FFCP PHASE1:Mm9::chr5:23181759..23181815,-: Difference between revisions
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{{FFCP|EntrezGene=20817|HGNC=|MCL_coexpression_id=797|UniProt=E9Q5S4,O08551|association_with_transcript=0bp_to_ENSMUST00000171956,uc008wqh.1,uc008wqj.1_5end|description=CAGE_peak_2_at_Srpk2_5end|id=chr5:23181759..23181815,-|ontology_enrichment_celltype=CL:0000540!2.12e-16!33;CL:0000047!2.12e-16!33;CL:0000031!2.12e-16!33;CL:0000404!2.12e-16!33;CL:0000393!4.05e-15!39;CL:0000211!4.05e-15!39;CL:0000221!3.28e-14!44;CL:0000133!3.28e-14!44;CL:0002319!7.94e-14!43;CL:0000117!1.59e-12!23;CL:0000337!1.59e-12!23;CL:0000055!2.50e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.12e-16,33;CL:0000047,2.12e-16,33;CL:0000031,2.12e-16,33;CL:0000404,2.12e-16,33;CL:0000393,4.05e-15,39;CL:0000211,4.05e-15,39;CL:0000221,3.27e-14,44;CL:0000133,3.27e-14,44;CL:0002319,7.94e-14,43;CL:0000117,1.59e-12,23;CL:0000337,1.59e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.93e-29!102;UBERON:0000924!3.93e-29!102;UBERON:0006601!3.93e-29!102;UBERON:0000073!1.92e-27!75;UBERON:0001016!1.92e-27!75;UBERON:0001017!4.39e-27!73;UBERON:0005743!4.39e-27!73;UBERON:0000033!1.77e-20!63;UBERON:0002346!1.74e-19!71;UBERON:0003075!1.74e-19!71;UBERON:0007284!1.74e-19!71;UBERON:0001049!2.17e-19!52;UBERON:0005068!2.17e-19!52;UBERON:0006241!2.17e-19!52;UBERON:0007135!2.17e-19!52;UBERON:0000955!4.72e-18!50;UBERON:0006238!4.72e-18!50;UBERON:0002616!1.02e-17!49;UBERON:0002020!2.19e-16!34;UBERON:0003056!2.90e-16!49;UBERON:0003080!4.32e-15!40;UBERON:0002780!1.49e-14!39;UBERON:0001890!1.49e-14!39;UBERON:0006240!1.49e-14!39;UBERON:0000153!2.56e-14!94;UBERON:0002791!1.97e-13!29;UBERON:0003528!1.97e-13!29;UBERON:0001893!1.97e-13!29;UBERON:0007811!1.68e-12!86;UBERON:0000956!1.22e-09!21;UBERON:0001869!1.22e-09!21;UBERON:0000203!1.22e-09!21;UBERON:0000468!3.31e-09!333;UBERON:0002619!4.96e-08!17;UBERON:0000922!5.84e-08!328;UBERON:0002021!4.88e-07!10;UBERON:0000411!4.88e-07!10;UBERON:0001950!4.88e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.28e-31,95;UBERON:0000924,2.28e-31,95;UBERON:0006601,2.28e-31,95;UBERON:0001016,1.92e-27,75;UBERON:0001017,4.39e-27,73;UBERON:0010371,2.78e-24,73;UBERON:0002346,7.07e-22,64;UBERON:0003075,7.07e-22,64;UBERON:0007284,7.07e-22,64;UBERON:0000073,8.90e-21,54;UBERON:0001049,2.17e-19,52;UBERON:0005068,2.17e-19,52;UBERON:0006241,2.17e-19,52;UBERON:0007135,2.17e-19,52;UBERON:0010314,1.12e-17,92;UBERON:0002020,2.19e-16,34;UBERON:0003056,2.90e-16,49;UBERON:0000955,3.90e-16,47;UBERON:0006238,3.90e-16,47;UBERON:0002616,8.27e-16,46;UBERON:0003080,4.32e-15,40;UBERON:0002780,1.49e-14,39;UBERON:0001890,1.49e-14,39;UBERON:0006240,1.49e-14,39;UBERON:0003528,1.97e-13,29;UBERON:0002791,1.97e-13,29;UBERON:0001893,1.97e-13,29;UBERON:0000956,1.22e-09,21;UBERON:0001869,1.22e-09,21;UBERON:0000203,1.22e-09,21;UBERON:0000922,3.98e-09,320;UBERON:0002619,4.96e-08,17;UBERON:0002021,4.88e-07,10;UBERON:0000411,4.88e-07,10;UBERON:0001950,4.88e-07,10|phase1_expression=26.7448574665006,0.697950815278722,0.909998478779072,0.60492842261366,0,6.71517087647559,4.20502753071946,3.48632973292256,4.78681655315667,7.0219357896598,1.02730780935303,1.67521533890206,3.25281386869291,4.28359971853087,2.6648780945253,2.22722794128809,1.39912375625629,1.57731082679119,1.37114433605739,2.97072756258621,35.292965412694,9.73051321768676,12.27639008953,1.59992422793407,2.98232065387321,0.57423196411502,2.15380998079537,1.939241094173,1.52018735565099,1.51218077855958,1.77384408524244,6.98533740805594,7.38077745101484,0,1.44425809875637,1.82858109894342,2.24586291888606,1.25559489221072,1.5626706890476,0,0,1.36609096991689,1.45653105909346,19.0104195143122,19.3629938629273,21.2914232507551,8.60630478782843,17.6600376668162,14.7189742432096,22.5538682926169,16.6583841734181,12.9377307928474,2.18117387875057,3.62681071005672,8.4023449785616,22.1243114990914,24.6418758347331,15.4701627683233,44.1049884673923,53.9570798857474,44.3681982454325,7.45457970552091,7.11435836888911,3.1496490104849,0,6.3943210345149,20.0732074047331,23.4373166246148,43.9643956187945,31.4563836312839,41.4340173862223,50.845875223877,49.4745531731614,39.5645281464302,36.9963518130392,28.4957823849107,56.1590993096882,69.3342245802569,69.430153031822,47.6109498706,45.1948959395904,54.174990537903,54.999050803272,43.3327209724394,51.1874130052314,73.0678891974696,58.3723891276322,54.9878365184637,20.4460721999597,39.1460681353149,6.95674772884027,2.58127163094416,5.439770669662,4.85732872474035,4.54843492213368,2.24013443548668,10.8142203501449,12.7822741933543,11.950156211732,9.54016851177919,36.9009759814903,23.0987659345772,91.7298862943925,99.5493384414664,14.9378818297738,13.1747130047051,12.6381111253696,14.9580882431969,13.7237078333001,13.0629082377046,15.26670875542,11.5696881758614,14.7593918243877,14.9215414147096,19.9900802130698,16.3366568728578,6.92145909656247,10.1219549843938,4.42305275974937,20.2208562434261,7.95029466457417,10.1823803158397,7.45567044872489,30.1564220921894,35.6059401582874,4.34276993854605,2.5161176146243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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20817 | |||
|HGNC= | |||
|MCL_coexpression_id=797 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q5S4,uniprot:O08551 | |||
|association_with_transcript=0bp_to_ENSMUST00000171956,uc008wqh.1,uc008wqj.1_5end | |||
|cluster_id=chr5:23181759..23181815,- | |||
|description=CAGE_peak_2_at_Srpk2_5end | |||
|id=chr5:23181759..23181815,- | |||
|ontology_enrichment_celltype=CL:0000540!2.12e-16!33;CL:0000047!2.12e-16!33;CL:0000031!2.12e-16!33;CL:0000404!2.12e-16!33;CL:0000393!4.05e-15!39;CL:0000211!4.05e-15!39;CL:0000221!3.28e-14!44;CL:0000133!3.28e-14!44;CL:0002319!7.94e-14!43;CL:0000117!1.59e-12!23;CL:0000337!1.59e-12!23;CL:0000055!2.50e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.12e-16,33;CL:0000047,2.12e-16,33;CL:0000031,2.12e-16,33;CL:0000404,2.12e-16,33;CL:0000393,4.05e-15,39;CL:0000211,4.05e-15,39;CL:0000221,3.27e-14,44;CL:0000133,3.27e-14,44;CL:0002319,7.94e-14,43;CL:0000117,1.59e-12,23;CL:0000337,1.59e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.93e-29!102;UBERON:0000924!3.93e-29!102;UBERON:0006601!3.93e-29!102;UBERON:0000073!1.92e-27!75;UBERON:0001016!1.92e-27!75;UBERON:0001017!4.39e-27!73;UBERON:0005743!4.39e-27!73;UBERON:0000033!1.77e-20!63;UBERON:0002346!1.74e-19!71;UBERON:0003075!1.74e-19!71;UBERON:0007284!1.74e-19!71;UBERON:0001049!2.17e-19!52;UBERON:0005068!2.17e-19!52;UBERON:0006241!2.17e-19!52;UBERON:0007135!2.17e-19!52;UBERON:0000955!4.72e-18!50;UBERON:0006238!4.72e-18!50;UBERON:0002616!1.02e-17!49;UBERON:0002020!2.19e-16!34;UBERON:0003056!2.90e-16!49;UBERON:0003080!4.32e-15!40;UBERON:0002780!1.49e-14!39;UBERON:0001890!1.49e-14!39;UBERON:0006240!1.49e-14!39;UBERON:0000153!2.56e-14!94;UBERON:0002791!1.97e-13!29;UBERON:0003528!1.97e-13!29;UBERON:0001893!1.97e-13!29;UBERON:0007811!1.68e-12!86;UBERON:0000956!1.22e-09!21;UBERON:0001869!1.22e-09!21;UBERON:0000203!1.22e-09!21;UBERON:0000468!3.31e-09!333;UBERON:0002619!4.96e-08!17;UBERON:0000922!5.84e-08!328;UBERON:0002021!4.88e-07!10;UBERON:0000411!4.88e-07!10;UBERON:0001950!4.88e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.28e-31,95;UBERON:0000924,2.28e-31,95;UBERON:0006601,2.28e-31,95;UBERON:0001016,1.92e-27,75;UBERON:0001017,4.39e-27,73;UBERON:0010371,2.78e-24,73;UBERON:0002346,7.07e-22,64;UBERON:0003075,7.07e-22,64;UBERON:0007284,7.07e-22,64;UBERON:0000073,8.90e-21,54;UBERON:0001049,2.17e-19,52;UBERON:0005068,2.17e-19,52;UBERON:0006241,2.17e-19,52;UBERON:0007135,2.17e-19,52;UBERON:0010314,1.12e-17,92;UBERON:0002020,2.19e-16,34;UBERON:0003056,2.90e-16,49;UBERON:0000955,3.90e-16,47;UBERON:0006238,3.90e-16,47;UBERON:0002616,8.27e-16,46;UBERON:0003080,4.32e-15,40;UBERON:0002780,1.49e-14,39;UBERON:0001890,1.49e-14,39;UBERON:0006240,1.49e-14,39;UBERON:0003528,1.97e-13,29;UBERON:0002791,1.97e-13,29;UBERON:0001893,1.97e-13,29;UBERON:0000956,1.22e-09,21;UBERON:0001869,1.22e-09,21;UBERON:0000203,1.22e-09,21;UBERON:0000922,3.98e-09,320;UBERON:0002619,4.96e-08,17;UBERON:0002021,4.88e-07,10;UBERON:0000411,4.88e-07,10;UBERON:0001950,4.88e-07,10 | |||
|phase1_expression=26.7448574665006,0.697950815278722,0.909998478779072,0.60492842261366,0,6.71517087647559,4.20502753071946,3.48632973292256,4.78681655315667,7.0219357896598,1.02730780935303,1.67521533890206,3.25281386869291,4.28359971853087,2.6648780945253,2.22722794128809,1.39912375625629,1.57731082679119,1.37114433605739,2.97072756258621,35.292965412694,9.73051321768676,12.27639008953,1.59992422793407,2.98232065387321,0.57423196411502,2.15380998079537,1.939241094173,1.52018735565099,1.51218077855958,1.77384408524244,6.98533740805594,7.38077745101484,0,1.44425809875637,1.82858109894342,2.24586291888606,1.25559489221072,1.5626706890476,0,0,1.36609096991689,1.45653105909346,19.0104195143122,19.3629938629273,21.2914232507551,8.60630478782843,17.6600376668162,14.7189742432096,22.5538682926169,16.6583841734181,12.9377307928474,2.18117387875057,3.62681071005672,8.4023449785616,22.1243114990914,24.6418758347331,15.4701627683233,44.1049884673923,53.9570798857474,44.3681982454325,7.45457970552091,7.11435836888911,3.1496490104849,0,6.3943210345149,20.0732074047331,23.4373166246148,43.9643956187945,31.4563836312839,41.4340173862223,50.845875223877,49.4745531731614,39.5645281464302,36.9963518130392,28.4957823849107,56.1590993096882,69.3342245802569,69.430153031822,47.6109498706,45.1948959395904,54.174990537903,54.999050803272,43.3327209724394,51.1874130052314,73.0678891974696,58.3723891276322,54.9878365184637,20.4460721999597,39.1460681353149,6.95674772884027,2.58127163094416,5.439770669662,4.85732872474035,4.54843492213368,2.24013443548668,10.8142203501449,12.7822741933543,11.950156211732,9.54016851177919,36.9009759814903,23.0987659345772,91.7298862943925,99.5493384414664,14.9378818297738,13.1747130047051,12.6381111253696,14.9580882431969,13.7237078333001,13.0629082377046,15.26670875542,11.5696881758614,14.7593918243877,14.9215414147096,19.9900802130698,16.3366568728578,6.92145909656247,10.1219549843938,4.42305275974937,20.2208562434261,7.95029466457417,10.1823803158397,7.45567044872489,30.1564220921894,35.6059401582874,4.34276993854605,2.51611761462433,2.39961092397363,2.79554499560742,51.0786080370445,31.5675415944852,39.7067752676652,48.1493366932606,46.0287823194595,53.4015274518069,45.1030711328366,18.9421216761588,8.70848794270651,10.867078612648,17.0457903268044,30.0578223243846,23.2201125477808,25.9289466919703,25.6198190320716,30.2082056231896,26.0070852178245,27.5483070205603,24.3181168494675,31.2573589752621,46.3309896411157,40.1168563093803,28.7146409480123,32.531528159395,24.0293994900295,22.4302528684658,28.8599686886815,1.40442637462647,2.05878325691772,1.70498099637356,23.1980865239762,20.4037672183554,18.7264543919455,22.2540051450098,22.6278866509514,20.8260602397961,19.7653853037847,23.3397859217669,19.8501082024188,19.4180622897907,12.8050621981694,12.2413902414242,8.91819923294527,7.90380415047782,10.1996878257883,35.3287113587734,50.2174508410908,1.98251269790279,2.3800550999719,25.1680135631576,25.5460339046482,18.5569144303814,16.7397325437374,14.2321948060717,11.7939888189787,3.79623249235609,9.22314146454461,8.79673230800943,8.35617182572834,9.74820435595601,6.29173586057955,3.24207074812041,3.18626037206988,19.9151296000736,21.5929688832387,19.1603150644237,22.8089487186752,18.6194387680921,24.5475369616115,18.8444880630287,11.3659813944294,12.55989822731,11.4759362447274,1.77871576252289,7.34118465150814,6.4864468387357,4.04751802292737,3.44862206360455,1.92941727801933,3.8193877767213,5.75392274901621,5.99900339067631,6.58947391651396,30.1913233707445,8.93138274404408,10.6092808858951,6.31447194867779,6.81710171383266,5.30687873499704,10.3461786493299,20.8440552947533,22.3262017725575,23.5945669227512,26.2853078083122,18.5931945760415,15.2347930167049,24.7819732779405,21.438379598442,19.4888926890922,25.9911272911704,12.2897486036803,10.3610989119537,12.43981903801,4.52373851817817,7.07077388964322,28.0305635620851,18.4877620024171,53.1422452859591,51.1042953542006,28.8525503862949,9.59389523376617,34.0748876969557,27.7211508450613,39.8533285805678,44.4481964191747,59.932843328164,86.3383418905939,27.5271277138928,37.4087498126479,42.6910800182245,30.8468463764935,23.1362338889478,17.8065603667255,21.3381916753185,17.9817434040064,10.619611067197,15.7807413500738,13.6045600634138,12.0707251043775,8.85905678642318,10.7602301780375,8.5281336745513,9.81541069589265,11.4079161083111,6.95280867458795,6.32511651449993,10.3135543248187,32.3417625466099,29.5300194211349,20.3093133538925,22.9340627483804,31.743901821967,21.7609957474526,25.6696472139309,11.8741330154694,12.2029288193129,18.85305430688,23.8170669899359,44.6841745471411,27.4489525383039,29.9152107643653,25.5456816166712,28.8887983551308,3.49777003955821,53.7733375830478,3.75915937755276,14.0343070214991,12.222838806401,3.01389531207506,2.7338845544205,2.0590035588587,4.24946074984638,3.07893195112048,4.42239916174156,7.63736494412091,22.1435195506795,25.0082944566024,18.3609079397062,20.4906530094179,18.7791804821713,18.0718224155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| |||
|short_description=p2@Srpk2 | |||
}} |
Revision as of 04:49, 4 August 2015
Short description: | p2@Srpk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Srpk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:797 |
Association with transcript: | 0bp_to_ENSMUST00000171956, uc008wqh.1, uc008wqj.1_5end |
EntrezGene: | 20817 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.12e-16 | 33 |
neuronal stem cell | 2.12e-16 | 33 |
neuroblast | 2.12e-16 | 33 |
electrically signaling cell | 2.12e-16 | 33 |
electrically responsive cell | 4.05e-15 | 39 |
electrically active cell | 4.05e-15 | 39 |
ectodermal cell | 3.27e-14 | 44 |
neurectodermal cell | 3.27e-14 | 44 |
neural cell | 7.94e-14 | 43 |
CNS neuron (sensu Vertebrata) | 1.59e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.59e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.28e-31 | 95 |
ectoderm | 2.28e-31 | 95 |
presumptive ectoderm | 2.28e-31 | 95 |
nervous system | 1.92e-27 | 75 |
central nervous system | 4.39e-27 | 73 |
ecto-epithelium | 2.78e-24 | 73 |
neurectoderm | 7.07e-22 | 64 |
neural plate | 7.07e-22 | 64 |
presumptive neural plate | 7.07e-22 | 64 |
regional part of nervous system | 8.90e-21 | 54 |
neural tube | 2.17e-19 | 52 |
neural rod | 2.17e-19 | 52 |
future spinal cord | 2.17e-19 | 52 |
neural keel | 2.17e-19 | 52 |
structure with developmental contribution from neural crest | 1.12e-17 | 92 |
gray matter | 2.19e-16 | 34 |
pre-chordal neural plate | 2.90e-16 | 49 |
brain | 3.90e-16 | 47 |
future brain | 3.90e-16 | 47 |
regional part of brain | 8.27e-16 | 46 |
anterior neural tube | 4.32e-15 | 40 |
regional part of forebrain | 1.49e-14 | 39 |
forebrain | 1.49e-14 | 39 |
future forebrain | 1.49e-14 | 39 |
brain grey matter | 1.97e-13 | 29 |
regional part of telencephalon | 1.97e-13 | 29 |
telencephalon | 1.97e-13 | 29 |
cerebral cortex | 1.22e-09 | 21 |
cerebral hemisphere | 1.22e-09 | 21 |
pallium | 1.22e-09 | 21 |
embryo | 3.98e-09 | 320 |
regional part of cerebral cortex | 4.96e-08 | 17 |
occipital lobe | 4.88e-07 | 10 |
visual cortex | 4.88e-07 | 10 |
neocortex | 4.88e-07 | 10 |