FFCP PHASE1:Mm9::chr5:115940240..115940260,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=370|UniProt=|association_with_transcript=-2bp_to_ENSMUST00000101833_5end|description=CAGE_peak_1_at_ENSMUST00000101833_5end|id=chr5:115940240..115940260,+|ontology_enrichment_celltype=CL:0000548!3.94e-42!115;CL:0000004!3.94e-42!115;CL:0000255!3.94e-42!115;CL:0002371!3.90e-41!118;CL:0000144!4.14e-41!121;CL:0000012!4.14e-41!121;CL:0000034!3.93e-35!97;CL:0000723!1.22e-33!91;CL:0000048!1.22e-33!91;CL:0002321!2.77e-28!70;CL:0000220!2.77e-28!70;CL:0002319!9.41e-26!43;CL:0000055!9.87e-26!50;CL:0000221!1.27e-25!44;CL:0000133!1.27e-25!44;CL:0000540!2.35e-21!33;CL:0000047!2.35e-21!33;CL:0000031!2.35e-21!33;CL:0000404!2.35e-21!33;CL:0000393!9.29e-21!39;CL:0000211!9.29e-21!39;CL:0000117!9.60e-16!23;CL:0000337!9.60e-16!23;CL:0000219!3.53e-15!54;CL:0000063!1.75e-13!66;CL:0002320!6.30e-12!46;CL:0000134!6.30e-12!46;CL:0000763!6.95e-09!16;CL:0000049!2.22e-08!19;CL:0000839!2.46e-08!13;CL:0000988!5.57e-07!32;CL:0002032!5.57e-07!32;CL:0000037!5.57e-07!32;CL:0000566!5.57e-07!32;CL:0000837!5.57e-07!32;CL:0002031!7.40e-07!25;CL:0000107!7.96e-07!9|ontology_enrichment_celltype_v019_2=CL:0002319,3.72e-40,43;CL:0000221,6.00e-39,44;CL:0000133,6.00e-39,44;CL:0002321,1.25e-33,70;CL:0000540,2.40e-33,33;CL:0000047,2.40e-33,33;CL:0000031,2.40e-33,33;CL:0000404,2.40e-33,33;CL:0000393,1.42e-32,39;CL:0000211,1.42e-32,39;CL:0000034,2.19e-30,97;CL:0000723,1.36e-29,91;CL:0000048,1.36e-29,91;CL:0000117,3.92e-25,23;CL:0000337,3.92e-25,23;CL:0000107,2.57e-10,9;CL:0002453,8.18e-10,8;CL:0000128,2.43e-08,6;CL:0000126,2.43e-08,6;CL:0000127,2.43e-08,6;CL:0000219,2.93e-08,54;CL:0002609,3.35e-08,6;CL:0000333,1.77e-07,10;CL:0000095,1.77e-07,10;CL:0000243,1.77e-07,10;CL:0000123,1.77e-07,10;CL:0000125,1.77e-07,10;CL:0000030,1.77e-07,10;CL:0000339,1.77e-07,10;CL:0000839,2.92e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.56e-19!73;UBERON:0005743!1.56e-19!73;UBERON:0000073!5.11e-19!75;UBERON:0001016!5.11e-19!75;UBERON:0002020!1.08e-14!34;UBERON:0002384!6.30e-12!46;UBERON:0002791!6.37e-12!29;UBERON:0003528!6.37e-12!29;UBERON:0001893!6.37e-12!29;UBERON:0004121!3.18e-10!102;UBERON:0000924!3.18e-10!102;UBERON:0006601!3.18e-10!102;UBERON:0001049!2.56e-09!52;UBERON:0005068!2.56e-09!52;UBERON:0006241!2.56e-09!52;UBERON:0007135!2.56e-09!52;UBERON:0002616!8.52e-09!49;UBERON:0000956!9.06e-09!21;UBERON:0001869!9.06e-09!21;UBERON:0000203!9.06e-09!21;UBERON:0002780!1.23e-08!39;UBERON:0001890!1.23e-08!39;UBERON:0006240!1.23e-08!39;UBERON:0000955!2.29e-08!50;UBERON:0006238!2.29e-08!50;UBERON:0002371!3.38e-08!16;UBERON:0003080!3.80e-08!40;UBERON:0002619!8.88e-08!17;UBERON:0002410!7.96e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.92e-32,73;UBERON:0001016,7.07e-31,75;UBERON:0002020,8.86e-24,34;UBERON:0004121,2.89e-22,95;UBERON:0000924,2.89e-22,95;UBERON:0006601,2.89e-22,95;UBERON:0003528,3.79e-19,29;UBERON:0002791,3.79e-19,29;UBERON:0001893,3.79e-19,29;UBERON:0000073,4.42e-18,54;UBERON:0001049,2.80e-15,52;UBERON:0005068,2.80e-15,52;UBERON:0006241,2.80e-15,52;UBERON:0007135,2.80e-15,52;UBERON:0000956,8.47e-15,21;UBERON:0001869,8.47e-15,21;UBERON:0000203,8.47e-15,21;UBERON:0002346,1.39e-14,64;UBERON:0003075,1.39e-14,64;UBERON:0007284,1.39e-14,64;UBERON:0002619,9.40e-13,17;UBERON:0002780,2.21e-12,39;UBERON:0001890,2.21e-12,39;UBERON:0006240,2.21e-12,39;UBERON:0002616,5.63e-12,46;UBERON:0003080,6.74e-12,40;UBERON:0000955,1.47e-11,47;UBERON:0006238,1.47e-11,47;UBERON:0010371,1.47e-11,73;UBERON:0002410,2.57e-10,9;UBERON:0002021,1.42e-09,10;UBERON:0000411,1.42e-09,10;UBERON:0001950,1.42e-09,10;UBERON:0010314,2.41e-09,92;UBERON:0003056,2.84e-09,49;UBERON:0000010,4.77e-08,11|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,0.500895729946347,0,0.467225281191051,0.129123323441576,0.422366166455,0.70219357896598,0.34243593645101,0.0797721589953364,0.171200729931206,0,3.99731714178795,0.607425802169478,6.29605690315332,0.788655413395594,0.548457734422955,0.42438965179803,0,0.0992909512008853,0.522399578277871,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0,0.380046838912748,0,0.665191531965914,29.8464416526027,17.221814052368,15.8481681015439,0.577703239502549,0.332469290716985,1.02084678131185,0,0,0.523523743973798,0,0.683045484958446,0,0,0.101376931219515,0,10.9534788208725,7.84890562969608,3.73466510648602,4.6663175777828,5.87942970826523,10.062679505548,0,0,0.336093799142464,1.80081605225163,6.5902691185914,3.09403255366465,3.03474691289397,17.4567023159771,12.6766280701236,2.71075625655306,7.11435836888911,1.7997994345628,4.94433181283487,5.6838409195688,3.89480143673926,1.92109152660777,1.8664130215526,9.31540974488665,7.78202357000113,5.42736870367227,2.87129103237098,5.02212276781312,6.51749202924007,19.3035945188104,4.40463523997555,3.06449611404451,2.4577045320999,11.3422207447967,8.5083508550241,7.29278718779464,4.4669279840221,1.12552522006336,4.88954392885792,3.83017161115768,2.84743361598206,3.91438836233131,0,0.151143120213571,0.869593466105033,0.860423876981386,2.719885334831,2.69851595818909,1.29955283489534,2.24013443548668,0,0,0.779358013808606,1.06001872353102,0.14084341977668,0,0,0,3.24736561516821,0.760079596425296,3.53867111510348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0.502617408451458,0,0,0,0,0,0.124406970610093,0,0,0.130120442962704,1.14951052216736,0,0.150704817835715,0,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0.702213187313235,0.257347907114715,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0.164167464079095,0.0810688095458557,0,0,0,0,0,0,0.264450566663544,0,0.464473343720877,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0.221464689648775,0,0,0,0,9.04747703635634,5.4390568381871,0,0,0,0,0,0,1.57754109708128,2.34263246577983,7.53981892064796,4.54040716109849,8.02075226696619,9.90767857760913,4.85772842009873,3.79932615284705,4.34816555741176,0,0,0,0.162886959353576,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.178368817602071,0.164549020602121,0.304464949114599,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.339956859987711,0.279902904647316,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0.198681354781265,0,0.147689527174577,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,2.66383144048878,1.16628013592318,1.67884616364078,0,0,0.183151624267265,0,0,3.95326289831947,2.30162618253588,1.71868654031819,3.78077001156113,4.11049511862385,2.2661816921691,4.05013500139084,3.60256962579376,4.07828168085784,2.07104124700728,0.207574695168353,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0.412085900803307,0,0,0,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p1@ENSMUST00000101833}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=370 | |||
|UniProt= | |||
|association_with_transcript=-2bp_to_ENSMUST00000101833_5end | |||
|description=CAGE_peak_1_at_ENSMUST00000101833_5end | |||
|id=chr5:115940240..115940260,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.94e-42!115;CL:0000004!3.94e-42!115;CL:0000255!3.94e-42!115;CL:0002371!3.90e-41!118;CL:0000144!4.14e-41!121;CL:0000012!4.14e-41!121;CL:0000034!3.93e-35!97;CL:0000723!1.22e-33!91;CL:0000048!1.22e-33!91;CL:0002321!2.77e-28!70;CL:0000220!2.77e-28!70;CL:0002319!9.41e-26!43;CL:0000055!9.87e-26!50;CL:0000221!1.27e-25!44;CL:0000133!1.27e-25!44;CL:0000540!2.35e-21!33;CL:0000047!2.35e-21!33;CL:0000031!2.35e-21!33;CL:0000404!2.35e-21!33;CL:0000393!9.29e-21!39;CL:0000211!9.29e-21!39;CL:0000117!9.60e-16!23;CL:0000337!9.60e-16!23;CL:0000219!3.53e-15!54;CL:0000063!1.75e-13!66;CL:0002320!6.30e-12!46;CL:0000134!6.30e-12!46;CL:0000763!6.95e-09!16;CL:0000049!2.22e-08!19;CL:0000839!2.46e-08!13;CL:0000988!5.57e-07!32;CL:0002032!5.57e-07!32;CL:0000037!5.57e-07!32;CL:0000566!5.57e-07!32;CL:0000837!5.57e-07!32;CL:0002031!7.40e-07!25;CL:0000107!7.96e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.72e-40,43;CL:0000221,6.00e-39,44;CL:0000133,6.00e-39,44;CL:0002321,1.25e-33,70;CL:0000540,2.40e-33,33;CL:0000047,2.40e-33,33;CL:0000031,2.40e-33,33;CL:0000404,2.40e-33,33;CL:0000393,1.42e-32,39;CL:0000211,1.42e-32,39;CL:0000034,2.19e-30,97;CL:0000723,1.36e-29,91;CL:0000048,1.36e-29,91;CL:0000117,3.92e-25,23;CL:0000337,3.92e-25,23;CL:0000107,2.57e-10,9;CL:0002453,8.18e-10,8;CL:0000128,2.43e-08,6;CL:0000126,2.43e-08,6;CL:0000127,2.43e-08,6;CL:0000219,2.93e-08,54;CL:0002609,3.35e-08,6;CL:0000333,1.77e-07,10;CL:0000095,1.77e-07,10;CL:0000243,1.77e-07,10;CL:0000123,1.77e-07,10;CL:0000125,1.77e-07,10;CL:0000030,1.77e-07,10;CL:0000339,1.77e-07,10;CL:0000839,2.92e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.56e-19!73;UBERON:0005743!1.56e-19!73;UBERON:0000073!5.11e-19!75;UBERON:0001016!5.11e-19!75;UBERON:0002020!1.08e-14!34;UBERON:0002384!6.30e-12!46;UBERON:0002791!6.37e-12!29;UBERON:0003528!6.37e-12!29;UBERON:0001893!6.37e-12!29;UBERON:0004121!3.18e-10!102;UBERON:0000924!3.18e-10!102;UBERON:0006601!3.18e-10!102;UBERON:0001049!2.56e-09!52;UBERON:0005068!2.56e-09!52;UBERON:0006241!2.56e-09!52;UBERON:0007135!2.56e-09!52;UBERON:0002616!8.52e-09!49;UBERON:0000956!9.06e-09!21;UBERON:0001869!9.06e-09!21;UBERON:0000203!9.06e-09!21;UBERON:0002780!1.23e-08!39;UBERON:0001890!1.23e-08!39;UBERON:0006240!1.23e-08!39;UBERON:0000955!2.29e-08!50;UBERON:0006238!2.29e-08!50;UBERON:0002371!3.38e-08!16;UBERON:0003080!3.80e-08!40;UBERON:0002619!8.88e-08!17;UBERON:0002410!7.96e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.92e-32,73;UBERON:0001016,7.07e-31,75;UBERON:0002020,8.86e-24,34;UBERON:0004121,2.89e-22,95;UBERON:0000924,2.89e-22,95;UBERON:0006601,2.89e-22,95;UBERON:0003528,3.79e-19,29;UBERON:0002791,3.79e-19,29;UBERON:0001893,3.79e-19,29;UBERON:0000073,4.42e-18,54;UBERON:0001049,2.80e-15,52;UBERON:0005068,2.80e-15,52;UBERON:0006241,2.80e-15,52;UBERON:0007135,2.80e-15,52;UBERON:0000956,8.47e-15,21;UBERON:0001869,8.47e-15,21;UBERON:0000203,8.47e-15,21;UBERON:0002346,1.39e-14,64;UBERON:0003075,1.39e-14,64;UBERON:0007284,1.39e-14,64;UBERON:0002619,9.40e-13,17;UBERON:0002780,2.21e-12,39;UBERON:0001890,2.21e-12,39;UBERON:0006240,2.21e-12,39;UBERON:0002616,5.63e-12,46;UBERON:0003080,6.74e-12,40;UBERON:0000955,1.47e-11,47;UBERON:0006238,1.47e-11,47;UBERON:0010371,1.47e-11,73;UBERON:0002410,2.57e-10,9;UBERON:0002021,1.42e-09,10;UBERON:0000411,1.42e-09,10;UBERON:0001950,1.42e-09,10;UBERON:0010314,2.41e-09,92;UBERON:0003056,2.84e-09,49;UBERON:0000010,4.77e-08,11 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,0.500895729946347,0,0.467225281191051,0.129123323441576,0.422366166455,0.70219357896598,0.34243593645101,0.0797721589953364,0.171200729931206,0,3.99731714178795,0.607425802169478,6.29605690315332,0.788655413395594,0.548457734422955,0.42438965179803,0,0.0992909512008853,0.522399578277871,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0,0.380046838912748,0,0.665191531965914,29.8464416526027,17.221814052368,15.8481681015439,0.577703239502549,0.332469290716985,1.02084678131185,0,0,0.523523743973798,0,0.683045484958446,0,0,0.101376931219515,0,10.9534788208725,7.84890562969608,3.73466510648602,4.6663175777828,5.87942970826523,10.062679505548,0,0,0.336093799142464,1.80081605225163,6.5902691185914,3.09403255366465,3.03474691289397,17.4567023159771,12.6766280701236,2.71075625655306,7.11435836888911,1.7997994345628,4.94433181283487,5.6838409195688,3.89480143673926,1.92109152660777,1.8664130215526,9.31540974488665,7.78202357000113,5.42736870367227,2.87129103237098,5.02212276781312,6.51749202924007,19.3035945188104,4.40463523997555,3.06449611404451,2.4577045320999,11.3422207447967,8.5083508550241,7.29278718779464,4.4669279840221,1.12552522006336,4.88954392885792,3.83017161115768,2.84743361598206,3.91438836233131,0,0.151143120213571,0.869593466105033,0.860423876981386,2.719885334831,2.69851595818909,1.29955283489534,2.24013443548668,0,0,0.779358013808606,1.06001872353102,0.14084341977668,0,0,0,3.24736561516821,0.760079596425296,3.53867111510348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0.502617408451458,0,0,0,0,0,0.124406970610093,0,0,0.130120442962704,1.14951052216736,0,0.150704817835715,0,0,0,0,0,0,0,0.219195732427575,0,0,0,0,0.702213187313235,0.257347907114715,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0.164167464079095,0.0810688095458557,0,0,0,0,0,0,0.264450566663544,0,0.464473343720877,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0.221464689648775,0,0,0,0,9.04747703635634,5.4390568381871,0,0,0,0,0,0,1.57754109708128,2.34263246577983,7.53981892064796,4.54040716109849,8.02075226696619,9.90767857760913,4.85772842009873,3.79932615284705,4.34816555741176,0,0,0,0.162886959353576,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.178368817602071,0.164549020602121,0.304464949114599,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.339956859987711,0.279902904647316,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0.198681354781265,0,0.147689527174577,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,2.66383144048878,1.16628013592318,1.67884616364078,0,0,0.183151624267265,0,0,3.95326289831947,2.30162618253588,1.71868654031819,3.78077001156113,4.11049511862385,2.2661816921691,4.05013500139084,3.60256962579376,4.07828168085784,2.07104124700728,0.207574695168353,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0.412085900803307,0,0,0,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p1@ENSMUST00000101833 | |||
}} |
Revision as of 06:07, 14 September 2013
Short description: | p1@ENSMUST00000101833 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000101833_5end |
Coexpression cluster: | MCL_coexpression_mm9:370 |
Association with transcript: | -2bp_to_ENSMUST00000101833_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.72e-40 | 43 |
ectodermal cell | 6.00e-39 | 44 |
neurectodermal cell | 6.00e-39 | 44 |
embryonic cell | 1.25e-33 | 70 |
neuron | 2.40e-33 | 33 |
neuronal stem cell | 2.40e-33 | 33 |
neuroblast | 2.40e-33 | 33 |
electrically signaling cell | 2.40e-33 | 33 |
electrically responsive cell | 1.42e-32 | 39 |
electrically active cell | 1.42e-32 | 39 |
stem cell | 2.19e-30 | 97 |
somatic stem cell | 1.36e-29 | 91 |
multi fate stem cell | 1.36e-29 | 91 |
CNS neuron (sensu Vertebrata) | 3.92e-25 | 23 |
neuroblast (sensu Vertebrata) | 3.92e-25 | 23 |
autonomic neuron | 2.57e-10 | 9 |
oligodendrocyte precursor cell | 8.18e-10 | 8 |
oligodendrocyte | 2.43e-08 | 6 |
macroglial cell | 2.43e-08 | 6 |
astrocyte | 2.43e-08 | 6 |
motile cell | 2.93e-08 | 54 |
neuron of cerebral cortex | 3.35e-08 | 6 |
migratory neural crest cell | 1.77e-07 | 10 |
neuron associated cell | 1.77e-07 | 10 |
glial cell (sensu Vertebrata) | 1.77e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.77e-07 | 10 |
glial cell | 1.77e-07 | 10 |
glioblast | 1.77e-07 | 10 |
glioblast (sensu Vertebrata) | 1.77e-07 | 10 |
myeloid lineage restricted progenitor cell | 2.92e-07 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.