FFCP PHASE1:Mm9::chr2:79296907..79296918,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=18012|HGNC=|MCL_coexpression_id=403|UniProt=Q60867|association_with_transcript=0bp_to_ENSMUST00000041099_5end|description=CAGE_peak_2_at_Neurod1_5end|id=chr2:79296907..79296918,-|ontology_enrichment_celltype=CL:0000117!3.55e-11!23;CL:0000337!3.55e-11!23;CL:0000540!6.02e-09!33;CL:0000047!6.02e-09!33;CL:0000031!6.02e-09!33;CL:0000404!6.02e-09!33|ontology_enrichment_celltype_v019_2=CL:0002609,1.20e-10,6;CL:0000117,1.33e-08,23;CL:0000337,1.33e-08,23;CL:0000120,2.11e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!2.61e-33!49;UBERON:0000033!2.20e-31!63;UBERON:0000955!1.30e-26!50;UBERON:0006238!1.30e-26!50;UBERON:0002346!3.61e-26!71;UBERON:0003075!3.61e-26!71;UBERON:0007284!3.61e-26!71;UBERON:0002616!3.71e-26!49;UBERON:0002780!4.60e-26!39;UBERON:0001890!4.60e-26!39;UBERON:0006240!4.60e-26!39;UBERON:0003080!4.94e-25!40;UBERON:0001049!2.02e-24!52;UBERON:0005068!2.02e-24!52;UBERON:0006241!2.02e-24!52;UBERON:0007135!2.02e-24!52;UBERON:0001017!5.28e-24!73;UBERON:0005743!5.28e-24!73;UBERON:0000073!7.99e-23!75;UBERON:0001016!7.99e-23!75;UBERON:0002791!3.32e-21!29;UBERON:0003528!3.32e-21!29;UBERON:0001893!3.32e-21!29;UBERON:0004121!5.03e-21!102;UBERON:0000924!5.03e-21!102;UBERON:0006601!5.03e-21!102;UBERON:0002020!4.82e-20!34;UBERON:0007811!1.45e-17!86;UBERON:0000956!1.34e-16!21;UBERON:0001869!1.34e-16!21;UBERON:0000203!1.34e-16!21;UBERON:0000153!1.87e-14!94;UBERON:0002619!6.19e-13!17;UBERON:0002021!6.15e-10!10;UBERON:0000411!6.15e-10!10;UBERON:0001950!6.15e-10!10;UBERON:0000970!7.18e-09!9;UBERON:0000019!7.18e-09!9;UBERON:0000047!7.18e-09!9;UBERON:0004088!7.18e-09!9;UBERON:0002104!7.18e-09!9;UBERON:0001456!7.18e-09!9;UBERON:0003072!7.18e-09!9;UBERON:0003071!7.18e-09!9;UBERON:0004128!7.18e-09!9|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.51e-37,49;UBERON:0002346,6.07e-32,64;UBERON:0003075,6.07e-32,64;UBERON:0007284,6.07e-32,64;UBERON:0000956,9.21e-32,21;UBERON:0001869,9.21e-32,21;UBERON:0000203,9.21e-32,21;UBERON:0003528,2.93e-27,29;UBERON:0002791,2.93e-27,29;UBERON:0001893,2.93e-27,29;UBERON:0010371,3.45e-27,73;UBERON:0002616,2.31e-26,46;UBERON:0002780,5.15e-26,39;UBERON:0001890,5.15e-26,39;UBERON:0006240,5.15e-26,39;UBERON:0000955,1.11e-25,47;UBERON:0006238,1.11e-25,47;UBERON:0003080,3.10e-25,40;UBERON:0004121,4.02e-24,95;UBERON:0000924,4.02e-24,95;UBERON:0006601,4.02e-24,95;UBERON:0002619,8.59e-23,17;UBERON:0001049,1.12e-22,52;UBERON:0005068,1.12e-22,52;UBERON:0006241,1.12e-22,52;UBERON:0007135,1.12e-22,52;UBERON:0002020,1.38e-22,34;UBERON:0000073,1.25e-21,54;UBERON:0010314,3.37e-20,92;UBERON:0002021,2.15e-19,10;UBERON:0000411,2.15e-19,10;UBERON:0001950,2.15e-19,10;UBERON:0001017,4.02e-19,73;UBERON:0001016,1.89e-18,75;UBERON:0000970,3.95e-13,9;UBERON:0000019,3.95e-13,9;UBERON:0000047,3.95e-13,9;UBERON:0010312,3.95e-13,9;UBERON:0004088,3.95e-13,9;UBERON:0002104,3.95e-13,9;UBERON:0001456,3.95e-13,9;UBERON:0003072,3.95e-13,9;UBERON:0004128,3.95e-13,9;UBERON:0003071,3.95e-13,9;UBERON:0001444,1.50e-10,11;UBERON:0000020,1.39e-09,12;UBERON:0001032,1.39e-09,12;UBERON:0004456,1.39e-09,12;UBERON:0000033,9.18e-09,13;UBERON:0005085,9.18e-09,13;UBERON:0000483,1.69e-07,174;UBERON:0000025,2.30e-07,114;UBERON:0000119,2.45e-07,176|phase1_expression=0,0,0,0,0,0.671517087647559,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0.45881856213434,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0.167782606057736,0,0.336093799142464,0,0,0,2.02316460859598,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0.384218305321555,5.28817022773236,2.97013064329719,2.94454945891935,0,0,1.83736198822431,0.670918297127655,2.75765635983006,0,0.383062014255563,0.46081959976873,0.923204014111357,0.731901148819277,1.04182674111352,1.11673199600552,0.56276261003168,0.15279824777681,0.294628585473668,0.142371680799103,0.372798891650601,0,0,0,0,0,0,0,0.448026887097336,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9812862266697,15.9179497178226,0,0,0,0,0,0.457500602818626,0.376963056338593,2.43354048269187,1.27857728665165,0.20778804455956,0.324482526135515,0,0,0,2.52530227063769,0.650602214813519,0.689706313300419,1.0803727788321,2.10986744970001,3.74200745332303,5.12454881139399,7.40243624021858,2.58703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,1.89260953707715,7.30622747892919,0.991256348951394,0,0,0,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0.238968797952552,0.445597348164788,0,0,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0.242780636154981,1.209294227859,0.377210159511796,0.590603785761546,0,0,1.81766864738753,0,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.129358683782755,1.07168517515796,1.24138163549592,1.78368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,3.22227665555024,3.43737308063638,4.1244763762485,7.53590771747707,3.0215755895588,4.05013500139084,2.70192721934532,0.453142408984205,1.03552062350364,0.726511433089237,0,0.341467211508268,0,0.419226325255965,0.183843508450014,0,0,0,0,0.25347929989024,0.188626341386076,0,0.320125762024346,0.516919220600519,0.952587382566147,0.347652977834566,0.38581844092741,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.581385666529314,0.470546902076653,0.0846146078916765,0,0,0.271608227691724,0,0.355905054372522,0.29551344712669,0.409231043169689,0.154936841185966,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0,0,0|short_description=p2@Neurod1}} | ||
|EntrezGene=18012 | |||
|HGNC= | |||
|MCL_coexpression_id=403 | |||
|UniProt=Q60867 | |||
|association_with_transcript=0bp_to_ENSMUST00000041099_5end | |||
|description=CAGE_peak_2_at_Neurod1_5end | |||
|id=chr2:79296907..79296918,- | |||
|ontology_enrichment_celltype=CL:0000117!3.55e-11!23;CL:0000337!3.55e-11!23;CL:0000540!6.02e-09!33;CL:0000047!6.02e-09!33;CL:0000031!6.02e-09!33;CL:0000404!6.02e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.20e-10,6;CL:0000117,1.33e-08,23;CL:0000337,1.33e-08,23;CL:0000120,2.11e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!2.61e-33!49;UBERON:0000033!2.20e-31!63;UBERON:0000955!1.30e-26!50;UBERON:0006238!1.30e-26!50;UBERON:0002346!3.61e-26!71;UBERON:0003075!3.61e-26!71;UBERON:0007284!3.61e-26!71;UBERON:0002616!3.71e-26!49;UBERON:0002780!4.60e-26!39;UBERON:0001890!4.60e-26!39;UBERON:0006240!4.60e-26!39;UBERON:0003080!4.94e-25!40;UBERON:0001049!2.02e-24!52;UBERON:0005068!2.02e-24!52;UBERON:0006241!2.02e-24!52;UBERON:0007135!2.02e-24!52;UBERON:0001017!5.28e-24!73;UBERON:0005743!5.28e-24!73;UBERON:0000073!7.99e-23!75;UBERON:0001016!7.99e-23!75;UBERON:0002791!3.32e-21!29;UBERON:0003528!3.32e-21!29;UBERON:0001893!3.32e-21!29;UBERON:0004121!5.03e-21!102;UBERON:0000924!5.03e-21!102;UBERON:0006601!5.03e-21!102;UBERON:0002020!4.82e-20!34;UBERON:0007811!1.45e-17!86;UBERON:0000956!1.34e-16!21;UBERON:0001869!1.34e-16!21;UBERON:0000203!1.34e-16!21;UBERON:0000153!1.87e-14!94;UBERON:0002619!6.19e-13!17;UBERON:0002021!6.15e-10!10;UBERON:0000411!6.15e-10!10;UBERON:0001950!6.15e-10!10;UBERON:0000970!7.18e-09!9;UBERON:0000019!7.18e-09!9;UBERON:0000047!7.18e-09!9;UBERON:0004088!7.18e-09!9;UBERON:0002104!7.18e-09!9;UBERON:0001456!7.18e-09!9;UBERON:0003072!7.18e-09!9;UBERON:0003071!7.18e-09!9;UBERON:0004128!7.18e-09!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.51e-37,49;UBERON:0002346,6.07e-32,64;UBERON:0003075,6.07e-32,64;UBERON:0007284,6.07e-32,64;UBERON:0000956,9.21e-32,21;UBERON:0001869,9.21e-32,21;UBERON:0000203,9.21e-32,21;UBERON:0003528,2.93e-27,29;UBERON:0002791,2.93e-27,29;UBERON:0001893,2.93e-27,29;UBERON:0010371,3.45e-27,73;UBERON:0002616,2.31e-26,46;UBERON:0002780,5.15e-26,39;UBERON:0001890,5.15e-26,39;UBERON:0006240,5.15e-26,39;UBERON:0000955,1.11e-25,47;UBERON:0006238,1.11e-25,47;UBERON:0003080,3.10e-25,40;UBERON:0004121,4.02e-24,95;UBERON:0000924,4.02e-24,95;UBERON:0006601,4.02e-24,95;UBERON:0002619,8.59e-23,17;UBERON:0001049,1.12e-22,52;UBERON:0005068,1.12e-22,52;UBERON:0006241,1.12e-22,52;UBERON:0007135,1.12e-22,52;UBERON:0002020,1.38e-22,34;UBERON:0000073,1.25e-21,54;UBERON:0010314,3.37e-20,92;UBERON:0002021,2.15e-19,10;UBERON:0000411,2.15e-19,10;UBERON:0001950,2.15e-19,10;UBERON:0001017,4.02e-19,73;UBERON:0001016,1.89e-18,75;UBERON:0000970,3.95e-13,9;UBERON:0000019,3.95e-13,9;UBERON:0000047,3.95e-13,9;UBERON:0010312,3.95e-13,9;UBERON:0004088,3.95e-13,9;UBERON:0002104,3.95e-13,9;UBERON:0001456,3.95e-13,9;UBERON:0003072,3.95e-13,9;UBERON:0004128,3.95e-13,9;UBERON:0003071,3.95e-13,9;UBERON:0001444,1.50e-10,11;UBERON:0000020,1.39e-09,12;UBERON:0001032,1.39e-09,12;UBERON:0004456,1.39e-09,12;UBERON:0000033,9.18e-09,13;UBERON:0005085,9.18e-09,13;UBERON:0000483,1.69e-07,174;UBERON:0000025,2.30e-07,114;UBERON:0000119,2.45e-07,176 | |||
|phase1_expression=0,0,0,0,0,0.671517087647559,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0.45881856213434,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0.167782606057736,0,0.336093799142464,0,0,0,2.02316460859598,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0.384218305321555,5.28817022773236,2.97013064329719,2.94454945891935,0,0,1.83736198822431,0.670918297127655,2.75765635983006,0,0.383062014255563,0.46081959976873,0.923204014111357,0.731901148819277,1.04182674111352,1.11673199600552,0.56276261003168,0.15279824777681,0.294628585473668,0.142371680799103,0.372798891650601,0,0,0,0,0,0,0,0.448026887097336,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9812862266697,15.9179497178226,0,0,0,0,0,0.457500602818626,0.376963056338593,2.43354048269187,1.27857728665165,0.20778804455956,0.324482526135515,0,0,0,2.52530227063769,0.650602214813519,0.689706313300419,1.0803727788321,2.10986744970001,3.74200745332303,5.12454881139399,7.40243624021858,2.58703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,1.89260953707715,7.30622747892919,0.991256348951394,0,0,0,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0.238968797952552,0.445597348164788,0,0,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0.242780636154981,1.209294227859,0.377210159511796,0.590603785761546,0,0,1.81766864738753,0,0.316036757935816,0,0,0.680879211507576,0.36012218806262,0.129358683782755,1.07168517515796,1.24138163549592,1.78368817602071,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,3.22227665555024,3.43737308063638,4.1244763762485,7.53590771747707,3.0215755895588,4.05013500139084,2.70192721934532,0.453142408984205,1.03552062350364,0.726511433089237,0,0.341467211508268,0,0.419226325255965,0.183843508450014,0,0,0,0,0.25347929989024,0.188626341386076,0,0.320125762024346,0.516919220600519,0.952587382566147,0.347652977834566,0.38581844092741,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.581385666529314,0.470546902076653,0.0846146078916765,0,0,0.271608227691724,0,0.355905054372522,0.29551344712669,0.409231043169689,0.154936841185966,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p2@Neurod1 | |||
}} |
Revision as of 00:43, 14 September 2013
Short description: | p2@Neurod1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Neurod1_5end |
Coexpression cluster: | MCL_coexpression_mm9:403 |
Association with transcript: | 0bp_to_ENSMUST00000041099_5end |
EntrezGene: | Neurod1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.20e-10 | 6 |
CNS neuron (sensu Vertebrata) | 1.33e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.33e-08 | 23 |
granule cell | 2.11e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.