FFCP PHASE1:Mm9::chr19:55985049..55985067,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1732|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55985049..55985067,+|id=chr19:55985049..55985067,+|ontology_enrichment_celltype=CL:0000117!7.23e-08!23;CL:0000337!7.23e-08!23;CL:0002610!8.44e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,1.37e-27,3;CL:0002613,8.55e-27,3;CL:0000117,1.56e-18,23;CL:0000337,1.56e-18,23;CL:0000540,7.47e-13,33;CL:0000047,7.47e-13,33;CL:0000031,7.47e-13,33;CL:0000404,7.47e-13,33;CL:0000393,7.80e-11,39;CL:0000211,7.80e-11,39;CL:0002319,8.47e-10,43;CL:0000221,1.44e-09,44;CL:0000133,1.44e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002420!4.02e-08!8;UBERON:0007245!4.02e-08!8;UBERON:0010009!4.02e-08!8;UBERON:0010011!4.02e-08!8;UBERON:0000454!4.02e-08!8;UBERON:0004684!8.44e-07!3;UBERON:0002275!8.44e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.37e-27,3;UBERON:0002275,1.37e-27,3;UBERON:0000369,2.21e-16,5;UBERON:0002435,2.21e-16,5;UBERON:0000204,2.21e-16,5;UBERON:0010082,2.21e-16,5;UBERON:0000073,8.48e-13,54;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0002259,1.63e-10,1;UBERON:0002314,1.63e-10,1;UBERON:0004061,1.63e-10,1;UBERON:0006777,1.63e-10,1;UBERON:0005882,1.63e-10,1;UBERON:0002420,1.74e-10,8;UBERON:0007245,1.74e-10,8;UBERON:0010009,1.74e-10,8;UBERON:0010011,1.74e-10,8;UBERON:0000454,1.74e-10,8;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0003080,9.32e-08,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,1.90149421051854,0,0,0.449949858640699,0.988866362566974,0,0,0,0,0,0,0,0,0,0,0,5.50579404996943,3.95830748064082,3.99376986466233,2.37395317914349,3.65950574409639,3.12548022334056,0.558365998002762,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8819949888148,0.457500602818626,0,0,0.255715457330331,2.28566849015516,1.29793010454206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0.505394423527595,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.34461281373368,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0,0.214871054048298,0.191288332068843,0,0|short_description=p@chr19:55985049..55985067,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1732 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:55985049..55985067,+ | |||
|description=CAGE_peak_at_chr19:55985049..55985067,+ | |||
|id=chr19:55985049..55985067,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.23e-08!23;CL:0000337!7.23e-08!23;CL:0002610!8.44e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.37e-27,3;CL:0002613,8.55e-27,3;CL:0000117,1.56e-18,23;CL:0000337,1.56e-18,23;CL:0000540,7.47e-13,33;CL:0000047,7.47e-13,33;CL:0000031,7.47e-13,33;CL:0000404,7.47e-13,33;CL:0000393,7.80e-11,39;CL:0000211,7.80e-11,39;CL:0002319,8.47e-10,43;CL:0000221,1.44e-09,44;CL:0000133,1.44e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002420!4.02e-08!8;UBERON:0007245!4.02e-08!8;UBERON:0010009!4.02e-08!8;UBERON:0010011!4.02e-08!8;UBERON:0000454!4.02e-08!8;UBERON:0004684!8.44e-07!3;UBERON:0002275!8.44e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.37e-27,3;UBERON:0002275,1.37e-27,3;UBERON:0000369,2.21e-16,5;UBERON:0002435,2.21e-16,5;UBERON:0000204,2.21e-16,5;UBERON:0010082,2.21e-16,5;UBERON:0000073,8.48e-13,54;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0002259,1.63e-10,1;UBERON:0002314,1.63e-10,1;UBERON:0004061,1.63e-10,1;UBERON:0006777,1.63e-10,1;UBERON:0005882,1.63e-10,1;UBERON:0002420,1.74e-10,8;UBERON:0007245,1.74e-10,8;UBERON:0010009,1.74e-10,8;UBERON:0010011,1.74e-10,8;UBERON:0000454,1.74e-10,8;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0003080,9.32e-08,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,1.90149421051854,0,0,0.449949858640699,0.988866362566974,0,0,0,0,0,0,0,0,0,0,0,5.50579404996943,3.95830748064082,3.99376986466233,2.37395317914349,3.65950574409639,3.12548022334056,0.558365998002762,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8819949888148,0.457500602818626,0,0,0.255715457330331,2.28566849015516,1.29793010454206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0.505394423527595,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.34461281373368,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0.290692833264657,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p@chr19:55985049..55985067,+ | |||
}} |
Latest revision as of 09:02, 4 August 2015
Short description: | p@chr19:55985049..55985067, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55985049..55985067, + |
Coexpression cluster: | MCL_coexpression_mm9:1732 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.37e-27 | 3 |
striatum neuron | 8.55e-27 | 3 |
CNS neuron (sensu Vertebrata) | 1.56e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.56e-18 | 23 |
neuron | 7.47e-13 | 33 |
neuronal stem cell | 7.47e-13 | 33 |
neuroblast | 7.47e-13 | 33 |
electrically signaling cell | 7.47e-13 | 33 |
electrically responsive cell | 7.80e-11 | 39 |
electrically active cell | 7.80e-11 | 39 |
neural cell | 8.47e-10 | 43 |
ectodermal cell | 1.44e-09 | 44 |
neurectodermal cell | 1.44e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.37e-27 | 3 |
reticular formation | 1.37e-27 | 3 |
corpus striatum | 2.21e-16 | 5 |
striatum | 2.21e-16 | 5 |
ventral part of telencephalon | 2.21e-16 | 5 |
future corpus striatum | 2.21e-16 | 5 |
regional part of nervous system | 8.48e-13 | 54 |
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
corpora quadrigemina | 1.63e-10 | 1 |
midbrain tectum | 1.63e-10 | 1 |
neural tube mantle layer | 1.63e-10 | 1 |
tectal plate | 1.63e-10 | 1 |
neural tube alar plate | 1.63e-10 | 1 |
basal ganglion | 1.74e-10 | 8 |
nuclear complex of neuraxis | 1.74e-10 | 8 |
aggregate regional part of brain | 1.74e-10 | 8 |
collection of basal ganglia | 1.74e-10 | 8 |
cerebral subcortex | 1.74e-10 | 8 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
anterior neural tube | 9.32e-08 | 40 |