FFCP PHASE1:Mm9::chr8:85689401..85689422,+: Difference between revisions
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{{FFCP|EntrezGene=71310|HGNC=|MCL_coexpression_id=13|UniProt=Q3UYK3,E9Q645|association_with_transcript=150bp_to_ENSMUST00000034145,ENSMUST00000168190,NM_001111304,NM_027758,uc009mju.2,uc009mjv.2_5end|description=CAGE_peak_2_at_Tbc1d9_5end|id=chr8:85689401..85689422,+|ontology_enrichment_celltype=CL:0000117!2.68e-13!23;CL:0000337!2.68e-13!23;CL:0000540!8.27e-09!33;CL:0000047!8.27e-09!33;CL:0000031!8.27e-09!33;CL:0000404!8.27e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.46e-14,23;CL:0000337,4.46e-14,23;CL:0000540,3.24e-09,33;CL:0000047,3.24e-09,33;CL:0000031,3.24e-09,33;CL:0000404,3.24e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.10e-16!34;UBERON:0000033!3.78e-16!63;UBERON:0001049!4.37e-16!52;UBERON:0005068!4.37e-16!52;UBERON:0006241!4.37e-16!52;UBERON:0007135!4.37e-16!52;UBERON:0000955!3.11e-15!50;UBERON:0006238!3.11e-15!50;UBERON:0001017!5.95e-15!73;UBERON:0005743!5.95e-15!73;UBERON:0002616!1.39e-14!49;UBERON:0000073!2.11e-14!75;UBERON:0001016!2.11e-14!75;UBERON:0002346!4.02e-14!71;UBERON:0003075!4.02e-14!71;UBERON:0007284!4.02e-14!71;UBERON:0002791!1.34e-13!29;UBERON:0003528!1.34e-13!29;UBERON:0001893!1.34e-13!29;UBERON:0003056!6.57e-13!49;UBERON:0003080!1.29e-12!40;UBERON:0002780!3.74e-12!39;UBERON:0001890!3.74e-12!39;UBERON:0006240!3.74e-12!39;UBERON:0004121!9.54e-12!102;UBERON:0000924!9.54e-12!102;UBERON:0006601!9.54e-12!102;UBERON:0000956!3.14e-09!21;UBERON:0001869!3.14e-09!21;UBERON:0000203!3.14e-09!21;UBERON:0000468!5.67e-08!333;UBERON:0007811!7.37e-08!86;UBERON:0000064!8.20e-08!99;UBERON:0002619!2.66e-07!17;UBERON:0000922!6.44e-07!328;UBERON:0000153!7.51e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.11e-17,54;UBERON:0002020,1.28e-16,34;UBERON:0002346,1.50e-16,64;UBERON:0003075,1.50e-16,64;UBERON:0007284,1.50e-16,64;UBERON:0001049,3.15e-16,52;UBERON:0005068,3.15e-16,52;UBERON:0006241,3.15e-16,52;UBERON:0007135,3.15e-16,52;UBERON:0001017,2.50e-15,73;UBERON:0001016,9.90e-15,75;UBERON:0010371,1.92e-14,73;UBERON:0003528,7.98e-14,29;UBERON:0002791,7.98e-14,29;UBERON:0001893,7.98e-14,29;UBERON:0000955,1.12e-13,47;UBERON:0006238,1.12e-13,47;UBERON:0004121,4.80e-13,95;UBERON:0000924,4.80e-13,95;UBERON:0006601,4.80e-13,95;UBERON:0002616,5.10e-13,46;UBERON:0003056,1.09e-12,49;UBERON:0003080,2.65e-12,40;UBERON:0002780,8.06e-12,39;UBERON:0001890,8.06e-12,39;UBERON:0006240,8.06e-12,39;UBERON:0000956,3.32e-09,21;UBERON:0001869,3.32e-09,21;UBERON:0000203,3.32e-09,21;UBERON:0010314,2.54e-08,92;UBERON:0002619,3.56e-07,17|phase1_expression=4.64431656603902,8.02643437570531,6.3699893514535,7.56160528267075,12.0214975187123,5.20425742926858,3.50418960893289,0,0,0,0.171217968225505,0,0,0.0874204024189974,1.33243904726265,1.01237633694913,0,2.83915948822414,2.19383093769182,3.39511721438424,1.44573593256819,0,0,2.55987876469451,2.75291137280604,4.01962374880514,4.30761996159075,3.66301095566011,1.52018735565099,1.76421090831952,1.10865255327652,0,0,0,4.62162591602039,2.32728503501889,2.85837098767317,0,0,0,0,0,0,0.503587271902309,1.01376931219515,0.550640256485045,0,1.09012578190223,0.659058548203415,0.777719596297134,0.279972843250725,0,0,0,0,0.514518872071894,0.573066879877513,0,10.7227724255587,6.87688273053643,2.53532561402472,0,0,3.5995988691256,3.9554654502679,3.5524005747305,1.49800055259202,1.53687322128622,5.18448061542388,5.40023753326763,4.6271491497304,6.28432165688368,3.97563373712904,4.89963196859816,5.271500906003,8.27296907949019,14.3150645299205,5.10749352340751,4.45458946443106,8.04506355154182,5.58074625974699,4.68822033501084,6.42120897703176,7.31591393041184,6.41752640662602,5.00868595305235,5.26775218956681,8.01517617048792,1.59025005999687,0.453429360640713,1.15945795480671,0.860423876981386,0,0,0,0,0.702222100658759,0,0,0.35333957451034,6.33795388995062,0,0,0,2.16491041011214,0.760079596425296,1.51657333504435,0.68510327831436,2.84831672011889,2.07818994690755,1.38788261412909,0.304465478312141,0.230615497256059,1.05505848386836,1.76383060703557,0.502666365318702,0.494389935468748,0.722996784599558,1.76922110389975,0.161766849947409,0.662524555381181,0.969750506270444,1.86391761218122,5.27005434620785,3.56059401582874,2.04365644166873,0,0,0.127070227073065,4.94309110035915,3.20250421973039,10.0523481690292,6.08385120672968,7.16003280524926,2.90903262383384,3.24482526135515,2.54598409625791,1.99051152976149,4.54900965180614,1.05220927943237,1.95180664444056,2.06911893990126,2.16074555766419,1.20563854268572,1.83698547708585,3.71529788826064,3.46696380870997,1.55222022443409,0.646703978798527,0.567318240503458,0.527853372491847,0,1.11218899690239,2.43776516565517,1.23469281844766,0.59710280045548,0,0,0.284163499395593,1.65700618028402,0.234526059981096,0.720248245844059,0.710234206755631,1.18058539048442,1.07986979021165,0.465067889500816,0.536546802799238,0.350296027101508,0.329119699826961,0.820837320395476,0.648550476366846,0.438599962275997,0.658650345873152,0.939444931322602,5.04695876553905,6.174276742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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71310 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UYK3,uniprot:E9Q645 | |||
|association_with_transcript=150bp_to_ENSMUST00000034145,ENSMUST00000168190,NM_001111304,NM_027758,uc009mju.2,uc009mjv.2_5end | |||
|cluster_id=chr8:85689401..85689422,+ | |||
|description=CAGE_peak_2_at_Tbc1d9_5end | |||
|id=chr8:85689401..85689422,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.68e-13!23;CL:0000337!2.68e-13!23;CL:0000540!8.27e-09!33;CL:0000047!8.27e-09!33;CL:0000031!8.27e-09!33;CL:0000404!8.27e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.46e-14,23;CL:0000337,4.46e-14,23;CL:0000540,3.24e-09,33;CL:0000047,3.24e-09,33;CL:0000031,3.24e-09,33;CL:0000404,3.24e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.10e-16!34;UBERON:0000033!3.78e-16!63;UBERON:0001049!4.37e-16!52;UBERON:0005068!4.37e-16!52;UBERON:0006241!4.37e-16!52;UBERON:0007135!4.37e-16!52;UBERON:0000955!3.11e-15!50;UBERON:0006238!3.11e-15!50;UBERON:0001017!5.95e-15!73;UBERON:0005743!5.95e-15!73;UBERON:0002616!1.39e-14!49;UBERON:0000073!2.11e-14!75;UBERON:0001016!2.11e-14!75;UBERON:0002346!4.02e-14!71;UBERON:0003075!4.02e-14!71;UBERON:0007284!4.02e-14!71;UBERON:0002791!1.34e-13!29;UBERON:0003528!1.34e-13!29;UBERON:0001893!1.34e-13!29;UBERON:0003056!6.57e-13!49;UBERON:0003080!1.29e-12!40;UBERON:0002780!3.74e-12!39;UBERON:0001890!3.74e-12!39;UBERON:0006240!3.74e-12!39;UBERON:0004121!9.54e-12!102;UBERON:0000924!9.54e-12!102;UBERON:0006601!9.54e-12!102;UBERON:0000956!3.14e-09!21;UBERON:0001869!3.14e-09!21;UBERON:0000203!3.14e-09!21;UBERON:0000468!5.67e-08!333;UBERON:0007811!7.37e-08!86;UBERON:0000064!8.20e-08!99;UBERON:0002619!2.66e-07!17;UBERON:0000922!6.44e-07!328;UBERON:0000153!7.51e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.11e-17,54;UBERON:0002020,1.28e-16,34;UBERON:0002346,1.50e-16,64;UBERON:0003075,1.50e-16,64;UBERON:0007284,1.50e-16,64;UBERON:0001049,3.15e-16,52;UBERON:0005068,3.15e-16,52;UBERON:0006241,3.15e-16,52;UBERON:0007135,3.15e-16,52;UBERON:0001017,2.50e-15,73;UBERON:0001016,9.90e-15,75;UBERON:0010371,1.92e-14,73;UBERON:0003528,7.98e-14,29;UBERON:0002791,7.98e-14,29;UBERON:0001893,7.98e-14,29;UBERON:0000955,1.12e-13,47;UBERON:0006238,1.12e-13,47;UBERON:0004121,4.80e-13,95;UBERON:0000924,4.80e-13,95;UBERON:0006601,4.80e-13,95;UBERON:0002616,5.10e-13,46;UBERON:0003056,1.09e-12,49;UBERON:0003080,2.65e-12,40;UBERON:0002780,8.06e-12,39;UBERON:0001890,8.06e-12,39;UBERON:0006240,8.06e-12,39;UBERON:0000956,3.32e-09,21;UBERON:0001869,3.32e-09,21;UBERON:0000203,3.32e-09,21;UBERON:0010314,2.54e-08,92;UBERON:0002619,3.56e-07,17 | |||
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| |||
|short_description=p2@Tbc1d9 | |||
}} |
Revision as of 04:34, 4 August 2015
Short description: | p2@Tbc1d9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tbc1d9_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 150bp_to_ENSMUST00000034145, ENSMUST00000168190, NM_001111304, NM_027758, uc009mju.2, uc009mjv.2_5end |
EntrezGene: | 71310 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.46e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.46e-14 | 23 |
neuron | 3.24e-09 | 33 |
neuronal stem cell | 3.24e-09 | 33 |
neuroblast | 3.24e-09 | 33 |
electrically signaling cell | 3.24e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.11e-17 | 54 |
gray matter | 1.28e-16 | 34 |
neurectoderm | 1.50e-16 | 64 |
neural plate | 1.50e-16 | 64 |
presumptive neural plate | 1.50e-16 | 64 |
neural tube | 3.15e-16 | 52 |
neural rod | 3.15e-16 | 52 |
future spinal cord | 3.15e-16 | 52 |
neural keel | 3.15e-16 | 52 |
central nervous system | 2.50e-15 | 73 |
nervous system | 9.90e-15 | 75 |
ecto-epithelium | 1.92e-14 | 73 |
brain grey matter | 7.98e-14 | 29 |
regional part of telencephalon | 7.98e-14 | 29 |
telencephalon | 7.98e-14 | 29 |
brain | 1.12e-13 | 47 |
future brain | 1.12e-13 | 47 |
ectoderm-derived structure | 4.80e-13 | 95 |
ectoderm | 4.80e-13 | 95 |
presumptive ectoderm | 4.80e-13 | 95 |
regional part of brain | 5.10e-13 | 46 |
pre-chordal neural plate | 1.09e-12 | 49 |
anterior neural tube | 2.65e-12 | 40 |
regional part of forebrain | 8.06e-12 | 39 |
forebrain | 8.06e-12 | 39 |
future forebrain | 8.06e-12 | 39 |
cerebral cortex | 3.32e-09 | 21 |
cerebral hemisphere | 3.32e-09 | 21 |
pallium | 3.32e-09 | 21 |
structure with developmental contribution from neural crest | 2.54e-08 | 92 |
regional part of cerebral cortex | 3.56e-07 | 17 |