FFCP PHASE1:Mm9::chr5:121459642..121459653,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19894|HGNC=|MCL_coexpression_id=121|UniProt=P47708|association_with_transcript=-115bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end|description=CAGE_peak_8_at_Rph3a_5end|id=chr5:121459642..121459653,-|ontology_enrichment_celltype=CL:0000117!2.16e-15!23;CL:0000337!2.16e-15!23;CL:0000540!1.02e-10!33;CL:0000047!1.02e-10!33;CL:0000031!1.02e-10!33;CL:0000404!1.02e-10!33;CL:0000393!2.11e-08!39;CL:0000211!2.11e-08!39;CL:0002319!3.88e-08!43;CL:0000221!7.48e-08!44;CL:0000133!7.48e-08!44|ontology_enrichment_celltype_v019_2=CL:0002610,6.61e-14,3;CL:0002614,5.62e-13,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!7.04e-31!52;UBERON:0005068!7.04e-31!52;UBERON:0006241!7.04e-31!52;UBERON:0007135!7.04e-31!52;UBERON:0000073!6.17e-28!75;UBERON:0001016!6.17e-28!75;UBERON:0002346!1.58e-27!71;UBERON:0003075!1.58e-27!71;UBERON:0007284!1.58e-27!71;UBERON:0001017!1.70e-27!73;UBERON:0005743!1.70e-27!73;UBERON:0002616!2.06e-27!49;UBERON:0000033!4.47e-27!63;UBERON:0000955!1.10e-26!50;UBERON:0006238!1.10e-26!50;UBERON:0004121!8.50e-24!102;UBERON:0000924!8.50e-24!102;UBERON:0006601!8.50e-24!102;UBERON:0002020!9.12e-23!34;UBERON:0003056!1.14e-19!49;UBERON:0003080!1.62e-18!40;UBERON:0007811!3.36e-17!86;UBERON:0002780!3.73e-17!39;UBERON:0001890!3.73e-17!39;UBERON:0006240!3.73e-17!39;UBERON:0002791!1.68e-16!29;UBERON:0003528!1.68e-16!29;UBERON:0001893!1.68e-16!29;UBERON:0000153!6.50e-15!94;UBERON:0003076!1.12e-13!12;UBERON:0003057!1.12e-13!12;UBERON:0002298!1.89e-11!6;UBERON:0000956!9.07e-11!21;UBERON:0001869!9.07e-11!21;UBERON:0000203!9.07e-11!21;UBERON:0002021!1.60e-10!10;UBERON:0000411!1.60e-10!10;UBERON:0001950!1.60e-10!10;UBERON:0002619!6.70e-10!17;UBERON:0002240!7.10e-10!6;UBERON:0005174!7.10e-10!6;UBERON:0001137!7.10e-10!6;UBERON:0000025!4.52e-09!114;UBERON:0004111!1.36e-08!122;UBERON:0001948!3.01e-08!5;UBERON:0002315!3.01e-08!5;UBERON:0002950!5.75e-08!4;UBERON:0001891!5.75e-08!4;UBERON:0009616!5.75e-08!4;UBERON:0002420!3.79e-07!8;UBERON:0007245!3.79e-07!8;UBERON:0010009!3.79e-07!8;UBERON:0010011!3.79e-07!8;UBERON:0000454!3.79e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.67e-29,54;UBERON:0002616,6.00e-24,46;UBERON:0001049,1.15e-23,52;UBERON:0005068,1.15e-23,52;UBERON:0006241,1.15e-23,52;UBERON:0007135,1.15e-23,52;UBERON:0000955,2.21e-23,47;UBERON:0006238,2.21e-23,47;UBERON:0001017,6.62e-23,73;UBERON:0001016,3.24e-22,75;UBERON:0002346,1.06e-18,64;UBERON:0003075,1.06e-18,64;UBERON:0007284,1.06e-18,64;UBERON:0002950,4.17e-17,4;UBERON:0001891,4.17e-17,4;UBERON:0009616,4.17e-17,4;UBERON:0010286,4.17e-17,4;UBERON:0004121,6.58e-17,95;UBERON:0000924,6.58e-17,95;UBERON:0006601,6.58e-17,95;UBERON:0010371,4.86e-16,73;UBERON:0003080,2.63e-15,40;UBERON:0002021,2.46e-14,10;UBERON:0000411,2.46e-14,10;UBERON:0001950,2.46e-14,10;UBERON:0004684,6.61e-14,3;UBERON:0002275,6.61e-14,3;UBERON:0002780,3.37e-13,39;UBERON:0001890,3.37e-13,39;UBERON:0006240,3.37e-13,39;UBERON:0002038,5.62e-13,3;UBERON:0009663,5.62e-13,3;UBERON:0009661,5.62e-13,3;UBERON:0000125,5.62e-13,3;UBERON:0002308,5.62e-13,3;UBERON:0003528,1.36e-12,29;UBERON:0002791,1.36e-12,29;UBERON:0001893,1.36e-12,29;UBERON:0004733,1.43e-12,6;UBERON:0004732,1.43e-12,6;UBERON:0002028,1.43e-12,6;UBERON:0007277,1.43e-12,6;UBERON:0010314,4.02e-12,92;UBERON:0003056,4.21e-12,49;UBERON:0002020,1.60e-10,34;UBERON:0001896,4.07e-10,2;UBERON:0002298,4.07e-10,2;UBERON:0005290,4.07e-10,2;UBERON:0010096,4.07e-10,2;UBERON:0003076,2.31e-09,12;UBERON:0003057,2.31e-09,12;UBERON:0000025,3.33e-09,114;UBERON:0000956,8.61e-09,21;UBERON:0001869,8.61e-09,21;UBERON:0000203,8.61e-09,21;UBERON:0004111,2.12e-08,122;UBERON:0002619,3.01e-08,17|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,0.571301968807607,0.441737081903227,0,0.0958454710182364,0,2.20231761998777,3.31987079021488,2.61131106535614,0.263772575460388,0.640413505216868,0,2.51264699101243,1.12552522006336,1.68078072554491,0.883885756421003,0.569486723196412,0.559198337475902,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,8.78342391034641,7.33063473847093,0,0,0,0,2.84602214869163,0,0.125654352112864,1.21677024134594,0.767146371990992,2.28566849015516,1.29793010454206,0,0,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0.0937017245597288,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,3.04750385139728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0,1.71868654031819,1.20297227640581,1.37016503954128,0,2.02506750069542,0.900642406448441,1.35942722695261,0.51776031175182,0,0,0,0,0,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0,0.188626341386076,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0.214871054048298,0,0,0|short_description=p8@Rph3a}} | ||
|EntrezGene=19894 | |||
|HGNC= | |||
|MCL_coexpression_id=121 | |||
|UniProt=P47708 | |||
|association_with_transcript=-115bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end | |||
|description=CAGE_peak_8_at_Rph3a_5end | |||
|id=chr5:121459642..121459653,- | |||
|ontology_enrichment_celltype=CL:0000117!2.16e-15!23;CL:0000337!2.16e-15!23;CL:0000540!1.02e-10!33;CL:0000047!1.02e-10!33;CL:0000031!1.02e-10!33;CL:0000404!1.02e-10!33;CL:0000393!2.11e-08!39;CL:0000211!2.11e-08!39;CL:0002319!3.88e-08!43;CL:0000221!7.48e-08!44;CL:0000133!7.48e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,6.61e-14,3;CL:0002614,5.62e-13,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.04e-31!52;UBERON:0005068!7.04e-31!52;UBERON:0006241!7.04e-31!52;UBERON:0007135!7.04e-31!52;UBERON:0000073!6.17e-28!75;UBERON:0001016!6.17e-28!75;UBERON:0002346!1.58e-27!71;UBERON:0003075!1.58e-27!71;UBERON:0007284!1.58e-27!71;UBERON:0001017!1.70e-27!73;UBERON:0005743!1.70e-27!73;UBERON:0002616!2.06e-27!49;UBERON:0000033!4.47e-27!63;UBERON:0000955!1.10e-26!50;UBERON:0006238!1.10e-26!50;UBERON:0004121!8.50e-24!102;UBERON:0000924!8.50e-24!102;UBERON:0006601!8.50e-24!102;UBERON:0002020!9.12e-23!34;UBERON:0003056!1.14e-19!49;UBERON:0003080!1.62e-18!40;UBERON:0007811!3.36e-17!86;UBERON:0002780!3.73e-17!39;UBERON:0001890!3.73e-17!39;UBERON:0006240!3.73e-17!39;UBERON:0002791!1.68e-16!29;UBERON:0003528!1.68e-16!29;UBERON:0001893!1.68e-16!29;UBERON:0000153!6.50e-15!94;UBERON:0003076!1.12e-13!12;UBERON:0003057!1.12e-13!12;UBERON:0002298!1.89e-11!6;UBERON:0000956!9.07e-11!21;UBERON:0001869!9.07e-11!21;UBERON:0000203!9.07e-11!21;UBERON:0002021!1.60e-10!10;UBERON:0000411!1.60e-10!10;UBERON:0001950!1.60e-10!10;UBERON:0002619!6.70e-10!17;UBERON:0002240!7.10e-10!6;UBERON:0005174!7.10e-10!6;UBERON:0001137!7.10e-10!6;UBERON:0000025!4.52e-09!114;UBERON:0004111!1.36e-08!122;UBERON:0001948!3.01e-08!5;UBERON:0002315!3.01e-08!5;UBERON:0002950!5.75e-08!4;UBERON:0001891!5.75e-08!4;UBERON:0009616!5.75e-08!4;UBERON:0002420!3.79e-07!8;UBERON:0007245!3.79e-07!8;UBERON:0010009!3.79e-07!8;UBERON:0010011!3.79e-07!8;UBERON:0000454!3.79e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.67e-29,54;UBERON:0002616,6.00e-24,46;UBERON:0001049,1.15e-23,52;UBERON:0005068,1.15e-23,52;UBERON:0006241,1.15e-23,52;UBERON:0007135,1.15e-23,52;UBERON:0000955,2.21e-23,47;UBERON:0006238,2.21e-23,47;UBERON:0001017,6.62e-23,73;UBERON:0001016,3.24e-22,75;UBERON:0002346,1.06e-18,64;UBERON:0003075,1.06e-18,64;UBERON:0007284,1.06e-18,64;UBERON:0002950,4.17e-17,4;UBERON:0001891,4.17e-17,4;UBERON:0009616,4.17e-17,4;UBERON:0010286,4.17e-17,4;UBERON:0004121,6.58e-17,95;UBERON:0000924,6.58e-17,95;UBERON:0006601,6.58e-17,95;UBERON:0010371,4.86e-16,73;UBERON:0003080,2.63e-15,40;UBERON:0002021,2.46e-14,10;UBERON:0000411,2.46e-14,10;UBERON:0001950,2.46e-14,10;UBERON:0004684,6.61e-14,3;UBERON:0002275,6.61e-14,3;UBERON:0002780,3.37e-13,39;UBERON:0001890,3.37e-13,39;UBERON:0006240,3.37e-13,39;UBERON:0002038,5.62e-13,3;UBERON:0009663,5.62e-13,3;UBERON:0009661,5.62e-13,3;UBERON:0000125,5.62e-13,3;UBERON:0002308,5.62e-13,3;UBERON:0003528,1.36e-12,29;UBERON:0002791,1.36e-12,29;UBERON:0001893,1.36e-12,29;UBERON:0004733,1.43e-12,6;UBERON:0004732,1.43e-12,6;UBERON:0002028,1.43e-12,6;UBERON:0007277,1.43e-12,6;UBERON:0010314,4.02e-12,92;UBERON:0003056,4.21e-12,49;UBERON:0002020,1.60e-10,34;UBERON:0001896,4.07e-10,2;UBERON:0002298,4.07e-10,2;UBERON:0005290,4.07e-10,2;UBERON:0010096,4.07e-10,2;UBERON:0003076,2.31e-09,12;UBERON:0003057,2.31e-09,12;UBERON:0000025,3.33e-09,114;UBERON:0000956,8.61e-09,21;UBERON:0001869,8.61e-09,21;UBERON:0000203,8.61e-09,21;UBERON:0004111,2.12e-08,122;UBERON:0002619,3.01e-08,17 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,0.571301968807607,0.441737081903227,0,0.0958454710182364,0,2.20231761998777,3.31987079021488,2.61131106535614,0.263772575460388,0.640413505216868,0,2.51264699101243,1.12552522006336,1.68078072554491,0.883885756421003,0.569486723196412,0.559198337475902,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,8.78342391034641,7.33063473847093,0,0,0,0,2.84602214869163,0,0.125654352112864,1.21677024134594,0.767146371990992,2.28566849015516,1.29793010454206,0,0,0,0,0,0,0.180062129805349,0,0.136072998302656,0,0.0937017245597288,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,3.04750385139728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0,1.71868654031819,1.20297227640581,1.37016503954128,0,2.02506750069542,0.900642406448441,1.35942722695261,0.51776031175182,0,0,0,0,0,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0,0.188626341386076,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0.214871054048298,0,0,0 | |||
|short_description=p8@Rph3a | |||
}} |
Revision as of 06:15, 14 September 2013
Short description: | p8@Rph3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Rph3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:121 |
Association with transcript: | -115bp_to_ENSMUST00000079204, NM_011286, uc008zil.1_5end |
EntrezGene: | Rph3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 6.61e-14 | 3 |
neuron of the substantia nigra | 5.62e-13 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.