FFCP PHASE1:Mm9::chr19:55972403..55972421,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=21416|HGNC=|MCL_coexpression_id=1732|UniProt=|association_with_transcript=-377bp_to_ENSMUST00000143334_5end|description=CAGE_peak_22_at_Tcf7l2_5end|id=chr19:55972403..55972421,+|ontology_enrichment_celltype=CL:0000117!8.18e-09!23;CL:0000337!8.18e-09!23;CL:0002613!1.85e-07!3;CL:0002610!3.38e-07!3;CL:0000120!4.05e-07!3|ontology_enrichment_celltype_v019_2=CL:0000117,4.28e-23,23;CL:0000337,4.28e-23,23;CL:0002613,1.11e-21,3;CL:0002610,8.52e-21,3;CL:0000120,1.58e-20,3;CL:0000540,7.25e-16,33;CL:0000047,7.25e-16,33;CL:0000031,7.25e-16,33;CL:0000404,7.25e-16,33;CL:0000393,2.67e-13,39;CL:0000211,2.67e-13,39;CL:0002319,5.53e-12,43;CL:0000221,1.08e-11,44;CL:0000133,1.08e-11,44;CL:0002321,5.24e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002420!2.42e-11!8;UBERON:0007245!2.42e-11!8;UBERON:0010009!2.42e-11!8;UBERON:0010011!2.42e-11!8;UBERON:0000454!2.42e-11!8;UBERON:0000369!2.60e-10!5;UBERON:0002435!2.60e-10!5;UBERON:0000204!2.60e-10!5;UBERON:0010082!2.60e-10!5;UBERON:0004684!3.38e-07!3;UBERON:0002275!3.38e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0004684,8.52e-21,3;UBERON:0002275,8.52e-21,3;UBERON:0000369,2.87e-13,5;UBERON:0002435,2.87e-13,5;UBERON:0000204,2.87e-13,5;UBERON:0010082,2.87e-13,5;UBERON:0001017,2.29e-12,73;UBERON:0001016,5.27e-12,75;UBERON:0000073,1.67e-09,54;UBERON:0004121,3.22e-09,95;UBERON:0000924,3.22e-09,95;UBERON:0006601,3.22e-09,95;UBERON:0002259,1.56e-08,1;UBERON:0002314,1.56e-08,1;UBERON:0004061,1.56e-08,1;UBERON:0006777,1.56e-08,1;UBERON:0005882,1.56e-08,1;UBERON:0002420,1.69e-08,8;UBERON:0007245,1.69e-08,8;UBERON:0010009,1.69e-08,8;UBERON:0010011,1.69e-08,8;UBERON:0000454,1.69e-08,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83243045203437,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,3.30347642998166,3.44755812830007,3.37934373163736,5.27545150920775,4.48289453651807,6.77187381723788,0.558365998002762,0,0.15279824777681,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5255048103643,0.915001205637253,0.125654352112864,0,0,5.61027720310812,2.59586020908412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0,0,0,0,0.243106717068294,0.419226325255965,0.551530525350042,1.11123363900808,0.412070114477788,0,0,0.25347929989024,0.754505365544305,0.280924522409647,0.448176066834085,0.229741875822453,0.476293691283074,0,0.192909220463705,0.412085900803307,0,0.685738504770831,0,0,0.290692833264657,0,0.25384382367503,0.365855945745545,0.526139422875686,0.135804113845862,0.561142271657738,0.118635018124174,0,0,0,0.385813221962283,0.749431733813838,0.467863216890817,0.214871054048298,0,0,0|short_description=p22@Tcf7l2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21416 | |||
|HGNC= | |||
|MCL_coexpression_id=1732 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-377bp_to_ENSMUST00000143334_5end | |||
|cluster_id=chr19:55972403..55972421,+ | |||
|description=CAGE_peak_22_at_Tcf7l2_5end | |||
|id=chr19:55972403..55972421,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.18e-09!23;CL:0000337!8.18e-09!23;CL:0002613!1.85e-07!3;CL:0002610!3.38e-07!3;CL:0000120!4.05e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.28e-23,23;CL:0000337,4.28e-23,23;CL:0002613,1.11e-21,3;CL:0002610,8.52e-21,3;CL:0000120,1.58e-20,3;CL:0000540,7.25e-16,33;CL:0000047,7.25e-16,33;CL:0000031,7.25e-16,33;CL:0000404,7.25e-16,33;CL:0000393,2.67e-13,39;CL:0000211,2.67e-13,39;CL:0002319,5.53e-12,43;CL:0000221,1.08e-11,44;CL:0000133,1.08e-11,44;CL:0002321,5.24e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002420!2.42e-11!8;UBERON:0007245!2.42e-11!8;UBERON:0010009!2.42e-11!8;UBERON:0010011!2.42e-11!8;UBERON:0000454!2.42e-11!8;UBERON:0000369!2.60e-10!5;UBERON:0002435!2.60e-10!5;UBERON:0000204!2.60e-10!5;UBERON:0010082!2.60e-10!5;UBERON:0004684!3.38e-07!3;UBERON:0002275!3.38e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,8.52e-21,3;UBERON:0002275,8.52e-21,3;UBERON:0000369,2.87e-13,5;UBERON:0002435,2.87e-13,5;UBERON:0000204,2.87e-13,5;UBERON:0010082,2.87e-13,5;UBERON:0001017,2.29e-12,73;UBERON:0001016,5.27e-12,75;UBERON:0000073,1.67e-09,54;UBERON:0004121,3.22e-09,95;UBERON:0000924,3.22e-09,95;UBERON:0006601,3.22e-09,95;UBERON:0002259,1.56e-08,1;UBERON:0002314,1.56e-08,1;UBERON:0004061,1.56e-08,1;UBERON:0006777,1.56e-08,1;UBERON:0005882,1.56e-08,1;UBERON:0002420,1.69e-08,8;UBERON:0007245,1.69e-08,8;UBERON:0010009,1.69e-08,8;UBERON:0010011,1.69e-08,8;UBERON:0000454,1.69e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83243045203437,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,3.30347642998166,3.44755812830007,3.37934373163736,5.27545150920775,4.48289453651807,6.77187381723788,0.558365998002762,0,0.15279824777681,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5255048103643,0.915001205637253,0.125654352112864,0,0,5.61027720310812,2.59586020908412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0,0,0,0,0.243106717068294,0.419226325255965,0.551530525350042,1.11123363900808,0.412070114477788,0,0,0.25347929989024,0.754505365544305,0.280924522409647,0.448176066834085,0.229741875822453,0.476293691283074,0,0.192909220463705,0.412085900803307,0,0.685738504770831,0,0,0.290692833264657,0,0.25384382367503,0.365855945745545,0.526139422875686,0.135804113845862,0.561142271657738,0.118635018124174,0,0,0,0.385813221962283,0.749431733813838,0.467863216890817,0.214871054048298,0,0,0 | |||
|short_description=p22@Tcf7l2 | |||
}} |
Revision as of 09:00, 4 August 2015
Short description: | p22@Tcf7l2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_22_at_Tcf7l2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1732 |
Association with transcript: | -377bp_to_ENSMUST00000143334_5end |
EntrezGene: | 21416 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.28e-23 | 23 |
neuroblast (sensu Vertebrata) | 4.28e-23 | 23 |
striatum neuron | 1.11e-21 | 3 |
raphe nuclei neuron | 8.52e-21 | 3 |
granule cell | 1.58e-20 | 3 |
neuron | 7.25e-16 | 33 |
neuronal stem cell | 7.25e-16 | 33 |
neuroblast | 7.25e-16 | 33 |
electrically signaling cell | 7.25e-16 | 33 |
electrically responsive cell | 2.67e-13 | 39 |
electrically active cell | 2.67e-13 | 39 |
neural cell | 5.53e-12 | 43 |
ectodermal cell | 1.08e-11 | 44 |
neurectodermal cell | 1.08e-11 | 44 |
embryonic cell | 5.24e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 8.52e-21 | 3 |
reticular formation | 8.52e-21 | 3 |
corpus striatum | 2.87e-13 | 5 |
striatum | 2.87e-13 | 5 |
ventral part of telencephalon | 2.87e-13 | 5 |
future corpus striatum | 2.87e-13 | 5 |
central nervous system | 2.29e-12 | 73 |
nervous system | 5.27e-12 | 75 |
regional part of nervous system | 1.67e-09 | 54 |
ectoderm-derived structure | 3.22e-09 | 95 |
ectoderm | 3.22e-09 | 95 |
presumptive ectoderm | 3.22e-09 | 95 |
corpora quadrigemina | 1.56e-08 | 1 |
midbrain tectum | 1.56e-08 | 1 |
neural tube mantle layer | 1.56e-08 | 1 |
tectal plate | 1.56e-08 | 1 |
neural tube alar plate | 1.56e-08 | 1 |
basal ganglion | 1.69e-08 | 8 |
nuclear complex of neuraxis | 1.69e-08 | 8 |
aggregate regional part of brain | 1.69e-08 | 8 |
collection of basal ganglia | 1.69e-08 | 8 |
cerebral subcortex | 1.69e-08 | 8 |