FFCP PHASE1:Mm9::chr19:55987079..55987098,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=141|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55987079..55987098,+|id=chr19:55987079..55987098,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002613,2.22e-18,3;CL:0002610,1.37e-17,3;CL:0000117,3.57e-15,23;CL:0000337,3.57e-15,23;CL:0000393,9.54e-11,39;CL:0000211,9.54e-11,39;CL:0000540,2.63e-10,33;CL:0000047,2.63e-10,33;CL:0000031,2.63e-10,33;CL:0000404,2.63e-10,33;CL:0000120,1.69e-08,3;CL:0002319,1.08e-07,43;CL:0000221,1.70e-07,44;CL:0000133,1.70e-07,44;CL:0002321,8.27e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.37e-17,3;UBERON:0002275,1.37e-17,3;UBERON:0000369,2.98e-11,5;UBERON:0002435,2.98e-11,5;UBERON:0000204,2.98e-11,5;UBERON:0010082,2.98e-11,5;UBERON:0002420,3.30e-07,8;UBERON:0007245,3.30e-07,8;UBERON:0010009,3.30e-07,8;UBERON:0010011,3.30e-07,8;UBERON:0000454,3.30e-07,8|phase1_expression=0.160148847104794,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,1.00717454380462,0.304130793658544,0.550640256485045,0.782391344348039,0.218025156380447,0.219686182734472,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0.515672092277442,0.809265843438391,3.70293685490423,1.90149421051854,0,0,0,0.988866362566974,0,0.599200221036809,0.384218305321555,0.103689612308478,0.135005938331691,0,0,0.441737081903227,0,0,0,3.30347642998166,2.29837208553338,1.99688493233117,6.98997324970027,13.9061218275663,4.16730696445408,0.279182999001381,0,0,0.883885756421003,0,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0.896053774194671,0.280888840263504,0.340860645156116,0,0,0.14084341977668,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.11418387971906,0.517875767294343,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0.587943535678524,0.251333182659351,0.247194967734374,0.144599356919912,0,0,0.220841518460394,0.484875253135222,0,0,0,0.510914110417183,0,0,0,0.748953197024114,0,0.251308704225729,0.173824320192276,0,1.24672826735736,0.811206315338788,0.509196819251581,0,0,0.210441855886474,0.520481771850815,0,0.180062129805349,0.150704817835715,0.340182495756639,0.640568601424249,0,0,0.431135985865684,0.756424320671277,0.703804496655795,0.219195732427575,1.11218899690239,0.348252166522167,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0.710234206755631,0.393528463494808,0.462801338662135,0.465067889500816,0.536546802799238,0,0.16455984991348,0.164167464079095,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,0,0,0.330418782983798,0.264450566663544,0.213288250535234,0,0,0.403367049246685,0.667134131534611,0.190225626112559,0.474529061544512,0.494096864172033,0,0.994782360205754,0,0,0.432276099749388,0.199141273254367,0,0,0,0.814605311381257,0,0.280543279561274,0.126473074248515,0,0,0,0,0,0,0,0,0.241177159752417,0.25462585178142,0.287696137450811,0.486405680325106,0.274561413188081,2.87536413054709,0.372140947668503,0.624075346229121,0.505157755894224,0.179397413521912,0.482443521363367,0.739012760666419,0.189491411770485,0.325929952884052,0.169745085775188,0,0.167506257441816,0.238043640886014,0.195133647857799,0.315270288212382,0.44292937929755,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,1.10374698521893,0,0.468846746368813,0.327869890753351,0,0.631016438832513,0,0.646270193198397,0.716906393857656,0.445597348164788,0.283076530788832,0,0.292255857911312,0,0,0,0.35613120733451,0.651547837414304,0.164970122972535,0,0,0.604647113929502,0.754420319023592,0,0,0.775284879504663,0.363533729477506,0.356497378384721,0.948110273807448,0,0,0,0.900305470156551,0.258717367565509,0.857348140126369,0,0.891844088010353,0,0.608929898229199,0,0,0,0,0.161464426695906,0.180938774784468,0.238744688006273,0.328281799490123,0.874442509889552,0,0.170870880797853,0.206386867963223,0.740778109478847,0.188368457004691,0,0,0,0.139951452323658,0,0,0.474503990371703,0,0.324016022465404,0,0.87345025498471,0.269728692769641,0.247960367176008,0,0.388844919875379,0,0,0.149516546043979,0,0.388902376688095,0.387479470433193,0.337912250981556,0.352071715937262,0.5208175393758,0.104859344425711,0,0.288030006257865,0,0,0,0.25984164595559,0.179026695667481,0,0,0,0.201932899896295,0.228620419965,0,0,0,0,0.226730383615211,0.221985953374065,0.179427713218951,0,0,0,0.36630324853453,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.415149390336707,0.798049746802062,0.512200817262403,0,0.209613162627982,0.367687016900028,0.44449345560323,0.824140228955577,0.320919209591815,0,0.50695859978048,0,0.37456602987953,0.192075457214608,0.402048282689293,0,0,0.192909220463705,0,0.441596760403192,1.02860775715625,0.354951612318675,0.238436189947321,0.436039249896986,0.094109380415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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=141 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:55987079..55987098,+ | |||
|id=chr19:55987079..55987098,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,2.22e-18,3;CL:0002610,1.37e-17,3;CL:0000117,3.57e-15,23;CL:0000337,3.57e-15,23;CL:0000393,9.54e-11,39;CL:0000211,9.54e-11,39;CL:0000540,2.63e-10,33;CL:0000047,2.63e-10,33;CL:0000031,2.63e-10,33;CL:0000404,2.63e-10,33;CL:0000120,1.69e-08,3;CL:0002319,1.08e-07,43;CL:0000221,1.70e-07,44;CL:0000133,1.70e-07,44;CL:0002321,8.27e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.37e-17,3;UBERON:0002275,1.37e-17,3;UBERON:0000369,2.98e-11,5;UBERON:0002435,2.98e-11,5;UBERON:0000204,2.98e-11,5;UBERON:0010082,2.98e-11,5;UBERON:0002420,3.30e-07,8;UBERON:0007245,3.30e-07,8;UBERON:0010009,3.30e-07,8;UBERON:0010011,3.30e-07,8;UBERON:0000454,3.30e-07,8 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,1.00717454380462,0.304130793658544,0.550640256485045,0.782391344348039,0.218025156380447,0.219686182734472,0.194429899074283,0.419959264876088,0,0,0,0,0,0,0.515672092277442,0.809265843438391,3.70293685490423,1.90149421051854,0,0,0,0.988866362566974,0,0.599200221036809,0.384218305321555,0.103689612308478,0.135005938331691,0,0,0.441737081903227,0,0,0,3.30347642998166,2.29837208553338,1.99688493233117,6.98997324970027,13.9061218275663,4.16730696445408,0.279182999001381,0,0,0.883885756421003,0,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0.896053774194671,0.280888840263504,0.340860645156116,0,0,0.14084341977668,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.11418387971906,0.517875767294343,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0.587943535678524,0.251333182659351,0.247194967734374,0.144599356919912,0,0,0.220841518460394,0.484875253135222,0,0,0,0.510914110417183,0,0,0,0.748953197024114,0,0.251308704225729,0.173824320192276,0,1.24672826735736,0.811206315338788,0.509196819251581,0,0,0.210441855886474,0.520481771850815,0,0.180062129805349,0.150704817835715,0.340182495756639,0.640568601424249,0,0,0.431135985865684,0.756424320671277,0.703804496655795,0.219195732427575,1.11218899690239,0.348252166522167,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0.710234206755631,0.393528463494808,0.462801338662135,0.465067889500816,0.536546802799238,0,0.16455984991348,0.164167464079095,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,0,0,0.330418782983798,0.264450566663544,0.213288250535234,0,0,0.403367049246685,0.667134131534611,0.190225626112559,0.474529061544512,0.494096864172033,0,0.994782360205754,0,0,0.432276099749388,0.199141273254367,0,0,0,0.814605311381257,0,0.280543279561274,0.126473074248515,0,0,0,0,0,0,0,0,0.241177159752417,0.25462585178142,0.287696137450811,0.486405680325106,0.274561413188081,2.87536413054709,0.372140947668503,0.624075346229121,0.505157755894224,0.179397413521912,0.482443521363367,0.739012760666419,0.189491411770485,0.325929952884052,0.169745085775188,0,0.167506257441816,0.238043640886014,0.195133647857799,0.315270288212382,0.44292937929755,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,1.10374698521893,0,0.468846746368813,0.327869890753351,0,0.631016438832513,0,0.646270193198397,0.716906393857656,0.445597348164788,0.283076530788832,0,0.292255857911312,0,0,0,0.35613120733451,0.651547837414304,0.164970122972535,0,0,0.604647113929502,0.754420319023592,0,0,0.775284879504663,0.363533729477506,0.356497378384721,0.948110273807448,0,0,0,0.900305470156551,0.258717367565509,0.857348140126369,0,0.891844088010353,0,0.608929898229199,0,0,0,0,0.161464426695906,0.180938774784468,0.238744688006273,0.328281799490123,0.874442509889552,0,0.170870880797853,0.206386867963223,0.740778109478847,0.188368457004691,0,0,0,0.139951452323658,0,0,0.474503990371703,0,0.324016022465404,0,0.87345025498471,0.269728692769641,0.247960367176008,0,0.388844919875379,0,0,0.149516546043979,0,0.388902376688095,0.387479470433193,0.337912250981556,0.352071715937262,0.5208175393758,0.104859344425711,0,0.288030006257865,0,0,0,0.25984164595559,0.179026695667481,0,0,0,0.201932899896295,0.228620419965,0,0,0,0,0.226730383615211,0.221985953374065,0.179427713218951,0,0,0,0.36630324853453,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.415149390336707,0.798049746802062,0.512200817262403,0,0.209613162627982,0.367687016900028,0.44449345560323,0.824140228955577,0.320919209591815,0,0.50695859978048,0,0.37456602987953,0.192075457214608,0.402048282689293,0,0,0.192909220463705,0,0.441596760403192,1.02860775715625,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0.407412341537585,0,0.593175090620871,0.197008964751127,0.818462086339379,0.154936841185966,0.578719832943424,1.24905288968973,0,0,0.57386499620653,0,0 | |||
|short_description=p@chr19:55987079..55987098,+ | |||
}} |
Revision as of 18:08, 13 September 2013
Short description: | p@chr19:55987079..55987098, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55987079..55987098, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 2.22e-18 | 3 |
raphe nuclei neuron | 1.37e-17 | 3 |
CNS neuron (sensu Vertebrata) | 3.57e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.57e-15 | 23 |
electrically responsive cell | 9.54e-11 | 39 |
electrically active cell | 9.54e-11 | 39 |
neuron | 2.63e-10 | 33 |
neuronal stem cell | 2.63e-10 | 33 |
neuroblast | 2.63e-10 | 33 |
electrically signaling cell | 2.63e-10 | 33 |
granule cell | 1.69e-08 | 3 |
neural cell | 1.08e-07 | 43 |
ectodermal cell | 1.70e-07 | 44 |
neurectodermal cell | 1.70e-07 | 44 |
embryonic cell | 8.27e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.37e-17 | 3 |
reticular formation | 1.37e-17 | 3 |
corpus striatum | 2.98e-11 | 5 |
striatum | 2.98e-11 | 5 |
ventral part of telencephalon | 2.98e-11 | 5 |
future corpus striatum | 2.98e-11 | 5 |
basal ganglion | 3.30e-07 | 8 |
nuclear complex of neuraxis | 3.30e-07 | 8 |
aggregate regional part of brain | 3.30e-07 | 8 |
collection of basal ganglia | 3.30e-07 | 8 |
cerebral subcortex | 3.30e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.