FFCP PHASE1:Mm9::chr2:179777448..179777496,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=269397|HGNC=|MCL_coexpression_id=22|UniProt=Q8BW22|association_with_transcript=234bp_to_ENSMUST00000041126_5end|description=CAGE_peak_1_at_Ss18l1_5end|id=chr2:179777448..179777496,+|ontology_enrichment_celltype=CL:0000117!2.33e-15!23;CL:0000337!2.33e-15!23;CL:0000540!2.44e-13!33;CL:0000047!2.44e-13!33;CL:0000031!2.44e-13!33;CL:0000404!2.44e-13!33;CL:0000393!2.50e-09!39;CL:0000211!2.50e-09!39;CL:0002319!6.07e-08!43;CL:0000221!7.20e-08!44;CL:0000133!7.20e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.13e-15,23;CL:0000337,2.13e-15,23;CL:0000540,2.27e-13,33;CL:0000047,2.27e-13,33;CL:0000031,2.27e-13,33;CL:0000404,2.27e-13,33;CL:0000393,2.38e-09,39;CL:0000211,2.38e-09,39;CL:0002319,6.15e-08,43;CL:0000221,7.31e-08,44;CL:0000133,7.31e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.05e-23!71;UBERON:0003075!2.05e-23!71;UBERON:0007284!2.05e-23!71;UBERON:0001017!4.68e-23!73;UBERON:0005743!4.68e-23!73;UBERON:0000033!1.79e-22!63;UBERON:0000073!8.11e-22!75;UBERON:0001016!8.11e-22!75;UBERON:0001049!9.45e-22!52;UBERON:0005068!9.45e-22!52;UBERON:0006241!9.45e-22!52;UBERON:0007135!9.45e-22!52;UBERON:0004121!1.38e-21!102;UBERON:0000924!1.38e-21!102;UBERON:0006601!1.38e-21!102;UBERON:0003056!5.85e-21!49;UBERON:0000955!5.21e-20!50;UBERON:0006238!5.21e-20!50;UBERON:0002616!1.96e-19!49;UBERON:0000153!1.23e-18!94;UBERON:0002020!5.54e-18!34;UBERON:0003080!6.35e-18!40;UBERON:0007811!2.44e-17!86;UBERON:0002780!2.51e-17!39;UBERON:0001890!2.51e-17!39;UBERON:0006240!2.51e-17!39;UBERON:0002791!1.07e-14!29;UBERON:0003528!1.07e-14!29;UBERON:0001893!1.07e-14!29;UBERON:0000956!5.34e-10!21;UBERON:0001869!5.34e-10!21;UBERON:0000203!5.34e-10!21;UBERON:0002619!1.19e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.18e-24,64;UBERON:0003075,2.18e-24,64;UBERON:0007284,2.18e-24,64;UBERON:0001017,4.42e-23,73;UBERON:0000073,7.49e-23,54;UBERON:0001016,7.70e-22,75;UBERON:0001049,9.09e-22,52;UBERON:0005068,9.09e-22,52;UBERON:0006241,9.09e-22,52;UBERON:0007135,9.09e-22,52;UBERON:0004121,9.96e-22,95;UBERON:0000924,9.96e-22,95;UBERON:0006601,9.96e-22,95;UBERON:0010371,2.82e-21,73;UBERON:0003056,5.17e-21,49;UBERON:0000955,1.94e-18,47;UBERON:0006238,1.94e-18,47;UBERON:0002020,5.00e-18,34;UBERON:0003080,5.73e-18,40;UBERON:0002616,7.15e-18,46;UBERON:0002780,2.27e-17,39;UBERON:0001890,2.27e-17,39;UBERON:0006240,2.27e-17,39;UBERON:0010314,7.60e-15,92;UBERON:0003528,9.82e-15,29;UBERON:0002791,9.82e-15,29;UBERON:0001893,9.82e-15,29;UBERON:0000956,5.06e-10,21;UBERON:0001869,5.06e-10,21;UBERON:0000203,5.06e-10,21;UBERON:0002619,1.14e-07,17|phase1_expression=5.2849119544582,0.348975407639361,0,0.30246421130683,1.00179145989269,1.34303417529512,1.16806320297763,1.42035655785734,4.22366166455,5.85161315804984,0.68487187290202,0.797721589953364,1.71200729931206,1.83582845079895,0.666219523631325,1.01237633694913,0.699561878128147,2.68142840554502,2.60517423850904,0.84877930359606,4.84746753861098,1.78723712161594,1.56719873483361,0.47997726838022,0.91763712426868,0,0,0.215471232685889,0.190023419456374,0.252030129759931,0.665191531965914,4.44521471421742,3.07532393792285,0,1.44425809875637,0.997407872150954,1.63335485009895,1.25559489221072,3.1253413780952,2.09409497589519,1.17646297606203,0.683045484958446,1.45653105909346,1.51076181570693,1.01376931219515,1.28482726513177,0.782391344348039,1.09012578190223,1.5378032791413,2.3331587888914,1.81982348112971,1.43752564364972,2.51673909086605,3.62681071005672,4.7053131879945,1.02903774414379,1.14613375975503,2.57836046138721,37.6308617198852,31.739458756322,30.4239073682966,1.0165335962074,1.77858959222228,0.449949858640699,0,2.8419204597844,2.69640099466564,1.15265491596466,20.5305432370786,29.8363123713036,22.5047708645979,19.9955689082663,19.6573001446936,23.6407242484861,22.8112221023403,20.2228133054205,5.50579404996943,16.4716666129892,17.050325191443,39.9615451822487,43.8225812855542,42.1939830150976,12.2840519560608,14.6318278608237,10.8486755921535,25.6326869362091,23.7760706934502,30.7559085611746,1.06016670666458,1.96486056277642,0.869593466105033,0.860423876981386,0.679971333707751,3.2382191498269,1.94932925234301,1.79210754838934,2.38755514223978,1.53387290320252,1.55871602761721,1.06001872353102,2.67602497575693,3.84979432242953,0,0,2.16491041011214,1.52015919285059,1.01104889002957,1.7127581957859,4.14300613835475,4.30482203287992,2.25530924795977,3.04465478312141,2.30615497256059,2.26083960828934,3.29248379979973,2.89033160058254,2.22475470960936,2.16899035379867,0.884610551949874,1.61766849947409,1.10420759230197,1.45462575940567,0,14.3462590535658,11.3101221679266,1.02182822083437,2.27648736561249,1.79970819298022,2.1601938602421,15.2786452192919,10.5225138648284,23.120400788767,14.4274185759589,8.18289463457058,15.9996794310861,11.5191296778108,1.62942982160506,4.85187185379363,17.4378703319236,5.89237196482127,3.90361328888111,4.59804208866946,5.58192602396583,5.57607825992146,6.87168641428411,5.8932311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| ||
|EntrezGene=269397 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q8BW22 | |||
|association_with_transcript=234bp_to_ENSMUST00000041126_5end | |||
|description=CAGE_peak_1_at_Ss18l1_5end | |||
|id=chr2:179777448..179777496,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.33e-15!23;CL:0000337!2.33e-15!23;CL:0000540!2.44e-13!33;CL:0000047!2.44e-13!33;CL:0000031!2.44e-13!33;CL:0000404!2.44e-13!33;CL:0000393!2.50e-09!39;CL:0000211!2.50e-09!39;CL:0002319!6.07e-08!43;CL:0000221!7.20e-08!44;CL:0000133!7.20e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.13e-15,23;CL:0000337,2.13e-15,23;CL:0000540,2.27e-13,33;CL:0000047,2.27e-13,33;CL:0000031,2.27e-13,33;CL:0000404,2.27e-13,33;CL:0000393,2.38e-09,39;CL:0000211,2.38e-09,39;CL:0002319,6.15e-08,43;CL:0000221,7.31e-08,44;CL:0000133,7.31e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.05e-23!71;UBERON:0003075!2.05e-23!71;UBERON:0007284!2.05e-23!71;UBERON:0001017!4.68e-23!73;UBERON:0005743!4.68e-23!73;UBERON:0000033!1.79e-22!63;UBERON:0000073!8.11e-22!75;UBERON:0001016!8.11e-22!75;UBERON:0001049!9.45e-22!52;UBERON:0005068!9.45e-22!52;UBERON:0006241!9.45e-22!52;UBERON:0007135!9.45e-22!52;UBERON:0004121!1.38e-21!102;UBERON:0000924!1.38e-21!102;UBERON:0006601!1.38e-21!102;UBERON:0003056!5.85e-21!49;UBERON:0000955!5.21e-20!50;UBERON:0006238!5.21e-20!50;UBERON:0002616!1.96e-19!49;UBERON:0000153!1.23e-18!94;UBERON:0002020!5.54e-18!34;UBERON:0003080!6.35e-18!40;UBERON:0007811!2.44e-17!86;UBERON:0002780!2.51e-17!39;UBERON:0001890!2.51e-17!39;UBERON:0006240!2.51e-17!39;UBERON:0002791!1.07e-14!29;UBERON:0003528!1.07e-14!29;UBERON:0001893!1.07e-14!29;UBERON:0000956!5.34e-10!21;UBERON:0001869!5.34e-10!21;UBERON:0000203!5.34e-10!21;UBERON:0002619!1.19e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.18e-24,64;UBERON:0003075,2.18e-24,64;UBERON:0007284,2.18e-24,64;UBERON:0001017,4.42e-23,73;UBERON:0000073,7.49e-23,54;UBERON:0001016,7.70e-22,75;UBERON:0001049,9.09e-22,52;UBERON:0005068,9.09e-22,52;UBERON:0006241,9.09e-22,52;UBERON:0007135,9.09e-22,52;UBERON:0004121,9.96e-22,95;UBERON:0000924,9.96e-22,95;UBERON:0006601,9.96e-22,95;UBERON:0010371,2.82e-21,73;UBERON:0003056,5.17e-21,49;UBERON:0000955,1.94e-18,47;UBERON:0006238,1.94e-18,47;UBERON:0002020,5.00e-18,34;UBERON:0003080,5.73e-18,40;UBERON:0002616,7.15e-18,46;UBERON:0002780,2.27e-17,39;UBERON:0001890,2.27e-17,39;UBERON:0006240,2.27e-17,39;UBERON:0010314,7.60e-15,92;UBERON:0003528,9.82e-15,29;UBERON:0002791,9.82e-15,29;UBERON:0001893,9.82e-15,29;UBERON:0000956,5.06e-10,21;UBERON:0001869,5.06e-10,21;UBERON:0000203,5.06e-10,21;UBERON:0002619,1.14e-07,17 | |||
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| |||
|short_description=p1@Ss18l1 | |||
}} |
Revision as of 23:11, 13 September 2013
Short description: | p1@Ss18l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ss18l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 234bp_to_ENSMUST00000041126_5end |
EntrezGene: | Ss18l1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.13e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.13e-15 | 23 |
neuron | 2.27e-13 | 33 |
neuronal stem cell | 2.27e-13 | 33 |
neuroblast | 2.27e-13 | 33 |
electrically signaling cell | 2.27e-13 | 33 |
electrically responsive cell | 2.38e-09 | 39 |
electrically active cell | 2.38e-09 | 39 |
neural cell | 6.15e-08 | 43 |
ectodermal cell | 7.31e-08 | 44 |
neurectodermal cell | 7.31e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.18e-24 | 64 |
neural plate | 2.18e-24 | 64 |
presumptive neural plate | 2.18e-24 | 64 |
central nervous system | 4.42e-23 | 73 |
regional part of nervous system | 7.49e-23 | 54 |
nervous system | 7.70e-22 | 75 |
neural tube | 9.09e-22 | 52 |
neural rod | 9.09e-22 | 52 |
future spinal cord | 9.09e-22 | 52 |
neural keel | 9.09e-22 | 52 |
ectoderm-derived structure | 9.96e-22 | 95 |
ectoderm | 9.96e-22 | 95 |
presumptive ectoderm | 9.96e-22 | 95 |
ecto-epithelium | 2.82e-21 | 73 |
pre-chordal neural plate | 5.17e-21 | 49 |
brain | 1.94e-18 | 47 |
future brain | 1.94e-18 | 47 |
gray matter | 5.00e-18 | 34 |
anterior neural tube | 5.73e-18 | 40 |
regional part of brain | 7.15e-18 | 46 |
regional part of forebrain | 2.27e-17 | 39 |
forebrain | 2.27e-17 | 39 |
future forebrain | 2.27e-17 | 39 |
structure with developmental contribution from neural crest | 7.60e-15 | 92 |
brain grey matter | 9.82e-15 | 29 |
regional part of telencephalon | 9.82e-15 | 29 |
telencephalon | 9.82e-15 | 29 |
cerebral cortex | 5.06e-10 | 21 |
cerebral hemisphere | 5.06e-10 | 21 |
pallium | 5.06e-10 | 21 |
regional part of cerebral cortex | 1.14e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.