FFCP PHASE1:Hg19::chr6:154677866..154677872,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26034|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21204|TSSclassifier=S|UniProt=Q8WWN9|association_with_transcript=0bp_to_ENST00000367220_5end|description=CAGE_peak_11_at_IPCEF1_5end|id=chr6:154677866..154677872,-|ontology_enrichment_celltype=CL:0000766!2.29e-32!76;CL:0002009!8.07e-32!65;CL:0002194!3.39e-31!63;CL:0000576!3.39e-31!63;CL:0000040!3.39e-31!63;CL:0000559!3.39e-31!63;CL:0002057!2.50e-29!42;CL:0000763!2.73e-29!112;CL:0000049!2.73e-29!112;CL:0000557!3.99e-28!71;CL:0000839!6.38e-27!70;CL:0000860!9.56e-27!45;CL:0000037!1.53e-22!172;CL:0000566!1.53e-22!172;CL:0000738!7.95e-22!140;CL:0002032!3.63e-21!165;CL:0000837!3.63e-21!165;CL:0002087!1.23e-20!119;CL:0000988!2.37e-20!182;CL:0002031!2.30e-16!124|ontology_enrichment_celltype_v019=CL:0000576;5.13e-16;48!CL:0000860;3.07e-12;33!CL:0002057;3.07e-12;33!CL:0000766;6.05e-12;69!CL:0000775;4.80e-11;3!CL:0000473;7.49e-09;39!CL:0000234;7.49e-09;39|ontology_enrichment_celltype_v019_2=CL:0000766,5.00e-22,72;CL:0002194,1.40e-20,59;CL:0000576,1.40e-20,59;CL:0000040,1.40e-20,59;CL:0000559,1.40e-20,59;CL:0002009,7.87e-20,61;CL:0000860,2.30e-18,42;CL:0002057,2.30e-18,42;CL:0000839,3.73e-18,66;CL:0000557,7.54e-18,67;CL:0000473,7.81e-16,48;CL:0000234,7.81e-16,48;CL:0000763,9.69e-14,108;CL:0000049,9.69e-14,108;CL:0000775,5.06e-11,3;CL:0000738,2.63e-10,136;CL:0002087,2.22e-09,115;CL:0002031,6.95e-09,120;CL:0002032,3.02e-08,161;CL:0000837,3.02e-08,161;CL:0000037,8.84e-08,168;CL:0002393,1.78e-07,9;CL:0002397,1.78e-07,9;CL:0000988,3.11e-07,177|ontology_enrichment_development_v019=CL:0002057;1.01e-13;42!UBERON:0006222;1.83e-08;1!CL:0000049;3.23e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:225;6.48e-09;1|ontology_enrichment_disease_v019_2=DOID:225,5.59e-09,1|ontology_enrichment_uberon=UBERON:0002390!2.68e-30!102;UBERON:0003061!2.68e-30!102;UBERON:0002193!6.22e-29!112;UBERON:0002371!1.23e-23!80;UBERON:0007023!1.25e-23!115;UBERON:0001474!1.79e-22!86;UBERON:0001049!2.68e-21!57;UBERON:0005068!2.68e-21!57;UBERON:0006241!2.68e-21!57;UBERON:0007135!2.68e-21!57;UBERON:0002405!8.73e-19!115;UBERON:0004765!1.66e-18!101;UBERON:0001434!1.66e-18!101;UBERON:0002616!3.14e-17!59;UBERON:0002020!4.43e-17!34;UBERON:0003528!4.43e-17!34;UBERON:0001893!5.21e-17!34;UBERON:0002780!1.77e-16!41;UBERON:0001890!1.77e-16!41;UBERON:0006240!1.77e-16!41;UBERON:0003080!6.17e-16!42;UBERON:0002791!7.37e-16!33;UBERON:0001017!5.44e-15!82;UBERON:0005743!7.63e-15!86;UBERON:0000955!2.18e-14!69;UBERON:0006238!2.18e-14!69;UBERON:0001869!2.42e-14!32;UBERON:0003075!4.26e-13!86;UBERON:0007284!4.26e-13!86;UBERON:0000073!1.47e-12!94;UBERON:0001016!1.47e-12!94;UBERON:0002346!4.05e-12!90;UBERON:0002619!8.38e-12!22;UBERON:0001950!3.25e-11!20;UBERON:0000200!3.69e-10!6;UBERON:0000956!5.06e-10!25;UBERON:0000203!5.06e-10!25;UBERON:0003056!5.38e-10!61;UBERON:0002308!2.05e-09!9;UBERON:0000125!2.05e-09!9;UBERON:0002298!2.79e-08!8;UBERON:0003081!3.66e-08!216;UBERON:0002204!5.94e-07!167;UBERON:0002420!6.91e-07!9;UBERON:0007245!6.91e-07!9;UBERON:0010009!6.91e-07!9;UBERON:0010011!6.91e-07!9;UBERON:0000454!6.91e-07!9;UBERON:0006331!9.10e-07!3|ontology_enrichment_uberon_v019=UBERON:0002336;1.83e-08;1!UBERON:0002038;1.83e-08;1!UBERON:0011215;1.83e-08;1!UBERON:0001018;1.83e-08;1!UBERON:0009661;1.83e-08;1!UBERON:0002950;1.83e-08;1!UBERON:0002473;1.83e-08;1!UBERON:0005340;1.83e-08;1!UBERON:0003544;1.83e-08;1!UBERON:0005970;1.83e-08;1!UBERON:0002316;1.83e-08;1!UBERON:0001020;1.83e-08;1!UBERON:0001891;1.83e-08;1!UBERON:0002437;1.83e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.64e-17,98;UBERON:0003061,1.64e-17,98;UBERON:0002193,1.32e-15,108;UBERON:0002371,1.87e-15,76;UBERON:0001474,3.78e-14,82;UBERON:0004765,1.13e-12,90;UBERON:0002405,3.47e-12,93;UBERON:0001434,3.69e-11,100;UBERON:0002336,9.46e-09,1;UBERON:0011215,9.46e-09,1;UBERON:0001018,9.46e-09,1;UBERON:0002473,9.46e-09,1;UBERON:0005340,9.46e-09,1;UBERON:0003544,9.46e-09,1;UBERON:0005970,9.46e-09,1;UBERON:0002316,9.46e-09,1;UBERON:0001020,9.46e-09,1;UBERON:0002437,9.46e-09,1;UBERON:0002038,2.46e-08,1;UBERON:0009661,2.46e-08,1;UBERON:0002950,2.46e-08,1;UBERON:0001891,2.46e-08,1;UBERON:0009616,2.46e-08,1;UBERON:0010286,2.46e-08,1;UBERON:0001049,6.60e-07,56;UBERON:0005068,6.60e-07,56;UBERON:0006241,6.60e-07,56;UBERON:0007135,6.60e-07,56;UBERON:0003081,7.85e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0.377875943688809,0.485168122375632,0.232429036905685,0.822335776043652,0.619412741790207,0.28769239232215,0.768482119587302,1.18241114944293,0.344745680736619,1.93645405075148,0,0,0.818718450173537,0,0,0.641858054152187,0.639337125799041,0.329851300186716,0.199463657621632,0.426224750532694,0,1.13477044938228,0,0.75374599577023,2.08593167368081,1.52032191293582,0,0,0,0.422510572623884,1.06302149982522,1.0482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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26034 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21204 | |||
|TSSclassifier=S | |||
|UniProt=Q8WWN9 | |||
|association_with_transcript=0bp_to_ENST00000367220_5end | |||
|description=CAGE_peak_11_at_IPCEF1_5end | |||
|id=chr6:154677866..154677872,- | |||
|ontology_enrichment_celltype=CL:0000766!2.29e-32!76;CL:0002009!8.07e-32!65;CL:0002194!3.39e-31!63;CL:0000576!3.39e-31!63;CL:0000040!3.39e-31!63;CL:0000559!3.39e-31!63;CL:0002057!2.50e-29!42;CL:0000763!2.73e-29!112;CL:0000049!2.73e-29!112;CL:0000557!3.99e-28!71;CL:0000839!6.38e-27!70;CL:0000860!9.56e-27!45;CL:0000037!1.53e-22!172;CL:0000566!1.53e-22!172;CL:0000738!7.95e-22!140;CL:0002032!3.63e-21!165;CL:0000837!3.63e-21!165;CL:0002087!1.23e-20!119;CL:0000988!2.37e-20!182;CL:0002031!2.30e-16!124 | |||
|ontology_enrichment_celltype_v019=CL:0000576;5.13e-16;48!CL:0000860;3.07e-12;33!CL:0002057;3.07e-12;33!CL:0000766;6.05e-12;69!CL:0000775;4.80e-11;3!CL:0000473;7.49e-09;39!CL:0000234;7.49e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.00e-22,72;CL:0002194,1.40e-20,59;CL:0000576,1.40e-20,59;CL:0000040,1.40e-20,59;CL:0000559,1.40e-20,59;CL:0002009,7.87e-20,61;CL:0000860,2.30e-18,42;CL:0002057,2.30e-18,42;CL:0000839,3.73e-18,66;CL:0000557,7.54e-18,67;CL:0000473,7.81e-16,48;CL:0000234,7.81e-16,48;CL:0000763,9.69e-14,108;CL:0000049,9.69e-14,108;CL:0000775,5.06e-11,3;CL:0000738,2.63e-10,136;CL:0002087,2.22e-09,115;CL:0002031,6.95e-09,120;CL:0002032,3.02e-08,161;CL:0000837,3.02e-08,161;CL:0000037,8.84e-08,168;CL:0002393,1.78e-07,9;CL:0002397,1.78e-07,9;CL:0000988,3.11e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.01e-13;42!UBERON:0006222;1.83e-08;1!CL:0000049;3.23e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:225;6.48e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:225,5.59e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.68e-30!102;UBERON:0003061!2.68e-30!102;UBERON:0002193!6.22e-29!112;UBERON:0002371!1.23e-23!80;UBERON:0007023!1.25e-23!115;UBERON:0001474!1.79e-22!86;UBERON:0001049!2.68e-21!57;UBERON:0005068!2.68e-21!57;UBERON:0006241!2.68e-21!57;UBERON:0007135!2.68e-21!57;UBERON:0002405!8.73e-19!115;UBERON:0004765!1.66e-18!101;UBERON:0001434!1.66e-18!101;UBERON:0002616!3.14e-17!59;UBERON:0002020!4.43e-17!34;UBERON:0003528!4.43e-17!34;UBERON:0001893!5.21e-17!34;UBERON:0002780!1.77e-16!41;UBERON:0001890!1.77e-16!41;UBERON:0006240!1.77e-16!41;UBERON:0003080!6.17e-16!42;UBERON:0002791!7.37e-16!33;UBERON:0001017!5.44e-15!82;UBERON:0005743!7.63e-15!86;UBERON:0000955!2.18e-14!69;UBERON:0006238!2.18e-14!69;UBERON:0001869!2.42e-14!32;UBERON:0003075!4.26e-13!86;UBERON:0007284!4.26e-13!86;UBERON:0000073!1.47e-12!94;UBERON:0001016!1.47e-12!94;UBERON:0002346!4.05e-12!90;UBERON:0002619!8.38e-12!22;UBERON:0001950!3.25e-11!20;UBERON:0000200!3.69e-10!6;UBERON:0000956!5.06e-10!25;UBERON:0000203!5.06e-10!25;UBERON:0003056!5.38e-10!61;UBERON:0002308!2.05e-09!9;UBERON:0000125!2.05e-09!9;UBERON:0002298!2.79e-08!8;UBERON:0003081!3.66e-08!216;UBERON:0002204!5.94e-07!167;UBERON:0002420!6.91e-07!9;UBERON:0007245!6.91e-07!9;UBERON:0010009!6.91e-07!9;UBERON:0010011!6.91e-07!9;UBERON:0000454!6.91e-07!9;UBERON:0006331!9.10e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002336;1.83e-08;1!UBERON:0002038;1.83e-08;1!UBERON:0011215;1.83e-08;1!UBERON:0001018;1.83e-08;1!UBERON:0009661;1.83e-08;1!UBERON:0002950;1.83e-08;1!UBERON:0002473;1.83e-08;1!UBERON:0005340;1.83e-08;1!UBERON:0003544;1.83e-08;1!UBERON:0005970;1.83e-08;1!UBERON:0002316;1.83e-08;1!UBERON:0001020;1.83e-08;1!UBERON:0001891;1.83e-08;1!UBERON:0002437;1.83e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.64e-17,98;UBERON:0003061,1.64e-17,98;UBERON:0002193,1.32e-15,108;UBERON:0002371,1.87e-15,76;UBERON:0001474,3.78e-14,82;UBERON:0004765,1.13e-12,90;UBERON:0002405,3.47e-12,93;UBERON:0001434,3.69e-11,100;UBERON:0002336,9.46e-09,1;UBERON:0011215,9.46e-09,1;UBERON:0001018,9.46e-09,1;UBERON:0002473,9.46e-09,1;UBERON:0005340,9.46e-09,1;UBERON:0003544,9.46e-09,1;UBERON:0005970,9.46e-09,1;UBERON:0002316,9.46e-09,1;UBERON:0001020,9.46e-09,1;UBERON:0002437,9.46e-09,1;UBERON:0002038,2.46e-08,1;UBERON:0009661,2.46e-08,1;UBERON:0002950,2.46e-08,1;UBERON:0001891,2.46e-08,1;UBERON:0009616,2.46e-08,1;UBERON:0010286,2.46e-08,1;UBERON:0001049,6.60e-07,56;UBERON:0005068,6.60e-07,56;UBERON:0006241,6.60e-07,56;UBERON:0007135,6.60e-07,56;UBERON:0003081,7.85e-07,203 | |||
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|short_description=p11@IPCEF1 | |||
}} |
Revision as of 18:52, 13 September 2013
Short description: | p11@IPCEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_IPCEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367220_5end |
EntrezGene: | IPCEF1 |
HGNC: | 21204 |
UniProt: | Q8WWN9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.00e-22 | 72 |
monopoietic cell | 1.40e-20 | 59 |
monocyte | 1.40e-20 | 59 |
monoblast | 1.40e-20 | 59 |
promonocyte | 1.40e-20 | 59 |
macrophage dendritic cell progenitor | 7.87e-20 | 61 |
classical monocyte | 2.30e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.30e-18 | 42 |
myeloid lineage restricted progenitor cell | 3.73e-18 | 66 |
granulocyte monocyte progenitor cell | 7.54e-18 | 67 |
defensive cell | 7.81e-16 | 48 |
phagocyte | 7.81e-16 | 48 |
myeloid cell | 9.69e-14 | 108 |
common myeloid progenitor | 9.69e-14 | 108 |
neutrophil | 5.06e-11 | 3 |
leukocyte | 2.63e-10 | 136 |
nongranular leukocyte | 2.22e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 6.95e-09 | 120 |
hematopoietic oligopotent progenitor cell | 3.02e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.02e-08 | 161 |
hematopoietic stem cell | 8.84e-08 | 168 |
intermediate monocyte | 1.78e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.78e-07 | 9 |
hematopoietic cell | 3.11e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.64e-17 | 98 |
blood island | 1.64e-17 | 98 |
hemolymphoid system | 1.32e-15 | 108 |
bone marrow | 1.87e-15 | 76 |
bone element | 3.78e-14 | 82 |
skeletal element | 1.13e-12 | 90 |
immune system | 3.47e-12 | 93 |
skeletal system | 3.69e-11 | 100 |
corpus callosum | 9.46e-09 | 1 |
central nervous system cell part cluster | 9.46e-09 | 1 |
axon tract | 9.46e-09 | 1 |
intercerebral commissure | 9.46e-09 | 1 |
dorsal telencephalic commissure | 9.46e-09 | 1 |
brain white matter | 9.46e-09 | 1 |
brain commissure | 9.46e-09 | 1 |
white matter | 9.46e-09 | 1 |
nervous system commissure | 9.46e-09 | 1 |
cerebral hemisphere white matter | 9.46e-09 | 1 |
substantia nigra | 2.46e-08 | 1 |
midbrain nucleus | 2.46e-08 | 1 |
regional part of midbrain | 2.46e-08 | 1 |
midbrain | 2.46e-08 | 1 |
presumptive midbrain | 2.46e-08 | 1 |
midbrain neural tube | 2.46e-08 | 1 |
neural tube | 6.60e-07 | 56 |
neural rod | 6.60e-07 | 56 |
future spinal cord | 6.60e-07 | 56 |
neural keel | 6.60e-07 | 56 |
lateral plate mesoderm | 7.85e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
syndrome | 5.59e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.