7.38e-69;33!CL:0000576;6.10e-51;48!CL:0000766;7.71e-42;69!CL:0000235;1.53e-33;6!CL:0002619;5.37e-18;3!CL:0000763;1.04e-17;100!CL:0002087;3.78e-15;104!CL:0000738;1.44e-13;136!CL:0002393;2.11e-08;6!CL:0002397;2.11e-08;6|ontology_enrichment_celltype_v019_2=CL:0002194,1.03e-111,59;CL:0000576,1.03e-111,59;CL:0000040,1.03e-111,59;CL:0000559,1.03e-111,59;CL:0002009,6.51e-108,61;CL:0000473,4.19e-103,48;CL:0000234,4.19e-103,48;CL:0000839,2.11e-99,66;CL:0000557,7.53e-98,67;CL:0000766,1.00e-90,72;CL:0000860,4.37e-75,42;CL:0002057,4.37e-75,42;CL:0000763,1.05e-58,108;CL:0000049,1.05e-58,108;CL:0002087,8.76e-55,115;CL:0002031,2.93e-52,120;CL:0000738,2.03e-45,136;CL:0002032,1.99e-37,161;CL:0000837,1.99e-37,161;CL:0000037,1.30e-35,168;CL:0000235,1.53e-33,6;CL:0000988,1.74e-33,177;CL:0002619,4.93e-18,3;CL:0000134,1.64e-13,354;CL:0002320,4.03e-13,361;CL:0000219,9.66e-12,386;CL:0000048,4.73e-10,427;CL:0000723,8.11e-10,433;CL:0000034,1.62e-09,441|ontology_enrichment_development_v019=CL:0002057;2.89e-56;42!CL:0000049;7.83e-17;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!9.35e-42!80;UBERON:0001474!7.11e-38!86;UBERON:0002390!7.12e-38!102;UBERON:0003061!7.12e-38!102;UBERON:0002193!2.89e-36!112;UBERON:0002405!5.79e-35!115;UBERON:0004765!1.08e-31!101;UBERON:0001434!1.08e-31!101;UBERON:0007023!4.65e-20!115;UBERON:0002204!2.12e-16!167;UBERON:0003081!3.24e-16!216;UBERON:0000062!1.19e-12!511;UBERON:0000923!1.12e-09!604;UBERON:0005291!1.12e-09!604;UBERON:0006598!1.12e-09!604;UBERON:0002532!1.12e-09!604;UBERON:0002050!1.27e-09!605;UBERON:0005423!1.27e-09!605;UBERON:0001893!2.62e-09!34;UBERON:0001049!2.71e-09!57;UBERON:0005068!2.71e-09!57;UBERON:0006241!2.71e-09!57;UBERON:0007135!2.71e-09!57;UBERON:0000922!3.10e-09!612;UBERON:0000467!4.04e-09!625;UBERON:0000480!4.57e-09!626;UBERON:0002791!2.25e-08!33;UBERON:0002780!3.30e-08!41;UBERON:0001890!3.30e-08!41;UBERON:0006240!3.30e-08!41;UBERON:0000468!5.76e-08!659;UBERON:0003080!6.33e-08!42;UBERON:0005743!1.04e-07!86;UBERON:0001017!1.29e-07!82;UBERON:0001869!1.87e-07!32;UBERON:0002619!3.16e-07!22;UBERON:0003075!4.47e-07!86;UBERON:0007284!4.47e-07!86;UBERON:0002616!6.33e-07!59;UBERON:0002020!8.55e-07!34;UBERON:0003528!8.55e-07!34|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.08e-85,76;UBERON:0001474,4.75e-79,82;UBERON:0004765,1.49e-71,90;UBERON:0002405,4.51e-69,93;UBERON:0002390,2.87e-65,98;UBERON:0003061,2.87e-65,98;UBERON:0001434,7.49e-64,100;UBERON:0002193,1.05e-58,108;UBERON:0002204,7.33e-36,167;UBERON:0003081,2.14e-28,203;UBERON:0000926,5.26e-16,315;UBERON:0004120,5.26e-16,315;UBERON:0006603,5.26e-16,315;UBERON:0002384,1.26e-13,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,2.60707781711184,1.51907609501096,9.85228086655667,22.6725566213286,12.6212028140751,0,1.51150377475524,0.485168122375632,5.34586784883075,9.45686142450199,8.05236564327269,0.28769239232215,0.768482119587302,1.41889337933151,4.48169384957604,8.39130088658974,10.8341189275473,1.12945403725563,1.63743690034707,4.26974620445661,6.73384563215986,7.70229664982625,3.83602275479425,0,0.398927315243264,0.426224750532694,7.54544020434318,10.7803192691317,12.4564449799115,0.251248665256743,1.5644487552606,1.73751075764093,3.63239701580021,13.2579948955523,12.0255707227536,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0.649094787309367,1.21890816109487,1.99436940778298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66299114001014,10.9982004615442,11.2959683339433,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6507 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10941 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000506178_5end | |||
|coexpression_cluster_id=C2558 | |||
|description=CAGE_peak_6_at_SLC1A3_5end | |||
|id=chr5:36680430..36680455,+ | |||
|ontology_enrichment_celltype=CL:0002194!2.59e-54!63;CL:0000576!2.59e-54!63;CL:0000040!2.59e-54!63;CL:0000559!2.59e-54!63;CL:0002009!3.18e-52!65;CL:0000839!1.05e-49!70;CL:0000557!8.28e-49!71;CL:0000766!1.10e-44!76;CL:0002057!6.94e-44!42;CL:0000860!3.02e-40!45;CL:0000763!1.45e-28!112;CL:0000049!1.45e-28!112;CL:0002087!1.08e-23!119;CL:0002031!4.34e-22!124;CL:0000738!3.96e-19!140;CL:0002032!5.25e-15!165;CL:0000837!5.25e-15!165;CL:0000037!1.01e-14!172;CL:0000566!1.01e-14!172;CL:0000988!3.43e-13!182;CL:0002619!8.50e-08!3;CL:0000235!9.16e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.83e-79;39!CL:0000234;2.83e-79;39!CL:0000860;7.38e-69;33!CL:0002057;7.38e-69;33!CL:0000576;6.10e-51;48!CL:0000766;7.71e-42;69!CL:0000235;1.53e-33;6!CL:0002619;5.37e-18;3!CL:0000763;1.04e-17;100!CL:0002087;3.78e-15;104!CL:0000738;1.44e-13;136!CL:0002393;2.11e-08;6!CL:0002397;2.11e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.03e-111,59;CL:0000576,1.03e-111,59;CL:0000040,1.03e-111,59;CL:0000559,1.03e-111,59;CL:0002009,6.51e-108,61;CL:0000473,4.19e-103,48;CL:0000234,4.19e-103,48;CL:0000839,2.11e-99,66;CL:0000557,7.53e-98,67;CL:0000766,1.00e-90,72;CL:0000860,4.37e-75,42;CL:0002057,4.37e-75,42;CL:0000763,1.05e-58,108;CL:0000049,1.05e-58,108;CL:0002087,8.76e-55,115;CL:0002031,2.93e-52,120;CL:0000738,2.03e-45,136;CL:0002032,1.99e-37,161;CL:0000837,1.99e-37,161;CL:0000037,1.30e-35,168;CL:0000235,1.53e-33,6;CL:0000988,1.74e-33,177;CL:0002619,4.93e-18,3;CL:0000134,1.64e-13,354;CL:0002320,4.03e-13,361;CL:0000219,9.66e-12,386;CL:0000048,4.73e-10,427;CL:0000723,8.11e-10,433;CL:0000034,1.62e-09,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-56;42!CL:0000049;7.83e-17;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.35e-42!80;UBERON:0001474!7.11e-38!86;UBERON:0002390!7.12e-38!102;UBERON:0003061!7.12e-38!102;UBERON:0002193!2.89e-36!112;UBERON:0002405!5.79e-35!115;UBERON:0004765!1.08e-31!101;UBERON:0001434!1.08e-31!101;UBERON:0007023!4.65e-20!115;UBERON:0002204!2.12e-16!167;UBERON:0003081!3.24e-16!216;UBERON:0000062!1.19e-12!511;UBERON:0000923!1.12e-09!604;UBERON:0005291!1.12e-09!604;UBERON:0006598!1.12e-09!604;UBERON:0002532!1.12e-09!604;UBERON:0002050!1.27e-09!605;UBERON:0005423!1.27e-09!605;UBERON:0001893!2.62e-09!34;UBERON:0001049!2.71e-09!57;UBERON:0005068!2.71e-09!57;UBERON:0006241!2.71e-09!57;UBERON:0007135!2.71e-09!57;UBERON:0000922!3.10e-09!612;UBERON:0000467!4.04e-09!625;UBERON:0000480!4.57e-09!626;UBERON:0002791!2.25e-08!33;UBERON:0002780!3.30e-08!41;UBERON:0001890!3.30e-08!41;UBERON:0006240!3.30e-08!41;UBERON:0000468!5.76e-08!659;UBERON:0003080!6.33e-08!42;UBERON:0005743!1.04e-07!86;UBERON:0001017!1.29e-07!82;UBERON:0001869!1.87e-07!32;UBERON:0002619!3.16e-07!22;UBERON:0003075!4.47e-07!86;UBERON:0007284!4.47e-07!86;UBERON:0002616!6.33e-07!59;UBERON:0002020!8.55e-07!34;UBERON:0003528!8.55e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.08e-85,76;UBERON:0001474,4.75e-79,82;UBERON:0004765,1.49e-71,90;UBERON:0002405,4.51e-69,93;UBERON:0002390,2.87e-65,98;UBERON:0003061,2.87e-65,98;UBERON:0001434,7.49e-64,100;UBERON:0002193,1.05e-58,108;UBERON:0002204,7.33e-36,167;UBERON:0003081,2.14e-28,203;UBERON:0000926,5.26e-16,315;UBERON:0004120,5.26e-16,315;UBERON:0006603,5.26e-16,315;UBERON:0002384,1.26e-13,371 | |||
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|short_description=p6@SLC1A3 | |||
}} |
Revision as of 15:33, 13 September 2013
Short description: | p6@SLC1A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SLC1A3_5end |
Coexpression cluster: | C2558_CD14_Monocytederived_Macrophage_spleen_dura_lymph_left |
Association with transcript: | 0bp_to_ENST00000506178_5end |
EntrezGene: | SLC1A3 |
HGNC: | 10941 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.03e-111 | 59 |
monocyte | 1.03e-111 | 59 |
monoblast | 1.03e-111 | 59 |
promonocyte | 1.03e-111 | 59 |
macrophage dendritic cell progenitor | 6.51e-108 | 61 |
defensive cell | 4.19e-103 | 48 |
phagocyte | 4.19e-103 | 48 |
myeloid lineage restricted progenitor cell | 2.11e-99 | 66 |
granulocyte monocyte progenitor cell | 7.53e-98 | 67 |
myeloid leukocyte | 1.00e-90 | 72 |
classical monocyte | 4.37e-75 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.37e-75 | 42 |
myeloid cell | 1.05e-58 | 108 |
common myeloid progenitor | 1.05e-58 | 108 |
nongranular leukocyte | 8.76e-55 | 115 |
hematopoietic lineage restricted progenitor cell | 2.93e-52 | 120 |
leukocyte | 2.03e-45 | 136 |
hematopoietic oligopotent progenitor cell | 1.99e-37 | 161 |
hematopoietic multipotent progenitor cell | 1.99e-37 | 161 |
hematopoietic stem cell | 1.30e-35 | 168 |
macrophage | 1.53e-33 | 6 |
hematopoietic cell | 1.74e-33 | 177 |
adult endothelial progenitor cell | 4.93e-18 | 3 |
mesenchymal cell | 1.64e-13 | 354 |
connective tissue cell | 4.03e-13 | 361 |
motile cell | 9.66e-12 | 386 |
multi fate stem cell | 4.73e-10 | 427 |
somatic stem cell | 8.11e-10 | 433 |
stem cell | 1.62e-09 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.08e-85 | 76 |
bone element | 4.75e-79 | 82 |
skeletal element | 1.49e-71 | 90 |
immune system | 4.51e-69 | 93 |
hematopoietic system | 2.87e-65 | 98 |
blood island | 2.87e-65 | 98 |
skeletal system | 7.49e-64 | 100 |
hemolymphoid system | 1.05e-58 | 108 |
musculoskeletal system | 7.33e-36 | 167 |
lateral plate mesoderm | 2.14e-28 | 203 |
mesoderm | 5.26e-16 | 315 |
mesoderm-derived structure | 5.26e-16 | 315 |
presumptive mesoderm | 5.26e-16 | 315 |
connective tissue | 1.26e-13 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.