FFCP PHASE1:Hg19::chr5:72744445..72744466,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2297 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3802 | |||
|TSSclassifier=S | |||
|UniProt=Q16676 | |||
|association_with_transcript=-93bp_to_ENST00000328926,NM_004472,uc003kcp.2_5end | |||
|coexpression_cluster_id=C2827 | |||
|description=CAGE_peak_2_at_FOXD1_5end | |||
|id=chr5:72744445..72744466,- | |||
|ontology_enrichment_celltype=CL:0000055!9.15e-38!180;CL:0000057!3.85e-20!75;CL:0000183!2.22e-14!59;CL:0000359!5.97e-14!32;CL:0000192!1.72e-13!42;CL:0000514!1.72e-13!42;CL:0000187!7.76e-13!54;CL:0000680!1.71e-12!57;CL:0000056!1.71e-12!57;CL:0000355!1.71e-12!57;CL:0002620!4.67e-10!23;CL:0000393!8.85e-10!60;CL:0000211!8.85e-10!60;CL:0000548!1.03e-09!679;CL:0000004!1.03e-09!679;CL:0000255!1.03e-09!679;CL:0000220!2.06e-09!246;CL:0000012!4.41e-09!682;CL:0002321!4.57e-09!248 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.57e-14;32!CL:0002620;5.15e-11;23!CL:0000057;5.29e-10;73!CL:0000192;8.35e-10;43!CL:0000187;2.98e-07;55!CL:0002320;4.47e-07;188!CL:0002539;5.15e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.88e-22,76;CL:0000359,6.42e-15,32;CL:0000192,2.16e-13,43;CL:0000514,2.16e-13,43;CL:0000187,3.34e-13,55;CL:0000680,5.18e-13,58;CL:0000056,5.18e-13,58;CL:0000355,5.18e-13,58;CL:0002620,3.79e-11,23;CL:0000393,3.70e-10,61;CL:0000211,3.70e-10,61;CL:0002321,1.03e-08,250;CL:0002539,7.27e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;8.35e-10;43!CL:0000355;2.43e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.32e-25!365;UBERON:0002100!1.21e-17!216;UBERON:0005256!8.40e-17!143;UBERON:0000914!5.08e-16!83;UBERON:0002329!5.08e-16!83;UBERON:0003077!5.08e-16!83;UBERON:0003059!5.08e-16!83;UBERON:0007282!5.08e-16!83;UBERON:0009618!5.08e-16!83;UBERON:0007285!5.08e-16!83;UBERON:0003102!2.05e-13!95;UBERON:0000486!1.37e-12!82;UBERON:0003104!1.52e-12!238;UBERON:0009142!1.52e-12!238;UBERON:0004290!1.63e-12!70;UBERON:0000481!3.20e-12!347;UBERON:0002199!7.00e-11!45;UBERON:0002416!7.00e-11!45;UBERON:0001134!1.77e-10!61;UBERON:0002036!1.77e-10!61;UBERON:0003082!1.77e-10!61;UBERON:0002097!2.57e-10!40;UBERON:0002385!4.76e-10!63;UBERON:0001015!4.76e-10!63;UBERON:0000383!4.76e-10!63;UBERON:0001637!8.20e-08!42;UBERON:0003509!8.20e-08!42;UBERON:0004572!8.20e-08!42;UBERON:0000119!2.02e-07!312;UBERON:0000468!2.98e-07!659;UBERON:0000483!8.27e-07!309;UBERON:0004573!8.59e-07!33;UBERON:0004571!8.59e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.63e-07;41!UBERON:0004573;2.60e-07;33!UBERON:0004571;2.60e-07;33!UBERON:0002199;4.78e-07;46!UBERON:0002416;4.78e-07;46!UBERON:0004237;5.15e-07;10!UBERON:0004695;5.15e-07;10!UBERON:0002111;5.15e-07;10!UBERON:0004178;5.15e-07;10!UBERON:0001434;6.58e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.23e-14,78;UBERON:0002100,8.69e-14,199;UBERON:0007524,1.13e-13,73;UBERON:0002329,2.99e-13,71;UBERON:0003059,2.99e-13,71;UBERON:0007282,2.99e-13,71;UBERON:0004290,2.99e-13,71;UBERON:0009618,2.99e-13,71;UBERON:0003077,3.03e-13,72;UBERON:0007285,3.03e-13,72;UBERON:0000486,5.17e-13,83;UBERON:0003102,9.35e-13,99;UBERON:0003104,1.18e-12,160;UBERON:0009142,1.18e-12,160;UBERON:0001134,5.54e-11,62;UBERON:0002036,5.54e-11,62;UBERON:0003082,5.54e-11,62;UBERON:0005256,9.54e-11,122;UBERON:0002199,2.27e-10,46;UBERON:0002416,2.27e-10,46;UBERON:0002385,4.33e-10,64;UBERON:0001015,4.33e-10,64;UBERON:0000383,4.33e-10,64;UBERON:0002097,6.36e-10,41;UBERON:0001637,2.04e-09,42;UBERON:0003509,2.04e-09,42;UBERON:0004572,2.04e-09,42;UBERON:0004573,2.57e-08,33;UBERON:0004571,2.57e-08,33;UBERON:0000033,7.59e-08,56;UBERON:0004237,7.27e-07,10;UBERON:0004695,7.27e-07,10;UBERON:0002111,7.27e-07,10;UBERON:0004178,7.27e-07,10 | |||
|phase1_expression=5.81370813665781,7.27941781229343,5.77913056793482,5.00366491765652,7.59833860526389,2.61701557230111,5.06599756336621,2.52687949370732,0.261185628199839,2.94880723801811,2.09340350391728,1.52908960491121,6.33040747748289,5.81701858912219,5.63375538737457,4.03395087871065,9.04041792035965,6.57279081348636,7.3189919818576,2.83178433576612,4.89601658986207,5.64218498660558,3.14859585844162,1.77936752594749,1.25542639594803,0,0,0,0,0,0,0,2.10844143144775,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17366355134002,4.69870898099936,7.52006865953834,6.95263291011954,2.3858578411533,22.3852040339212,2.6469748805939,5.76496433402666,7.99296549807447,0.327447688744282,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,13.9152146474689,7.34456967654563,8.87141511448566,2.86836620748814,2.4826786753885,4.48542080113846,11.7423895302675,16.0333906471154,0.311211035399766,0.269421344139376,0.163461903113459,14.6816704815583,20.1661573568,3.04617861383936,3.74592092196385,4.56377457235559,3.28787097213962,3.75790395660048,2.75184005425824,4.07307339436521,3.87892925384297,7.73856199064138,5.16628905878827,13.0680314301026,11.6215456760922,0,2.15585442544872,4.54507507675979,4.62938523526267,3.3247693858102,9.2185300384976,10.4205850571667,8.26309323986282,3.40296549480063,11.660326319776,16.2303615502111,21.1931901159562,8.40255069036326,15.1487217980505,7.21393512127762,10.422543954569,14.5147645727489,22.2156371767533,7.82544700156755,17.21333104611,2.90962902273861,7.4552014428489,15.0120626359184,13.3952867925285,3.47869535693934,2.18196896472668,1.72082757233402,0.121973706129595,0,3.36962434321603,1.34759371519982,1.7662459561294,0,1.56449532329816,16.0810234548221,12.4321429217232,1.85747171212792,2.88751792667834,1.41968160047813,1.34867752062481,1.20505514941741,2.09558548191549,1.96091499683166,0.949082476444386,0.808987848960987,1.56977172100277,0.38474715694639,0,19.6338483324824,0.4115740113314,0,0,0,0.590789906681404,0,2.58275720940538,5.31860211925429,4.93876284338815,0,9.34919443428167,0.925884451585296,8.47101593806844,3.11980435583874,5.77325368101093,1.85488647960123,4.10930429825376,0.144366447761074,0,0,0,0,0,0,0,1.87467667973554,4.19955320497149,6.09632918142262,7.52291590703926,8.4283842169049,11.8848630541215,0,0,0,0,0,0,0,0,1.71072446022705,0.616964956219941,0,0,7.28852048244845,6.97536110133248,13.3475680194129,1.93907573636667,0,2.535908257668,1.32969058292435,2.08014873822732,3.08648849114571,4.25547396069835,6.12771011737029,4.14636181608628,0.542621605391443,0.823240336780769,1.30294473717494,2.84313558994037,0.791951872933429,1.80863626235752,6.10073421020206,3.59902768255405,0,0,0,5.5113716763064,5.7430967917057,2.85273810081437,4.63300181336253,0,2.50685348535854,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,4.9076596687656,9.00306937907419,7.86668568729233,13.5181059995025,8.02930449587228,4.1002627908823,7.73133338951907,13.8435205874751,9.09630016223939,15.5209606938757,13.2845119707087,31.1583894835478,2.17209036170207,80.6700768746491,66.9129676431169,0,0,0,0.303127571446259,1.66435439510497,0.907170879989041,8.43566546583841,7.67309866440312,10.9457436828899,9.48229704492187,12.7926812266676,11.903190164627,20.7785293022987,6.01417805830357,4.26148140751505,5.99528238900807,3.11552657510173,3.83494248917865,1.57117284469109,15.6395046836562,1.56537681191024,0.68888668898764,1.63882051206045,1.70461739447251,4.06079651616671,6.62331899097967,15.6869953835371,1.46139224653261,2.84989398010764,0,0,7.77297297967702,4.62681758070868,13.8182683147365,19.0642114064844,2.80363900349542,1.66215201785745,9.85048920777585,0,0,18.9773092586128,5.9042636225947,2.60302715731442,0.206082023295445,3.29650073346036,2.80532299729999,0.574265537996172,0.650060246036521,19.2820715812991,8.70036464629098,1.69453478826109,1.99554777143968,2.75673144969061,2.14840489736547,1.30515024522806,2.04543905798642,5.2528901031575,1.65284915360978,0.384380134730212,0.382838137483752,0.809262246844399,52.9923926198906,21.4072395844835,20.2140808346574,5.23657086299351,11.1784266366575,19.1385258256516,4.07713282028624,2.71937284809783,14.1420180356674,2.84741482246853,0.953150969619124,14.586174104746,4.70732886837312,9.86430068570404,17.2688700843831,0.539617372749944,0.274537029736055,0.353437207037059,10.3113065602391,1.58510321173008,9.26768603725758,6.82687234725426,2.92456187557541,11.6215161432431,1.09199929126389,1.55545975149084,6.78048699721457,17.643690993476,11.2784625791007,8.33056681982149,7.52408194546694,3.9353685122798,12.1746226177622,20.7581743726833,20.2820833823214,4.15892921391749,5.30544821470854,12.4834868018438,0.354761064070598,4.01104507065562,0.32929489295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| |||
|short_description=p2@FOXD1 | |||
}} |
Revision as of 16:22, 13 September 2013
Short description: | p2@FOXD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FOXD1_5end |
Coexpression cluster: | C2827_Pericytes_Osteoblast_Smooth_astrocytoma_Fibroblast_transitionalcell_alveolar |
Association with transcript: | -93bp_to_ENST00000328926, NM_004472, uc003kcp.2_5end |
EntrezGene: | FOXD1 |
HGNC: | 3802 |
UniProt: | Q16676 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.88e-22 | 76 |
vascular associated smooth muscle cell | 6.42e-15 | 32 |
smooth muscle cell | 2.16e-13 | 43 |
smooth muscle myoblast | 2.16e-13 | 43 |
muscle cell | 3.34e-13 | 55 |
muscle precursor cell | 5.18e-13 | 58 |
myoblast | 5.18e-13 | 58 |
multi-potent skeletal muscle stem cell | 5.18e-13 | 58 |
skin fibroblast | 3.79e-11 | 23 |
electrically responsive cell | 3.70e-10 | 61 |
electrically active cell | 3.70e-10 | 61 |
embryonic cell | 1.03e-08 | 250 |
aortic smooth muscle cell | 7.27e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.23e-14 | 78 |
trunk | 8.69e-14 | 199 |
dense mesenchyme tissue | 1.13e-13 | 73 |
somite | 2.99e-13 | 71 |
presomitic mesoderm | 2.99e-13 | 71 |
presumptive segmental plate | 2.99e-13 | 71 |
dermomyotome | 2.99e-13 | 71 |
trunk paraxial mesoderm | 2.99e-13 | 71 |
paraxial mesoderm | 3.03e-13 | 72 |
presumptive paraxial mesoderm | 3.03e-13 | 72 |
multilaminar epithelium | 5.17e-13 | 83 |
surface structure | 9.35e-13 | 99 |
mesenchyme | 1.18e-12 | 160 |
entire embryonic mesenchyme | 1.18e-12 | 160 |
skeletal muscle tissue | 5.54e-11 | 62 |
striated muscle tissue | 5.54e-11 | 62 |
myotome | 5.54e-11 | 62 |
trunk mesenchyme | 9.54e-11 | 122 |
integument | 2.27e-10 | 46 |
integumental system | 2.27e-10 | 46 |
muscle tissue | 4.33e-10 | 64 |
musculature | 4.33e-10 | 64 |
musculature of body | 4.33e-10 | 64 |
skin of body | 6.36e-10 | 41 |
artery | 2.04e-09 | 42 |
arterial blood vessel | 2.04e-09 | 42 |
arterial system | 2.04e-09 | 42 |
systemic artery | 2.57e-08 | 33 |
systemic arterial system | 2.57e-08 | 33 |
head | 7.59e-08 | 56 |
blood vessel smooth muscle | 7.27e-07 | 10 |
arterial system smooth muscle | 7.27e-07 | 10 |
artery smooth muscle tissue | 7.27e-07 | 10 |
aorta smooth muscle tissue | 7.27e-07 | 10 |
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