FFCP PHASE1:Mm9::chr3:89263219..89263243,+: Difference between revisions
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{{FFCP|EntrezGene=68603|HGNC=|MCL_coexpression_id=966|UniProt=D3YXP6|association_with_transcript=-9bp_to_ENSMUST00000107410_5end|description=CAGE_peak_4_at_Pmvk_5end|id=chr3:89263219..89263243,+|ontology_enrichment_celltype=CL:0000221!2.23e-15!44;CL:0000133!2.23e-15!44;CL:0002319!5.02e-15!43;CL:0000117!8.19e-14!23;CL:0000337!8.19e-14!23;CL:0000540!1.48e-13!33;CL:0000047!1.48e-13!33;CL:0000031!1.48e-13!33;CL:0000404!1.48e-13!33;CL:0000055!2.05e-11!50;CL:0000393!1.64e-10!39;CL:0000211!1.64e-10!39;CL:0002321!1.27e-08!70;CL:0000220!1.27e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,5.96e-19,23;CL:0000337,5.96e-19,23;CL:0000221,1.99e-17,44;CL:0000133,1.99e-17,44;CL:0000540,2.13e-17,33;CL:0000047,2.13e-17,33;CL:0000031,2.13e-17,33;CL:0000404,2.13e-17,33;CL:0002319,6.48e-17,43;CL:0000393,4.17e-13,39;CL:0000211,4.17e-13,39;CL:0002321,6.17e-12,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-26!73;UBERON:0005743!1.72e-26!73;UBERON:0000073!7.07e-26!75;UBERON:0001016!7.07e-26!75;UBERON:0004121!7.28e-21!102;UBERON:0000924!7.28e-21!102;UBERON:0006601!7.28e-21!102;UBERON:0001049!2.60e-20!52;UBERON:0005068!2.60e-20!52;UBERON:0006241!2.60e-20!52;UBERON:0007135!2.60e-20!52;UBERON:0002346!9.32e-19!71;UBERON:0003075!9.32e-19!71;UBERON:0007284!9.32e-19!71;UBERON:0000955!1.13e-18!50;UBERON:0006238!1.13e-18!50;UBERON:0002616!3.04e-18!49;UBERON:0000033!7.97e-17!63;UBERON:0002020!9.37e-17!34;UBERON:0003080!3.40e-15!40;UBERON:0002780!8.03e-15!39;UBERON:0001890!8.03e-15!39;UBERON:0006240!8.03e-15!39;UBERON:0003056!2.25e-14!49;UBERON:0002791!2.26e-13!29;UBERON:0003528!2.26e-13!29;UBERON:0001893!2.26e-13!29;UBERON:0000956!1.17e-09!21;UBERON:0001869!1.17e-09!21;UBERON:0000203!1.17e-09!21;UBERON:0002619!9.91e-09!17;UBERON:0000025!4.72e-07!114;UBERON:0007811!6.03e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.62e-30,73;UBERON:0001016,8.53e-29,75;UBERON:0000073,8.21e-26,54;UBERON:0001049,8.40e-24,52;UBERON:0005068,8.40e-24,52;UBERON:0006241,8.40e-24,52;UBERON:0007135,8.40e-24,52;UBERON:0002020,2.55e-22,34;UBERON:0004121,8.40e-22,95;UBERON:0000924,8.40e-22,95;UBERON:0006601,8.40e-22,95;UBERON:0002346,2.77e-21,64;UBERON:0003075,2.77e-21,64;UBERON:0007284,2.77e-21,64;UBERON:0010371,1.77e-19,73;UBERON:0000955,4.07e-19,47;UBERON:0006238,4.07e-19,47;UBERON:0002616,1.63e-18,46;UBERON:0003080,1.32e-17,40;UBERON:0003528,2.60e-17,29;UBERON:0002791,2.60e-17,29;UBERON:0001893,2.60e-17,29;UBERON:0002780,4.65e-17,39;UBERON:0001890,4.65e-17,39;UBERON:0006240,4.65e-17,39;UBERON:0003056,6.67e-14,49;UBERON:0010314,2.85e-13,92;UBERON:0000956,4.81e-12,21;UBERON:0001869,4.81e-12,21;UBERON:0000203,4.81e-12,21;UBERON:0002619,1.41e-10,17;UBERON:0002021,3.13e-09,10;UBERON:0000411,3.13e-09,10;UBERON:0001950,3.13e-09,10;UBERON:0000025,2.12e-08,114;UBERON:0004111,6.53e-08,122;UBERON:0003076,8.06e-07,12;UBERON:0003057,8.06e-07,12;UBERON:0002240,8.59e-07,6;UBERON:0005174,8.59e-07,6;UBERON:0001137,8.59e-07,6|phase1_expression=1.60148847104794,0.348975407639361,0.909998478779072,0,0,0,0.700837921786577,0.129123323441576,0,0.234064526321993,0,0.0797721589953364,0,0,0.666219523631325,0.404950534779652,0,0,0,0,0.425216450755349,0.397163804803541,2.08959831311148,0.319984845586813,0.45881856213434,0.57423196411502,0,0.215471232685889,0.380046838912748,0.252030129759931,1.10865255327652,1.90509202037889,1.84519436275371,15.8481681015439,0,0,0,0.418531630736908,0,0.523523743973798,0,0,0,0.251793635951155,0.405507724878058,0.367093504323363,1.56478268869608,3.05235218932625,1.75748946187577,0.777719596297134,2.65974201088189,1.43752564364972,0,0,0,0,0.573066879877513,0.515672092277442,7.48570905180512,8.99284664762456,6.33831403506179,2.37191172448392,2.66788438833342,0,0,0,0.898800331555214,0.768436610643109,1.24427534770173,1.21505344498522,1.47227472945967,6.28432165688368,4.19650227808066,2.69479758272899,2.97120960156533,0.919218786610021,3.30347642998166,2.68143409978894,2.30409799884365,6.85808696197008,7.68496206260241,4.16730696445408,2.79182999001381,4.50210088025344,3.97275444219706,8.83885756421003,7.97281412474976,6.15118171223492,0.530083353332288,0.453429360640713,0,0,4.75979933595425,2.15881276655127,1.94932925234301,0.448026887097336,0.561777680527007,1.02258193546835,0.779358013808606,0.35333957451034,1.40843419776681,1.28326477414318,0,0,1.5154372870785,1.01343946190039,2.52762222507392,0.68510327831436,0,0,0.693941307064543,0.608930956624282,0.461230994512117,1.05505848386836,0.470354828542819,0.502666365318702,0.247194967734374,0.144599356919912,0,0.161766849947409,0,0.484875253135222,0,0.585561594023094,1.8850203613211,0.255457055208591,0,0,0.762421362438388,1.49790639404823,0.457500602818626,2.26177833803156,1.04294592115366,2.04572365864264,1.24672826735736,2.75810147215188,0.611036183101898,0.124406970610093,3.53811861807145,0,0.780722657776222,0.919608417733892,0.540186389416048,1.20563854268572,0.816437989815934,0.768682321709099,1.03071897015702,0.776110112217047,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68603 | |||
|HGNC= | |||
|MCL_coexpression_id=966 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YXP6 | |||
|association_with_transcript=-9bp_to_ENSMUST00000107410_5end | |||
|cluster_id=chr3:89263219..89263243,+ | |||
|description=CAGE_peak_4_at_Pmvk_5end | |||
|id=chr3:89263219..89263243,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.23e-15!44;CL:0000133!2.23e-15!44;CL:0002319!5.02e-15!43;CL:0000117!8.19e-14!23;CL:0000337!8.19e-14!23;CL:0000540!1.48e-13!33;CL:0000047!1.48e-13!33;CL:0000031!1.48e-13!33;CL:0000404!1.48e-13!33;CL:0000055!2.05e-11!50;CL:0000393!1.64e-10!39;CL:0000211!1.64e-10!39;CL:0002321!1.27e-08!70;CL:0000220!1.27e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.96e-19,23;CL:0000337,5.96e-19,23;CL:0000221,1.99e-17,44;CL:0000133,1.99e-17,44;CL:0000540,2.13e-17,33;CL:0000047,2.13e-17,33;CL:0000031,2.13e-17,33;CL:0000404,2.13e-17,33;CL:0002319,6.48e-17,43;CL:0000393,4.17e-13,39;CL:0000211,4.17e-13,39;CL:0002321,6.17e-12,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.72e-26!73;UBERON:0005743!1.72e-26!73;UBERON:0000073!7.07e-26!75;UBERON:0001016!7.07e-26!75;UBERON:0004121!7.28e-21!102;UBERON:0000924!7.28e-21!102;UBERON:0006601!7.28e-21!102;UBERON:0001049!2.60e-20!52;UBERON:0005068!2.60e-20!52;UBERON:0006241!2.60e-20!52;UBERON:0007135!2.60e-20!52;UBERON:0002346!9.32e-19!71;UBERON:0003075!9.32e-19!71;UBERON:0007284!9.32e-19!71;UBERON:0000955!1.13e-18!50;UBERON:0006238!1.13e-18!50;UBERON:0002616!3.04e-18!49;UBERON:0000033!7.97e-17!63;UBERON:0002020!9.37e-17!34;UBERON:0003080!3.40e-15!40;UBERON:0002780!8.03e-15!39;UBERON:0001890!8.03e-15!39;UBERON:0006240!8.03e-15!39;UBERON:0003056!2.25e-14!49;UBERON:0002791!2.26e-13!29;UBERON:0003528!2.26e-13!29;UBERON:0001893!2.26e-13!29;UBERON:0000956!1.17e-09!21;UBERON:0001869!1.17e-09!21;UBERON:0000203!1.17e-09!21;UBERON:0002619!9.91e-09!17;UBERON:0000025!4.72e-07!114;UBERON:0007811!6.03e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.62e-30,73;UBERON:0001016,8.53e-29,75;UBERON:0000073,8.21e-26,54;UBERON:0001049,8.40e-24,52;UBERON:0005068,8.40e-24,52;UBERON:0006241,8.40e-24,52;UBERON:0007135,8.40e-24,52;UBERON:0002020,2.55e-22,34;UBERON:0004121,8.40e-22,95;UBERON:0000924,8.40e-22,95;UBERON:0006601,8.40e-22,95;UBERON:0002346,2.77e-21,64;UBERON:0003075,2.77e-21,64;UBERON:0007284,2.77e-21,64;UBERON:0010371,1.77e-19,73;UBERON:0000955,4.07e-19,47;UBERON:0006238,4.07e-19,47;UBERON:0002616,1.63e-18,46;UBERON:0003080,1.32e-17,40;UBERON:0003528,2.60e-17,29;UBERON:0002791,2.60e-17,29;UBERON:0001893,2.60e-17,29;UBERON:0002780,4.65e-17,39;UBERON:0001890,4.65e-17,39;UBERON:0006240,4.65e-17,39;UBERON:0003056,6.67e-14,49;UBERON:0010314,2.85e-13,92;UBERON:0000956,4.81e-12,21;UBERON:0001869,4.81e-12,21;UBERON:0000203,4.81e-12,21;UBERON:0002619,1.41e-10,17;UBERON:0002021,3.13e-09,10;UBERON:0000411,3.13e-09,10;UBERON:0001950,3.13e-09,10;UBERON:0000025,2.12e-08,114;UBERON:0004111,6.53e-08,122;UBERON:0003076,8.06e-07,12;UBERON:0003057,8.06e-07,12;UBERON:0002240,8.59e-07,6;UBERON:0005174,8.59e-07,6;UBERON:0001137,8.59e-07,6 | |||
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| |||
|short_description=p4@Pmvk | |||
}} |
Revision as of 05:08, 4 August 2015
Short description: | p4@Pmvk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pmvk_5end |
Coexpression cluster: | MCL_coexpression_mm9:966 |
Association with transcript: | -9bp_to_ENSMUST00000107410_5end |
EntrezGene: | 68603 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.96e-19 | 23 |
neuroblast (sensu Vertebrata) | 5.96e-19 | 23 |
ectodermal cell | 1.99e-17 | 44 |
neurectodermal cell | 1.99e-17 | 44 |
neuron | 2.13e-17 | 33 |
neuronal stem cell | 2.13e-17 | 33 |
neuroblast | 2.13e-17 | 33 |
electrically signaling cell | 2.13e-17 | 33 |
neural cell | 6.48e-17 | 43 |
electrically responsive cell | 4.17e-13 | 39 |
electrically active cell | 4.17e-13 | 39 |
embryonic cell | 6.17e-12 | 70 |