FFCP PHASE1:Mm9::chr9:4796218..4796267,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14802|HGNC=|MCL_coexpression_id=1|UniProt=G5E863,Q9Z2W8,E9PX01,Q8C069|association_with_transcript=0bp_to_ENSMUST00000027020,ENSMUST00000063508,ENSMUST00000163309,NM_001113180,NM_001113181,NM_019691,uc009obp.2,uc009obq.2,uc012gnm.1_5end|description=CAGE_peak_1_at_Gria4_5end|id=chr9:4796218..4796267,-|ontology_enrichment_celltype=CL:0000540!2.57e-16!33;CL:0000047!2.57e-16!33;CL:0000031!2.57e-16!33;CL:0000404!2.57e-16!33;CL:0000393!8.03e-15!39;CL:0000211!8.03e-15!39;CL:0000221!4.11e-12!44;CL:0000133!4.11e-12!44;CL:0000117!5.73e-12!23;CL:0000337!5.73e-12!23;CL:0002319!8.83e-12!43;CL:0000055!1.84e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.09e-18,33;CL:0000047,1.09e-18,33;CL:0000031,1.09e-18,33;CL:0000404,1.09e-18,33;CL:0000393,1.36e-16,39;CL:0000211,1.36e-16,39;CL:0000117,1.22e-13,23;CL:0000337,1.22e-13,23;CL:0000221,8.40e-12,44;CL:0000133,8.40e-12,44;CL:0002319,1.98e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.54e-29!102;UBERON:0000924!8.54e-29!102;UBERON:0006601!8.54e-29!102;UBERON:0001017!1.50e-28!73;UBERON:0005743!1.50e-28!73;UBERON:0000073!5.75e-28!75;UBERON:0001016!5.75e-28!75;UBERON:0002346!4.34e-26!71;UBERON:0003075!4.34e-26!71;UBERON:0007284!4.34e-26!71;UBERON:0000033!1.12e-21!63;UBERON:0001049!5.65e-21!52;UBERON:0005068!5.65e-21!52;UBERON:0006241!5.65e-21!52;UBERON:0007135!5.65e-21!52;UBERON:0000955!5.56e-20!50;UBERON:0006238!5.56e-20!50;UBERON:0002616!2.96e-19!49;UBERON:0003056!9.70e-18!49;UBERON:0002020!3.98e-16!34;UBERON:0003080!3.50e-15!40;UBERON:0002780!1.66e-14!39;UBERON:0001890!1.66e-14!39;UBERON:0006240!1.66e-14!39;UBERON:0002791!4.09e-13!29;UBERON:0003528!4.09e-13!29;UBERON:0001893!4.09e-13!29;UBERON:0000956!4.94e-09!21;UBERON:0001869!4.94e-09!21;UBERON:0000203!4.94e-09!21;UBERON:0007811!5.92e-09!86;UBERON:0000153!1.75e-08!94;UBERON:0002619!4.70e-08!17;UBERON:0002021!8.54e-08!10;UBERON:0000411!8.54e-08!10;UBERON:0001950!8.54e-08!10;UBERON:0000468!1.40e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.93e-30,73;UBERON:0001016,8.26e-29,75;UBERON:0002346,3.18e-27,64;UBERON:0003075,3.18e-27,64;UBERON:0007284,3.18e-27,64;UBERON:0004121,1.53e-26,95;UBERON:0000924,1.53e-26,95;UBERON:0006601,1.53e-26,95;UBERON:0000073,1.22e-23,54;UBERON:0010371,5.40e-23,73;UBERON:0001049,5.63e-22,52;UBERON:0005068,5.63e-22,52;UBERON:0006241,5.63e-22,52;UBERON:0007135,5.63e-22,52;UBERON:0003056,3.68e-19,49;UBERON:0000955,1.83e-18,47;UBERON:0006238,1.83e-18,47;UBERON:0002020,4.92e-18,34;UBERON:0002616,1.13e-17,46;UBERON:0010314,2.33e-17,92;UBERON:0003080,3.44e-16,40;UBERON:0002780,2.02e-15,39;UBERON:0001890,2.02e-15,39;UBERON:0006240,2.02e-15,39;UBERON:0003528,1.48e-14,29;UBERON:0002791,1.48e-14,29;UBERON:0001893,1.48e-14,29;UBERON:0000956,7.62e-10,21;UBERON:0001869,7.62e-10,21;UBERON:0000203,7.62e-10,21;UBERON:0002021,8.45e-09,10;UBERON:0000411,8.45e-09,10;UBERON:0001950,8.45e-09,10;UBERON:0002619,1.07e-08,17|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.26971862646661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01434908760924,3.95370031756107,1.83546752161682,0.782391344348039,0.218025156380447,0,0.972149495371417,0.139986421625363,0,0,0,0,0,0.85960031981627,1.03134418455488,20.0293296251002,19.5726662330652,20.9164363157039,0.677689064138264,0,0,0,0,0.299600110518405,1.15265491596466,4.25127410464758,3.51015439662396,5.67877395648731,38.8485338789173,35.3389665522582,8.94182834269164,6.80502844229478,6.43453150627015,63.8672109796454,50.4364985436492,56.2199911717851,14.1118327871307,13.9061218275663,19.7947080811569,42.4358158482099,31.5147061617741,40.7971321564083,49.4976023595762,52.1080351724717,30.0103107778734,0.37863096666592,0.831287161174641,0.289864488701678,0,0.679971333707751,0.539703191637817,0,0,1.82577746171277,0,0,0,6.76048414928066,0,0,0,0,0,0,1.37020655662872,0,2.07818994690755,4.68410382268567,3.34912026143355,2.99800146432876,3.3158980921577,4.11560474974967,0.502666365318702,0.494389935468748,0.578397427679647,0,0,0.220841518460394,0,0,84.9064311333487,77.0763881073515,0.510914110417183,0,0,0,58.1187680890712,33.8550446085784,21.6125485634127,43.2822557278768,45.7730668621292,46.3367339367819,44.7785886067011,5.70300437561771,0.373220911830279,0.505445516867349,5.05060454127538,1.17108398666433,4.59804208866946,3.60124259610698,6.32960234910003,11.0219128625151,12.9394857487698,10.1197862524507,13.9699820199068,0.431135985865684,1.89106080167819,0.879755620819744,1.09597866213787,1.39023624612799,1.74126083261083,0.205782136407943,1.99034266818493,0,0,0,0.207125772535502,0,0,1.18372367792605,0.590292695242212,0.462801338662135,0,0.536546802799238,0.583826711835847,0.329119699826961,0,0.324275238183423,0,0.219550115291051,0,21.2392848049769,11.216602749342,0.330418782983798,0,1.49301775374664,2.32236671860439,2.19074684247559,1.4117846723634,0.667134131534611,1.52180500890047,0,0.494096864172033,0.754005626400808,1.1937388322469,1.75467678407208,0.898819408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| ||
|EntrezGene=14802 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=G5E863,Q9Z2W8,E9PX01,Q8C069 | |||
|association_with_transcript=0bp_to_ENSMUST00000027020,ENSMUST00000063508,ENSMUST00000163309,NM_001113180,NM_001113181,NM_019691,uc009obp.2,uc009obq.2,uc012gnm.1_5end | |||
|description=CAGE_peak_1_at_Gria4_5end | |||
|id=chr9:4796218..4796267,- | |||
|ontology_enrichment_celltype=CL:0000540!2.57e-16!33;CL:0000047!2.57e-16!33;CL:0000031!2.57e-16!33;CL:0000404!2.57e-16!33;CL:0000393!8.03e-15!39;CL:0000211!8.03e-15!39;CL:0000221!4.11e-12!44;CL:0000133!4.11e-12!44;CL:0000117!5.73e-12!23;CL:0000337!5.73e-12!23;CL:0002319!8.83e-12!43;CL:0000055!1.84e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.09e-18,33;CL:0000047,1.09e-18,33;CL:0000031,1.09e-18,33;CL:0000404,1.09e-18,33;CL:0000393,1.36e-16,39;CL:0000211,1.36e-16,39;CL:0000117,1.22e-13,23;CL:0000337,1.22e-13,23;CL:0000221,8.40e-12,44;CL:0000133,8.40e-12,44;CL:0002319,1.98e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.54e-29!102;UBERON:0000924!8.54e-29!102;UBERON:0006601!8.54e-29!102;UBERON:0001017!1.50e-28!73;UBERON:0005743!1.50e-28!73;UBERON:0000073!5.75e-28!75;UBERON:0001016!5.75e-28!75;UBERON:0002346!4.34e-26!71;UBERON:0003075!4.34e-26!71;UBERON:0007284!4.34e-26!71;UBERON:0000033!1.12e-21!63;UBERON:0001049!5.65e-21!52;UBERON:0005068!5.65e-21!52;UBERON:0006241!5.65e-21!52;UBERON:0007135!5.65e-21!52;UBERON:0000955!5.56e-20!50;UBERON:0006238!5.56e-20!50;UBERON:0002616!2.96e-19!49;UBERON:0003056!9.70e-18!49;UBERON:0002020!3.98e-16!34;UBERON:0003080!3.50e-15!40;UBERON:0002780!1.66e-14!39;UBERON:0001890!1.66e-14!39;UBERON:0006240!1.66e-14!39;UBERON:0002791!4.09e-13!29;UBERON:0003528!4.09e-13!29;UBERON:0001893!4.09e-13!29;UBERON:0000956!4.94e-09!21;UBERON:0001869!4.94e-09!21;UBERON:0000203!4.94e-09!21;UBERON:0007811!5.92e-09!86;UBERON:0000153!1.75e-08!94;UBERON:0002619!4.70e-08!17;UBERON:0002021!8.54e-08!10;UBERON:0000411!8.54e-08!10;UBERON:0001950!8.54e-08!10;UBERON:0000468!1.40e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.93e-30,73;UBERON:0001016,8.26e-29,75;UBERON:0002346,3.18e-27,64;UBERON:0003075,3.18e-27,64;UBERON:0007284,3.18e-27,64;UBERON:0004121,1.53e-26,95;UBERON:0000924,1.53e-26,95;UBERON:0006601,1.53e-26,95;UBERON:0000073,1.22e-23,54;UBERON:0010371,5.40e-23,73;UBERON:0001049,5.63e-22,52;UBERON:0005068,5.63e-22,52;UBERON:0006241,5.63e-22,52;UBERON:0007135,5.63e-22,52;UBERON:0003056,3.68e-19,49;UBERON:0000955,1.83e-18,47;UBERON:0006238,1.83e-18,47;UBERON:0002020,4.92e-18,34;UBERON:0002616,1.13e-17,46;UBERON:0010314,2.33e-17,92;UBERON:0003080,3.44e-16,40;UBERON:0002780,2.02e-15,39;UBERON:0001890,2.02e-15,39;UBERON:0006240,2.02e-15,39;UBERON:0003528,1.48e-14,29;UBERON:0002791,1.48e-14,29;UBERON:0001893,1.48e-14,29;UBERON:0000956,7.62e-10,21;UBERON:0001869,7.62e-10,21;UBERON:0000203,7.62e-10,21;UBERON:0002021,8.45e-09,10;UBERON:0000411,8.45e-09,10;UBERON:0001950,8.45e-09,10;UBERON:0002619,1.07e-08,17 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.26971862646661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01434908760924,3.95370031756107,1.83546752161682,0.782391344348039,0.218025156380447,0,0.972149495371417,0.139986421625363,0,0,0,0,0,0.85960031981627,1.03134418455488,20.0293296251002,19.5726662330652,20.9164363157039,0.677689064138264,0,0,0,0,0.299600110518405,1.15265491596466,4.25127410464758,3.51015439662396,5.67877395648731,38.8485338789173,35.3389665522582,8.94182834269164,6.80502844229478,6.43453150627015,63.8672109796454,50.4364985436492,56.2199911717851,14.1118327871307,13.9061218275663,19.7947080811569,42.4358158482099,31.5147061617741,40.7971321564083,49.4976023595762,52.1080351724717,30.0103107778734,0.37863096666592,0.831287161174641,0.289864488701678,0,0.679971333707751,0.539703191637817,0,0,1.82577746171277,0,0,0,6.76048414928066,0,0,0,0,0,0,1.37020655662872,0,2.07818994690755,4.68410382268567,3.34912026143355,2.99800146432876,3.3158980921577,4.11560474974967,0.502666365318702,0.494389935468748,0.578397427679647,0,0,0.220841518460394,0,0,84.9064311333487,77.0763881073515,0.510914110417183,0,0,0,58.1187680890712,33.8550446085784,21.6125485634127,43.2822557278768,45.7730668621292,46.3367339367819,44.7785886067011,5.70300437561771,0.373220911830279,0.505445516867349,5.05060454127538,1.17108398666433,4.59804208866946,3.60124259610698,6.32960234910003,11.0219128625151,12.9394857487698,10.1197862524507,13.9699820199068,0.431135985865684,1.89106080167819,0.879755620819744,1.09597866213787,1.39023624612799,1.74126083261083,0.205782136407943,1.99034266818493,0,0,0,0.207125772535502,0,0,1.18372367792605,0.590292695242212,0.462801338662135,0,0.536546802799238,0.583826711835847,0.329119699826961,0,0.324275238183423,0,0.219550115291051,0,21.2392848049769,11.216602749342,0.330418782983798,0,1.49301775374664,2.32236671860439,2.19074684247559,1.4117846723634,0.667134131534611,1.52180500890047,0,0.494096864172033,0.754005626400808,1.1937388322469,1.75467678407208,0.898819408654221,0.648414149624083,0.199141273254367,2.0863469104839,4.56994050438915,7.88954149711563,3.46207257337034,3.87904974335251,5.75113723100612,4.23684798732524,1.18088118383682,1.56998727841375,0.370191491765402,0,0.333690211432188,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.37898282354097,0.977789858652155,0.678980343100753,0,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0.163863314715738,0.345369963731791,0,0,0,0,0,49.7706828962155,48.1740031893955,0,0,21.7700671397217,26.9402733564681,21.5423397732799,16.9667846546312,14.704712489438,22.0799694015289,12.9539424535966,16.3663280430335,15.4162233399144,58.8018009051907,0,2.13678724400706,7.32991317091092,1.48473110675282,0,0.485561272309963,0,0.377210159511796,0,0,0.775284879504663,0,0.712994756769443,0,0,0,14.9793426531667,1.26042765821917,0.388076051348264,0.428674070063185,4.61084607469911,6.0645397984704,4.77192159746151,2.13125464380219,0,0.21183207086382,0.661585194164886,0.98931751764888,0.807322133479528,1.02531972377865,0.954978752025092,0.984845398470368,0.291480836629851,52.2899351669637,0,0.82554747185289,0.185194527369712,0,0,0.228778173206523,0,0,0,0,2.37251995185852,2.64315307264903,2.05210147561422,2.71814784818809,1.9652630737156,0.944050424693745,1.1571483801547,0.785267825952089,0.388844919875379,0,0.56369293868419,2.69129782879162,2.48187735685646,4.083474955225,2.45403664607689,3.04121025883401,3.87278887530988,0.651021924219751,0.838874755405687,0.241584120826006,0.288030006257865,0,0.608175645870493,0.205421914329655,0.129920822977795,0.358053391334963,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,0,0,0,5.02292944483695,1.12609485270709,1.83151624267265,0.214368379079066,0,45.1801474093653,45.1118731777033,41.2484769676366,31.2772791865511,54.1215190618807,64.9638751755142,60.7520250208625,52.6875807772338,58.4553707589624,47.1161883694156,0.62272408550506,1.99512436700516,4.09760653809922,4.37592090722929,3.77303692730368,4.59608771125035,4.4449345560323,7.2112270033613,7.06022261101994,5.81203587056734,6.84394109703647,6.41329560712659,5.71213195566283,5.76226371643823,6.54764346093991,3.81034953026459,5.91010062318763,4.62982129112892,5.76920261124629,5.4463600449727,7.54312355247914,6.38912902173615,7.39152188836695,7.26732083161643,7.0582035311498,7.02301245500915,6.95126296916536,5.26139422875686,5.29636043998861,2.24456908663095,5.69448086996036,5.71325997778268,4.91077251803627,7.2820315357404,5.5942917184531,6.99469618226249,3.97683734357194,2.79332370262788,2.48674831689496,1.54413993383661,1.85494268496337 | |||
|short_description=p1@Gria4 | |||
}} |
Revision as of 18:06, 14 September 2013
Short description: | p1@Gria4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gria4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000027020, ENSMUST00000063508, ENSMUST00000163309, NM_001113180, NM_001113181, NM_019691, uc009obp.2, uc009obq.2, uc012gnm.1_5end |
EntrezGene: | Gria4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.09e-18 | 33 |
neuronal stem cell | 1.09e-18 | 33 |
neuroblast | 1.09e-18 | 33 |
electrically signaling cell | 1.09e-18 | 33 |
electrically responsive cell | 1.36e-16 | 39 |
electrically active cell | 1.36e-16 | 39 |
CNS neuron (sensu Vertebrata) | 1.22e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-13 | 23 |
ectodermal cell | 8.40e-12 | 44 |
neurectodermal cell | 8.40e-12 | 44 |
neural cell | 1.98e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.93e-30 | 73 |
nervous system | 8.26e-29 | 75 |
neurectoderm | 3.18e-27 | 64 |
neural plate | 3.18e-27 | 64 |
presumptive neural plate | 3.18e-27 | 64 |
ectoderm-derived structure | 1.53e-26 | 95 |
ectoderm | 1.53e-26 | 95 |
presumptive ectoderm | 1.53e-26 | 95 |
regional part of nervous system | 1.22e-23 | 54 |
ecto-epithelium | 5.40e-23 | 73 |
neural tube | 5.63e-22 | 52 |
neural rod | 5.63e-22 | 52 |
future spinal cord | 5.63e-22 | 52 |
neural keel | 5.63e-22 | 52 |
pre-chordal neural plate | 3.68e-19 | 49 |
brain | 1.83e-18 | 47 |
future brain | 1.83e-18 | 47 |
gray matter | 4.92e-18 | 34 |
regional part of brain | 1.13e-17 | 46 |
structure with developmental contribution from neural crest | 2.33e-17 | 92 |
anterior neural tube | 3.44e-16 | 40 |
regional part of forebrain | 2.02e-15 | 39 |
forebrain | 2.02e-15 | 39 |
future forebrain | 2.02e-15 | 39 |
brain grey matter | 1.48e-14 | 29 |
regional part of telencephalon | 1.48e-14 | 29 |
telencephalon | 1.48e-14 | 29 |
cerebral cortex | 7.62e-10 | 21 |
cerebral hemisphere | 7.62e-10 | 21 |
pallium | 7.62e-10 | 21 |
occipital lobe | 8.45e-09 | 10 |
visual cortex | 8.45e-09 | 10 |
neocortex | 8.45e-09 | 10 |
regional part of cerebral cortex | 1.07e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.