FFCP PHASE1:Mm9::chr6:113293969..113293983,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=52163|HGNC=|MCL_coexpression_id=22|UniProt=Q91YS8,D3Z368|association_with_transcript=0bp_to_ENSMUST00000032409,ENSMUST00000155543_5end|description=CAGE_peak_2_at_Camk1_5end|id=chr6:113293969..113293983,-|ontology_enrichment_celltype=CL:0002319!2.11e-16!43;CL:0000221!2.21e-16!44;CL:0000133!2.21e-16!44;CL:0000055!1.22e-15!50;CL:0000117!4.12e-14!23;CL:0000337!4.12e-14!23;CL:0000393!2.63e-13!39;CL:0000211!2.63e-13!39;CL:0000540!4.23e-13!33;CL:0000047!4.23e-13!33;CL:0000031!4.23e-13!33;CL:0000404!4.23e-13!33;CL:0002321!4.68e-07!70;CL:0000220!4.68e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,3.08e-17,43;CL:0000221,3.20e-17,44;CL:0000133,3.20e-17,44;CL:0000117,2.79e-15,23;CL:0000337,2.79e-15,23;CL:0000393,1.08e-13,39;CL:0000211,1.08e-13,39;CL:0000540,1.25e-13,33;CL:0000047,1.25e-13,33;CL:0000031,1.25e-13,33;CL:0000404,1.25e-13,33;CL:0002321,2.80e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.03e-24!75;UBERON:0001016!7.03e-24!75;UBERON:0001017!8.78e-24!73;UBERON:0005743!8.78e-24!73;UBERON:0001049!4.63e-18!52;UBERON:0005068!4.63e-18!52;UBERON:0006241!4.63e-18!52;UBERON:0007135!4.63e-18!52;UBERON:0000955!7.12e-17!50;UBERON:0006238!7.12e-17!50;UBERON:0004121!9.01e-17!102;UBERON:0000924!9.01e-17!102;UBERON:0006601!9.01e-17!102;UBERON:0002020!1.56e-16!34;UBERON:0002616!2.84e-16!49;UBERON:0002346!2.67e-15!71;UBERON:0003075!2.67e-15!71;UBERON:0007284!2.67e-15!71;UBERON:0000033!9.74e-15!63;UBERON:0003080!7.74e-14!40;UBERON:0002791!2.40e-13!29;UBERON:0003528!2.40e-13!29;UBERON:0001893!2.40e-13!29;UBERON:0002780!2.41e-13!39;UBERON:0001890!2.41e-13!39;UBERON:0006240!2.41e-13!39;UBERON:0003056!4.08e-13!49;UBERON:0000025!7.43e-12!114;UBERON:0004111!2.31e-10!122;UBERON:0000956!4.34e-10!21;UBERON:0001869!4.34e-10!21;UBERON:0000203!4.34e-10!21;UBERON:0002619!2.54e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.78e-24,75;UBERON:0001017,3.65e-24,73;UBERON:0000073,5.81e-20,54;UBERON:0002346,1.04e-18,64;UBERON:0003075,1.04e-18,64;UBERON:0007284,1.04e-18,64;UBERON:0001049,1.90e-18,52;UBERON:0005068,1.90e-18,52;UBERON:0006241,1.90e-18,52;UBERON:0007135,1.90e-18,52;UBERON:0010314,1.05e-17,92;UBERON:0004121,1.25e-17,95;UBERON:0000924,1.25e-17,95;UBERON:0006601,1.25e-17,95;UBERON:0002020,1.91e-17,34;UBERON:0000955,1.01e-15,47;UBERON:0006238,1.01e-15,47;UBERON:0002616,4.31e-15,46;UBERON:0010371,4.21e-14,73;UBERON:0003528,5.56e-14,29;UBERON:0002791,5.56e-14,29;UBERON:0001893,5.56e-14,29;UBERON:0003080,7.15e-14,40;UBERON:0002780,2.42e-13,39;UBERON:0001890,2.42e-13,39;UBERON:0006240,2.42e-13,39;UBERON:0003056,3.50e-13,49;UBERON:0000025,3.88e-11,114;UBERON:0000956,6.96e-11,21;UBERON:0001869,6.96e-11,21;UBERON:0000203,6.96e-11,21;UBERON:0004111,1.18e-09,122;UBERON:0002619,5.93e-09,17|phase1_expression=1.12104192973356,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0.157731082679119,0,0,1.02051948181284,0,0.261199789138935,0.159992422793407,0,0,0,0.646413698057667,0.190023419456374,0.252030129759931,0,0,0,0,0.866554859253824,0.664938581433969,0,0.418531630736908,2.3440060335714,1.57057123192139,2.94115744015507,0,1.45653105909346,0.629484089877886,1.4192770370732,1.65192076945513,4.69434806608824,2.8343270329458,3.95435128922049,1.94429899074283,1.67983705950435,2.87505128729943,0,0,0,1.28629718017973,3.43840127926508,3.6097046459421,5.66486090406874,6.87688273053643,2.53532561402472,4.74382344896785,7.11435836888911,3.5995988691256,3.9554654502679,3.5524005747305,2.39680088414724,4.2264013585371,2.69592992002042,3.24014251996058,2.52389953621658,6.56997264128748,5.52171352379034,3.55223317723367,3.64212789869298,4.5960939330501,3.30347642998166,1.91531007127782,4.30098293117482,6.85808696197008,7.04454855738554,5.73004707612436,5.30447698102624,5.6276261003168,3.51435969886663,3.24091444021034,4.8406371471695,5.96478226640962,1.4387976733305,1.66257432234928,3.18850937571846,0,0,1.07940638327563,0,0,0.702222100658759,2.04516387093669,2.85764605063156,2.12003744706204,1.54927761754349,1.28326477414318,0,0,0.649473123033642,1.26679932737549,0.505524445014783,0.34255163915718,1.03575153458869,0.29688427812965,0.346970653532272,0.608930956624282,0.461230994512117,1.95939432718409,0.705532242814229,0.628332956648377,0.741584903203122,0.289198713839823,0.884610551949874,1.13236794963186,0.441683036920787,0.484875253135222,0,1.75668478206928,1.04723353406728,0.255457055208591,0.718890747035522,0,0.254140454146129,3.2953940669061,0.915001205637253,1.63350657746724,3.82413504423008,3.3243009452943,3.32460871295296,2.43361894601636,1.73126918545538,0.746441823660558,0.252722758433675,0.210441855886474,0.520481771850815,3.21862946206862,1.80062129805349,2.71268672104287,1.15662048557257,1.7935920839879,1.12442069471675,1.29351685369508,0.646703978798527,1.70195472151037,2.63926686245923,1.97276159184817,1.11218899690239,1.0447564995665,1.4404749548556,1.39323986772945,0,0.51469581422943,0.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| ||
|EntrezGene=52163 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q91YS8,D3Z368 | |||
|association_with_transcript=0bp_to_ENSMUST00000032409,ENSMUST00000155543_5end | |||
|description=CAGE_peak_2_at_Camk1_5end | |||
|id=chr6:113293969..113293983,- | |||
|ontology_enrichment_celltype=CL:0002319!2.11e-16!43;CL:0000221!2.21e-16!44;CL:0000133!2.21e-16!44;CL:0000055!1.22e-15!50;CL:0000117!4.12e-14!23;CL:0000337!4.12e-14!23;CL:0000393!2.63e-13!39;CL:0000211!2.63e-13!39;CL:0000540!4.23e-13!33;CL:0000047!4.23e-13!33;CL:0000031!4.23e-13!33;CL:0000404!4.23e-13!33;CL:0002321!4.68e-07!70;CL:0000220!4.68e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.08e-17,43;CL:0000221,3.20e-17,44;CL:0000133,3.20e-17,44;CL:0000117,2.79e-15,23;CL:0000337,2.79e-15,23;CL:0000393,1.08e-13,39;CL:0000211,1.08e-13,39;CL:0000540,1.25e-13,33;CL:0000047,1.25e-13,33;CL:0000031,1.25e-13,33;CL:0000404,1.25e-13,33;CL:0002321,2.80e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.03e-24!75;UBERON:0001016!7.03e-24!75;UBERON:0001017!8.78e-24!73;UBERON:0005743!8.78e-24!73;UBERON:0001049!4.63e-18!52;UBERON:0005068!4.63e-18!52;UBERON:0006241!4.63e-18!52;UBERON:0007135!4.63e-18!52;UBERON:0000955!7.12e-17!50;UBERON:0006238!7.12e-17!50;UBERON:0004121!9.01e-17!102;UBERON:0000924!9.01e-17!102;UBERON:0006601!9.01e-17!102;UBERON:0002020!1.56e-16!34;UBERON:0002616!2.84e-16!49;UBERON:0002346!2.67e-15!71;UBERON:0003075!2.67e-15!71;UBERON:0007284!2.67e-15!71;UBERON:0000033!9.74e-15!63;UBERON:0003080!7.74e-14!40;UBERON:0002791!2.40e-13!29;UBERON:0003528!2.40e-13!29;UBERON:0001893!2.40e-13!29;UBERON:0002780!2.41e-13!39;UBERON:0001890!2.41e-13!39;UBERON:0006240!2.41e-13!39;UBERON:0003056!4.08e-13!49;UBERON:0000025!7.43e-12!114;UBERON:0004111!2.31e-10!122;UBERON:0000956!4.34e-10!21;UBERON:0001869!4.34e-10!21;UBERON:0000203!4.34e-10!21;UBERON:0002619!2.54e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.78e-24,75;UBERON:0001017,3.65e-24,73;UBERON:0000073,5.81e-20,54;UBERON:0002346,1.04e-18,64;UBERON:0003075,1.04e-18,64;UBERON:0007284,1.04e-18,64;UBERON:0001049,1.90e-18,52;UBERON:0005068,1.90e-18,52;UBERON:0006241,1.90e-18,52;UBERON:0007135,1.90e-18,52;UBERON:0010314,1.05e-17,92;UBERON:0004121,1.25e-17,95;UBERON:0000924,1.25e-17,95;UBERON:0006601,1.25e-17,95;UBERON:0002020,1.91e-17,34;UBERON:0000955,1.01e-15,47;UBERON:0006238,1.01e-15,47;UBERON:0002616,4.31e-15,46;UBERON:0010371,4.21e-14,73;UBERON:0003528,5.56e-14,29;UBERON:0002791,5.56e-14,29;UBERON:0001893,5.56e-14,29;UBERON:0003080,7.15e-14,40;UBERON:0002780,2.42e-13,39;UBERON:0001890,2.42e-13,39;UBERON:0006240,2.42e-13,39;UBERON:0003056,3.50e-13,49;UBERON:0000025,3.88e-11,114;UBERON:0000956,6.96e-11,21;UBERON:0001869,6.96e-11,21;UBERON:0000203,6.96e-11,21;UBERON:0004111,1.18e-09,122;UBERON:0002619,5.93e-09,17 | |||
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| |||
|short_description=p2@Camk1 | |||
}} |
Revision as of 08:31, 14 September 2013
Short description: | p2@Camk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Camk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000032409, ENSMUST00000155543_5end |
EntrezGene: | Camk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.08e-17 | 43 |
ectodermal cell | 3.20e-17 | 44 |
neurectodermal cell | 3.20e-17 | 44 |
CNS neuron (sensu Vertebrata) | 2.79e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.79e-15 | 23 |
electrically responsive cell | 1.08e-13 | 39 |
electrically active cell | 1.08e-13 | 39 |
neuron | 1.25e-13 | 33 |
neuronal stem cell | 1.25e-13 | 33 |
neuroblast | 1.25e-13 | 33 |
electrically signaling cell | 1.25e-13 | 33 |
embryonic cell | 2.80e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.78e-24 | 75 |
central nervous system | 3.65e-24 | 73 |
regional part of nervous system | 5.81e-20 | 54 |
neurectoderm | 1.04e-18 | 64 |
neural plate | 1.04e-18 | 64 |
presumptive neural plate | 1.04e-18 | 64 |
neural tube | 1.90e-18 | 52 |
neural rod | 1.90e-18 | 52 |
future spinal cord | 1.90e-18 | 52 |
neural keel | 1.90e-18 | 52 |
structure with developmental contribution from neural crest | 1.05e-17 | 92 |
ectoderm-derived structure | 1.25e-17 | 95 |
ectoderm | 1.25e-17 | 95 |
presumptive ectoderm | 1.25e-17 | 95 |
gray matter | 1.91e-17 | 34 |
brain | 1.01e-15 | 47 |
future brain | 1.01e-15 | 47 |
regional part of brain | 4.31e-15 | 46 |
ecto-epithelium | 4.21e-14 | 73 |
brain grey matter | 5.56e-14 | 29 |
regional part of telencephalon | 5.56e-14 | 29 |
telencephalon | 5.56e-14 | 29 |
anterior neural tube | 7.15e-14 | 40 |
regional part of forebrain | 2.42e-13 | 39 |
forebrain | 2.42e-13 | 39 |
future forebrain | 2.42e-13 | 39 |
pre-chordal neural plate | 3.50e-13 | 49 |
tube | 3.88e-11 | 114 |
cerebral cortex | 6.96e-11 | 21 |
cerebral hemisphere | 6.96e-11 | 21 |
pallium | 6.96e-11 | 21 |
anatomical conduit | 1.18e-09 | 122 |
regional part of cerebral cortex | 5.93e-09 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.