FFCP PHASE1:Hg19::chr11:5646217..5646260,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53840 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10063 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc001mbi.2,uc009yeq.2_5end | |||
|description=CAGE_peak_1_at_TRIM34_5end | |||
|id=chr11:5646217..5646260,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.26e-26!140;CL:0002087!6.91e-25!119;CL:0002031!4.79e-23!124;CL:0000037!3.71e-17!172;CL:0000566!3.71e-17!172;CL:0000766!2.27e-16!76;CL:0002032!3.91e-16!165;CL:0000837!3.91e-16!165;CL:0000557!7.34e-15!71;CL:0000839!1.18e-14!70;CL:0000988!1.31e-14!182;CL:0002320!1.46e-14!365;CL:0000134!2.19e-14!358;CL:0002194!2.62e-14!63;CL:0000576!2.62e-14!63;CL:0000040!2.62e-14!63;CL:0000559!2.62e-14!63;CL:0000048!1.54e-13!430;CL:0002009!4.22e-13!65;CL:0002057!7.24e-13!42;CL:0000723!9.86e-13!436;CL:0000034!5.70e-12!444;CL:0000860!1.69e-10!45;CL:0000219!1.79e-10!390;CL:0000945!3.33e-10!24;CL:0000826!3.33e-10!24;CL:0000542!3.64e-10!53;CL:0000051!3.64e-10!53;CL:0000838!8.47e-10!52;CL:0000236!1.12e-07!14;CL:0000763!2.24e-07!112;CL:0000049!2.24e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.22e-10;24!CL:0000473;1.26e-09;39!CL:0000234;1.26e-09;39!CL:0000576;1.38e-09;48!CL:0000860;4.22e-09;33!CL:0002057;4.22e-09;33!CL:0002087;2.63e-08;104!CL:0000766;3.46e-08;69!CL:0000236;2.57e-07;13!CL:0000738;3.55e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.58e-28,136;CL:0002087,1.73e-27,115;CL:0002031,2.45e-25,120;CL:0000766,5.54e-19,72;CL:0000037,1.70e-18,168;CL:0002032,1.89e-17,161;CL:0000837,1.89e-17,161;CL:0000557,2.65e-17,67;CL:0000839,3.33e-17,66;CL:0002194,5.21e-17,59;CL:0000576,5.21e-17,59;CL:0000040,5.21e-17,59;CL:0000559,5.21e-17,59;CL:0000988,4.87e-16,177;CL:0000473,1.04e-15,48;CL:0000234,1.04e-15,48;CL:0002320,1.58e-15,361;CL:0002009,1.79e-15,61;CL:0000134,2.36e-15,354;CL:0000048,2.62e-14,427;CL:0000723,1.53e-13,433;CL:0000860,5.41e-13,42;CL:0002057,5.41e-13,42;CL:0000034,1.16e-12,441;CL:0000219,1.98e-11,386;CL:0000945,3.07e-10,24;CL:0000826,3.07e-10,24;CL:0000542,3.36e-10,53;CL:0000051,3.36e-10,53;CL:0000838,7.84e-10,52;CL:0000763,2.47e-08,108;CL:0000049,2.47e-08,108;CL:0000236,1.06e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;5.04e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.77e-22!112;UBERON:0002390!1.30e-21!102;UBERON:0003061!1.30e-21!102;UBERON:0002371!2.56e-15!80;UBERON:0002384!8.87e-14!375;UBERON:0003081!2.58e-12!216;UBERON:0004765!4.57e-12!101;UBERON:0001434!4.57e-12!101;UBERON:0001474!7.99e-12!86;UBERON:0002405!7.21e-11!115;UBERON:0002204!3.39e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.26e-24,108;UBERON:0002390,5.88e-24,98;UBERON:0003061,5.88e-24,98;UBERON:0002405,1.66e-20,93;UBERON:0002371,1.54e-17,76;UBERON:0003081,1.35e-15,203;UBERON:0002384,9.83e-15,371;UBERON:0004765,2.81e-14,90;UBERON:0001434,7.63e-14,100;UBERON:0001474,1.23e-13,82;UBERON:0000926,2.60e-12,315;UBERON:0004120,2.60e-12,315;UBERON:0006603,2.60e-12,315;UBERON:0002204,3.05e-11,167 | |||
|phase1_expression=6.35874327446948,4.71021152560163,12.6858963686374,5.00366491765652,6.70441641640932,8.72338524100369,0,5.05375898741465,3.3954131665979,0.982935746006035,2.79120467188971,1.09220686065086,2.11013582582763,7.67351388352289,5.63375538737457,4.70627602516243,1.80808358407193,9.49403117503585,3.90346239032406,1.23121058076788,1.02000345622126,0.313454721478088,4.29353980696585,2.18999080116615,0.502170558379211,10.1629829644775,7.22485187159523,9.44529375764151,3.93364276848904,1.53531759238885,3.2511385896376,4.59710612239464,0.90361775633475,1.10926203050036,11.0778096829831,4.12290774213522,6.45920966536664,3.32397245119126,3.40925560699241,5.4252717678963,22.8393783724723,16.8424706329869,20.0908942754665,10.03247847579,4.91238726795452,8.24785808038575,5.34586784883075,1.23350366406548,3.71647645074124,20.1384674625505,18.1874101635661,19.8645073106412,5.86067657252252,1.93645405075148,0,5.64727018627814,2.18324920046277,5.8428105955722,21.1197885735923,9.9487998393589,10.8687311385837,26.3881040149373,16.5554835825954,18.7538890234385,26.4090407152011,13.6172453925874,13.0792672289071,17.587406567972,21.3807996552283,17.1579187317042,38.1401686659022,19.8869923433285,27.8486900947978,29.5757400836718,23.1738686961897,22.852792360413,23.7013411719105,24.4788335331655,18.1619912967701,17.6707901119574,23.0743345550945,21.3717059904622,10.5597746676794,26.7607919518444,21.3482220927253,15.7890182349608,27.2269271184488,25.8638597979517,28.4249295297491,20.989182599778,5.69212969109448,6.45960908308033,10.7036503875064,6.60856642895129,5.60508562981536,10.7987474757782,3.93419540227666,3.53709686474248,3.49522548299166,14.7124115943797,4.88883399950386,8.99550830895993,3.89653456815823,12.1437398004839,11.4896303915187,12.4058980966828,14.8942125070759,9.99112293860266,10.9249851950298,8.87964684859851,9.119550586933,8.69409257205158,10.0834862950201,8.82884732696053,11.4989076185474,8.61151004501503,8.04763036564035,11.6833331464094,11.1328664488581,10.8312240870193,9.76625180784628,10.4549724889321,12.9494602406885,17.0222192835376,8.74515085866421,14.206635122641,9.03240796613151,4.63695509416885,1.60464117470104,2.31719046212478,4.87613732627923,4.02420515822182,3.19656404608826,6.14446559053763,7.52006865953834,6.51809335323707,3.9764297352555,1.94653948121054,3.11964896641424,4.21285855178871,1.75669571386252,5.43563163315507,1.09288586487763,2.96627554227544,15.5782748954248,11.3184329244524,11.3014266441035,5.00830311041218,6.29194401858141,8.17206502925043,3.7764857399674,4.30117297553062,3.81854551768354,2.82653970962005,3.35599548967925,3.57653454522088,3.55291443112578,9.04458657092651,4.98072767761394,9.37217715741077,7.25092770796465,3.04108842287405,4.88124115096339,4.77962004449629,1.62028389576352,9.46577119811245,10.7774098860562,8.22063807528252,4.5994991239765,3.79706263827252,2.93122790288652,3.9534125230819,3.87780264148325,0,1.49091585508596,6.07826455989983,12.8436905388822,11.4734648299525,6.02936249737207,1.12135520028461,5.33744978648525,0.98667019366864,4.66816553099649,4.84958419450877,4.57693328717684,2.57307626996383,2.30470369792,0,2.49728061464256,2.2818872861778,1.79338416662161,1.17434498643765,0.971237666208789,1.12360645361799,4.69554593886255,3.0708579327942,3.82305390350332,14.2560342873846,5.93440630268536,0.910161361938026,1.43723628363248,3.53505839303539,1.25118519871964,6.09541054065202,5.26773145057006,5.82326812018137,4.5071417671979,5.55817697484103,7.5343646989322,5.12537733164562,6.14602513362729,8.10245959427886,7.21367704669072,17.5195567231028,7.44467425326359,8.43881661206331,6.13853132515551,18.1752317455762,6.25939310767636,14.3864990568743,11.3603069605317,6.85114267947954,5.4259389539356,3.67195621010264,5.45492241181669,4.30206893083506,0.365921118388786,0.397589304964456,0.580969714347592,1.0366105501537,0.756962552626885,1.09493207722749,7.8224766164908,3.85944562915731,5.52539685409922,10.2160944167035,8.66255378003503,1.53798840051797,2.02301628093722,1.44606617930089,1.8749975364507,0.871517776369625,0.949082476444386,1.48314438976181,3.13954344200554,1.53898862778556,1.4763109092493,0,0.4115740113314,1.47008711385542,6.33775174109154,1.96565443335525,3.54473944008842,2.20731549707325,8.85516757510418,2.57351715447788,5.1582634142054,1.1240175325762,2.91534019993729,5.09236448371913,1.3032332212413,1.03993478527958,1.44331342025273,3.13012093432707,4.22671299248958,9.3838191044698,5.55582615091933,6.46864117597634,0.790204397959275,0.858486162094873,24.1292665965649,10.9982004615442,10.1069190356335,2.81201501960331,7.55919576894868,7.3723050566041,1.43293636324557,4.35950907770943,2.68367875415648,12.3165809473986,10.0375214775078,10.7810620081201,9.07955706526857,7.19581870530366,4.69884417762051,6.11181480893244,4.68869788840188,1.71072446022705,2.46785982487976,5.70651809903443,10.0039251420702,1.45770409648969,2.1798003441664,3.0802080044799,4.00742318849111,3.57656445851882,0.845302752556,6.38251479803689,0,1.028829497048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| |||
|short_description=p1@TRIM34 | |||
}} |
Revision as of 06:19, 11 January 2014
Short description: | p1@TRIM34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM34_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001mbi.2, uc009yeq.2_5end |
EntrezGene: | TRIM34 |
HGNC: | 10063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.26e-24 | 108 |
hematopoietic system | 5.88e-24 | 98 |
blood island | 5.88e-24 | 98 |
immune system | 1.66e-20 | 93 |
bone marrow | 1.54e-17 | 76 |
lateral plate mesoderm | 1.35e-15 | 203 |
connective tissue | 9.83e-15 | 371 |
skeletal element | 2.81e-14 | 90 |
skeletal system | 7.63e-14 | 100 |
bone element | 1.23e-13 | 82 |
mesoderm | 2.60e-12 | 315 |
mesoderm-derived structure | 2.60e-12 | 315 |
presumptive mesoderm | 2.60e-12 | 315 |
musculoskeletal system | 3.05e-11 | 167 |