FFCP PHASE1:Hg19::chr7:100450328..100450398,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56996 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17435 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BXP2,C9JBD8,C9J0I5,F8WEK3,F5H8C2,Q9H7I6 | |||
|association_with_transcript=0bp_to_ENST00000275729,ENST00000354161,ENST00000415287,ENST00000416675,ENST00000418037,ENST00000428758,ENST00000448342,ENST00000462106,ENST00000540482,NM_020246,uc003uwo.1,uc003uwp.2,uc003uwq.2_5end | |||
|coexpression_cluster_id=C3790 | |||
|description=CAGE_peak_1_at_SLC12A9_5end | |||
|id=chr7:100450328..100450398,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.48e-14!65;CL:0002194!1.15e-13!63;CL:0000576!1.15e-13!63;CL:0000040!1.15e-13!63;CL:0000559!1.15e-13!63;CL:0002087!1.64e-13!119;CL:0000766!2.66e-13!76;CL:0000738!3.10e-13!140;CL:0002057!2.86e-11!42;CL:0000557!1.25e-10!71;CL:0002031!3.79e-09!124;CL:0000860!9.41e-09!45;CL:0000839!1.82e-08!70;CL:0000037!4.69e-08!172;CL:0000566!4.69e-08!172;CL:0000988!4.73e-08!182;CL:0002032!4.58e-07!165;CL:0000837!4.58e-07!165;CL:0002393!6.75e-07!9;CL:0002397!6.75e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;4.67e-09;48!CL:0000473;5.13e-08;39!CL:0000234;5.13e-08;39!CL:0000766;7.52e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.26e-18,61;CL:0002194,2.64e-17,59;CL:0000576,2.64e-17,59;CL:0000040,2.64e-17,59;CL:0000559,2.64e-17,59;CL:0000766,1.82e-16,72;CL:0002087,6.03e-16,115;CL:0000738,1.98e-15,136;CL:0000473,4.49e-14,48;CL:0000234,4.49e-14,48;CL:0000557,1.71e-13,67;CL:0000860,2.86e-11,42;CL:0002057,2.86e-11,42;CL:0002031,5.14e-11,120;CL:0000839,5.87e-11,66;CL:0000037,1.66e-09,168;CL:0000988,2.53e-09,177;CL:0002032,1.98e-08,161;CL:0000837,1.98e-08,161;CL:0000763,1.59e-07,108;CL:0000049,1.59e-07,108;CL:0002393,6.75e-07,9;CL:0002397,6.75e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.60e-16!216;UBERON:0002193!9.85e-15!112;UBERON:0002390!2.08e-14!102;UBERON:0003061!2.08e-14!102;UBERON:0002371!5.77e-10!80;UBERON:0001474!3.01e-09!86;UBERON:0002405!1.00e-08!115;UBERON:0004765!7.91e-08!101;UBERON:0001434!7.91e-08!101;UBERON:0002204!4.76e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.66e-19,203;UBERON:0002193,2.14e-17,108;UBERON:0002390,3.47e-17,98;UBERON:0003061,3.47e-17,98;UBERON:0002405,1.18e-13,93;UBERON:0004765,1.17e-12,90;UBERON:0002371,1.64e-12,76;UBERON:0001474,1.43e-11,82;UBERON:0001434,2.44e-10,100;UBERON:0002204,9.61e-09,167;UBERON:0000926,2.66e-08,315;UBERON:0004120,2.66e-08,315;UBERON:0006603,2.66e-08,315 | |||
|phase1_expression=11.8090946525862,12.631930909568,8.45726424575827,13.009528785907,12.5149106439641,9.59572376510406,7.59899634504932,13.8978372153903,19.0665508585882,9.33788958705734,72.5713214691325,25.1207577949698,28.486833648673,24.3819715331292,21.8722267980424,24.2037052722639,22.2996975368871,14.6062018077475,17.5655807564582,13.5433163884467,23.4600794930891,16.6131002383387,10.8769675109802,10.5393307306121,9.0390700508258,6.64796630007176,5.82914185094615,5.66717625458491,29.1089564868189,22.6459344877355,36.69142122591,24.824373060931,27.1085326900425,13.3111443660044,9.83833447369831,7.67713855432076,16.4416246027514,32.1317336948489,36.6996338870359,45.7892937210447,30.6764199708696,22.6725566213286,20.6060454107349,33.5869931580794,21.1610528465733,24.7435742411573,22.3131875429457,10.2791972005456,17.962969511916,18.1246207162955,20.4928565223281,18.2091317014211,24.4769433322999,21.3009945582663,32.502356782642,29.3658049686463,14.191119803008,12.3597916444797,21.7319563583341,11.2325159476633,17.2621023965741,26.0582527147506,19.9463657621632,20.0325632750366,17.412554317715,11.9150897185139,13.0792672289071,26.8836071824715,21.3807996552283,23.4563952281526,13.3187890579341,18.7821594353658,13.607882659958,54.0813532958571,66.7577501890237,41.0930945196417,59.5341745076424,65.6273021717383,40.3421222609671,44.747000767376,63.6533367037088,44.2047252110414,10.5597746676794,18.5687127829125,17.7901850772711,31.151306247355,24.0237592221607,24.7143549180428,25.1197051658248,27.6675588815256,18.7840279806118,21.1405388173538,23.318666915639,5.28685314316103,10.0891541336676,12.9058201539788,16.9170402297896,16.1134412727158,18.7097364089553,23.0717363639136,15.9701910650459,15.1503297835115,23.3792074089494,17.6028521878574,20.9170194307134,21.2672538800276,18.9562704635511,19.5979719180283,18.5984867010626,19.5681106478375,21.5553013872962,24.9230653732145,22.3912710374711,19.2629396224593,14.6349733326968,18.4694228597033,24.142891096921,21.9921565108883,12.6509846009751,20.0696211024181,16.2770863464105,19.0090408889675,27.2540965530769,19.1979916731628,23.7368380449457,24.8616114646218,18.8859439291841,12.9028315663829,20.058014683763,21.578836178537,2.43806866313962,16.7675214925909,14.1927443646319,12.6503703334598,19.5521785147997,17.6712753132205,6.36228757640879,13.6257763684738,7.46825055596136,7.53879951372717,8.25646985515385,20.3672462398943,21.8577172975525,18.168437696437,48.3575616545478,47.0150290708022,53.5820580891027,30.5267999110838,25.1677760743256,25.2591100904104,10.7331699978021,17.2046919021225,21.5227110996708,14.1326985481002,33.5599548967925,22.5596794390855,14.6296476575767,13.1792547176358,11.028754143288,9.70689777017544,25.3782469778763,32.691700545896,30.9958813086175,15.0741862941806,30.7853940195069,10.6266676658055,9.20570427767296,8.22063807528252,26.0638283692002,30.3765011061801,15.9385517219454,61.9367961949497,69.8004475466986,14.3911037207036,5.4666914686485,10.1304409331664,19.1993312179167,35.2809043521041,8.86670955495893,16.8203280042692,18.1473292740498,22.9400820027959,6.84664277879486,13.0669351907597,11.4423332179421,14.2275981986236,17.2852777344,8.66989297785048,15.2958437646857,17.6846264678779,21.2217126383558,7.86811140913225,9.06488488461537,9.97200727585964,12.2492502752936,16.0912955678416,14.4656093646072,14.2560342873846,14.0942149688777,8.19145225744224,33.7750526653632,9.09015015351958,5.75545191411035,6.09541054065202,10.0964852802593,16.243853177348,13.2209491837805,13.0447010634024,26.7290557176404,13.8812302732069,8.05341224406335,46.5141198930824,9.17167510222106,24.4758513043348,15.2615822191904,30.3797398034279,9.25651549031387,19.4374006167968,11.3221375330028,8.24394889775941,35.8559688441781,10.1759619209917,14.243089754081,16.8136942252068,15.5465288736776,16.6346665325622,12.6852654374779,14.1806852103989,10.1088730296481,8.08556229119889,12.6160425437814,12.774207567654,18.7739438795779,30.8755650332585,29.0083334840209,23.218396401599,26.7095408217747,6.98010120235079,6.74338760312407,4.33819853790268,6.83822630940842,7.40790109914181,7.1181185733329,7.01122802432855,5.49420102350969,5.38646019724947,23.6209745479887,25.2435192846202,14.8166644079304,24.9914809355421,12.6755034821831,21.6221987669078,11.2250082269467,3.97316789473185,15.0045895022599,11.6666111002997,33.3640867642222,23.6043681841001,13.5714112755702,13.2401476576697,9.12263254868909,27.038304417269,14.4331342025273,12.056762117408,9.62751292733738,15.4472099104349,26.8531597294434,17.503382005583,37.9298111020452,39.4903634563641,36.9325509131096,21.0603838625314,30.618019431478,13.1227367581488,15.6223379224939,13.6104093352691,8.68717670217628,11.0440896635306,16.4854552041041,0,0,0.621984346622316,2.45003920808834,0.88369703398466,12.1280978098043,30.9410624702205,43.3704554677174,37.6359381249951,22.6220483947312,26.4301890902647,23.723593908338,11.5495016875722,10.4630416519987,9.5339771567235,9.82465039759111,107.296933755565,20.28726606134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| |||
|short_description=p1@SLC12A9 | |||
}} |
Revision as of 18:21, 22 January 2014
Short description: | p1@SLC12A9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC12A9_5end |
Coexpression cluster: | C3790_Neutrophils_Eosinophils_Mesenchymal_Whole_Alveolar_blood_CD14 |
Association with transcript: | 0bp_to_ENST00000275729, ENST00000354161, ENST00000415287, ENST00000416675, ENST00000418037, ENST00000428758, ENST00000448342, ENST00000462106, ENST00000540482, NM_020246, uc003uwo.1, uc003uwp.2, uc003uwq.2_5end |
EntrezGene: | SLC12A9 |
HGNC: | 17435 |
UniProt: | Q9BXP2C9JBD8C9J0I5F8WEK3F5H8C2Q9H7I6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.26e-18 | 61 |
monopoietic cell | 2.64e-17 | 59 |
monocyte | 2.64e-17 | 59 |
monoblast | 2.64e-17 | 59 |
promonocyte | 2.64e-17 | 59 |
myeloid leukocyte | 1.82e-16 | 72 |
nongranular leukocyte | 6.03e-16 | 115 |
leukocyte | 1.98e-15 | 136 |
defensive cell | 4.49e-14 | 48 |
phagocyte | 4.49e-14 | 48 |
granulocyte monocyte progenitor cell | 1.71e-13 | 67 |
classical monocyte | 2.86e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.86e-11 | 42 |
hematopoietic lineage restricted progenitor cell | 5.14e-11 | 120 |
myeloid lineage restricted progenitor cell | 5.87e-11 | 66 |
hematopoietic stem cell | 1.66e-09 | 168 |
hematopoietic cell | 2.53e-09 | 177 |
hematopoietic oligopotent progenitor cell | 1.98e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.98e-08 | 161 |
myeloid cell | 1.59e-07 | 108 |
common myeloid progenitor | 1.59e-07 | 108 |
intermediate monocyte | 6.75e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.75e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.66e-19 | 203 |
hemolymphoid system | 2.14e-17 | 108 |
hematopoietic system | 3.47e-17 | 98 |
blood island | 3.47e-17 | 98 |
immune system | 1.18e-13 | 93 |
skeletal element | 1.17e-12 | 90 |
bone marrow | 1.64e-12 | 76 |
bone element | 1.43e-11 | 82 |
skeletal system | 2.44e-10 | 100 |
musculoskeletal system | 9.61e-09 | 167 |
mesoderm | 2.66e-08 | 315 |
mesoderm-derived structure | 2.66e-08 | 315 |
presumptive mesoderm | 2.66e-08 | 315 |