FFCP PHASE1:Hg19::chr4:160189282..160189289,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9693 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16854 | |||
|TSSclassifier=weak | |||
|UniProt=Q9Y4G8 | |||
|association_with_transcript=284bp_to_NM_014247,uc003iqg.3_5end | |||
|coexpression_cluster_id=C185 | |||
|description=CAGE_peak_38_at_RAPGEF2_5end | |||
|id=chr4:160189282..160189289,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-50;4!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-50,4;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0001893!7.96e-50!34;UBERON:0001869!1.44e-47!32;UBERON:0001049!2.01e-46!57;UBERON:0005068!2.01e-46!57;UBERON:0006241!2.01e-46!57;UBERON:0007135!2.01e-46!57;UBERON:0002791!5.44e-46!33;UBERON:0002780!3.00e-45!41;UBERON:0001890!3.00e-45!41;UBERON:0006240!3.00e-45!41;UBERON:0002616!1.07e-44!59;UBERON:0002020!1.47e-44!34;UBERON:0003528!1.47e-44!34;UBERON:0003080!4.31e-44!42;UBERON:0000955!1.91e-40!69;UBERON:0006238!1.91e-40!69;UBERON:0001017!2.43e-36!82;UBERON:0000073!3.95e-36!94;UBERON:0001016!3.95e-36!94;UBERON:0003075!1.30e-34!86;UBERON:0007284!1.30e-34!86;UBERON:0005743!1.98e-34!86;UBERON:0002346!7.67e-33!90;UBERON:0003056!2.73e-32!61;UBERON:0000956!7.17e-27!25;UBERON:0000203!7.17e-27!25;UBERON:0000033!1.31e-26!123;UBERON:0009663!3.21e-26!7;UBERON:0002619!7.60e-26!22;UBERON:0000153!4.09e-25!129;UBERON:0007811!4.09e-25!129;UBERON:0001950!1.66e-23!20;UBERON:0007023!7.11e-23!115;UBERON:0004121!1.36e-22!169;UBERON:0000924!6.23e-22!173;UBERON:0006601!6.23e-22!173;UBERON:0000200!6.28e-22!6;UBERON:0002308!2.80e-20!9;UBERON:0002420!2.80e-20!9;UBERON:0000125!2.80e-20!9;UBERON:0007245!2.80e-20!9;UBERON:0010009!2.80e-20!9;UBERON:0010011!2.80e-20!9;UBERON:0000454!2.80e-20!9;UBERON:0002771!1.23e-16!3;UBERON:0000369!3.10e-12!4;UBERON:0002435!3.10e-12!4;UBERON:0000204!3.10e-12!4;UBERON:0010082!3.10e-12!4;UBERON:0001875!1.28e-11!2;UBERON:0006514!1.28e-11!2;UBERON:0001873!1.58e-11!2;UBERON:0010122!1.58e-11!2;UBERON:0000064!2.19e-11!219;UBERON:0000025!2.98e-11!194;UBERON:0001871!1.07e-10!7;UBERON:0002298!2.27e-10!8;UBERON:0001872!3.02e-10!5;UBERON:0000477!5.59e-10!286;UBERON:0004111!5.01e-08!241;UBERON:0005383!5.80e-08!3;UBERON:0005382!5.80e-08!3;UBERON:0001896!1.19e-07!3;UBERON:0005290!1.19e-07!3;UBERON:0010096!1.19e-07!3;UBERON:0000483!3.60e-07!309;UBERON:0000475!3.66e-07!365;UBERON:0000119!4.79e-07!312;UBERON:0004733!4.92e-07!12;UBERON:0002028!4.92e-07!12;UBERON:0007277!4.92e-07!12;UBERON:0002022!8.21e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0005178;2.32e-07;34!UBERON:0000072;2.32e-07;37!UBERON:0005181;2.32e-07;35!UBERON:0002224;2.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.202612753855184,0.781078098613847,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.263091094251396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21084245099435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p38@RAPGEF2 | |||
}} |
Revision as of 03:47, 22 January 2014
Short description: | p38@RAPGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_38_at_RAPGEF2_5end |
Coexpression cluster: | C185_small_adrenal_gastric_Mesenchymal_acute_HES3GFP_testis |
Association with transcript: | 284bp_to_NM_014247, uc003iqg.3_5end |
EntrezGene: | RAPGEF2 |
HGNC: | 16854 |
UniProt: | Q9Y4G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-50 | 4 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |