FFCP PHASE1:Mm9::chr7:25292331..25292421,+: Difference between revisions
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{{FFCP|EntrezGene=232969|HGNC=|MCL_coexpression_id=22|UniProt=E9PZE0|association_with_transcript=182bp_to_ENSMUST00000085998_5end|description=CAGE_peak_1_at_Zfp428_5end|id=chr7:25292331..25292421,+|ontology_enrichment_celltype=CL:0000221!6.94e-21!44;CL:0000133!6.94e-21!44;CL:0002319!1.66e-20!43;CL:0000540!3.01e-18!33;CL:0000047!3.01e-18!33;CL:0000031!3.01e-18!33;CL:0000404!3.01e-18!33;CL:0000055!2.86e-15!50;CL:0000117!4.73e-14!23;CL:0000337!4.73e-14!23;CL:0000393!8.33e-14!39;CL:0000211!8.33e-14!39|ontology_enrichment_celltype_v019_2=CL:0000221,6.14e-21,44;CL:0000133,6.14e-21,44;CL:0002319,1.47e-20,43;CL:0000540,2.70e-18,33;CL:0000047,2.70e-18,33;CL:0000031,2.70e-18,33;CL:0000404,2.70e-18,33;CL:0000117,4.37e-14,23;CL:0000337,4.37e-14,23;CL:0000393,7.71e-14,39;CL:0000211,7.71e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.30e-32!73;UBERON:0005743!6.30e-32!73;UBERON:0000073!4.76e-31!75;UBERON:0001016!4.76e-31!75;UBERON:0004121!3.76e-26!102;UBERON:0000924!3.76e-26!102;UBERON:0006601!3.76e-26!102;UBERON:0002346!5.40e-24!71;UBERON:0003075!5.40e-24!71;UBERON:0007284!5.40e-24!71;UBERON:0000033!3.55e-21!63;UBERON:0001049!3.68e-21!52;UBERON:0005068!3.68e-21!52;UBERON:0006241!3.68e-21!52;UBERON:0007135!3.68e-21!52;UBERON:0003056!3.14e-20!49;UBERON:0000955!3.63e-19!50;UBERON:0006238!3.63e-19!50;UBERON:0002020!5.34e-19!34;UBERON:0002616!9.39e-19!49;UBERON:0003080!2.77e-17!40;UBERON:0002780!5.49e-17!39;UBERON:0001890!5.49e-17!39;UBERON:0006240!5.49e-17!39;UBERON:0002791!1.41e-15!29;UBERON:0003528!1.41e-15!29;UBERON:0001893!1.41e-15!29;UBERON:0000153!3.01e-14!94;UBERON:0007811!6.86e-14!86;UBERON:0000956!1.42e-11!21;UBERON:0001869!1.42e-11!21;UBERON:0000203!1.42e-11!21;UBERON:0002619!2.05e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.19e-32,73;UBERON:0001016,3.95e-31,75;UBERON:0004121,2.55e-27,95;UBERON:0000924,2.55e-27,95;UBERON:0006601,2.55e-27,95;UBERON:0002346,4.41e-26,64;UBERON:0003075,4.41e-26,64;UBERON:0007284,4.41e-26,64;UBERON:0010314,2.18e-22,92;UBERON:0000073,2.85e-22,54;UBERON:0010371,7.06e-22,73;UBERON:0001049,3.25e-21,52;UBERON:0005068,3.25e-21,52;UBERON:0006241,3.25e-21,52;UBERON:0007135,3.25e-21,52;UBERON:0003056,2.79e-20,49;UBERON:0002020,4.78e-19,34;UBERON:0000955,2.55e-18,47;UBERON:0006238,2.55e-18,47;UBERON:0002616,6.53e-18,46;UBERON:0003080,2.50e-17,40;UBERON:0002780,4.98e-17,39;UBERON:0001890,4.98e-17,39;UBERON:0006240,4.98e-17,39;UBERON:0003528,1.29e-15,29;UBERON:0002791,1.29e-15,29;UBERON:0001893,1.29e-15,29;UBERON:0000956,1.34e-11,21;UBERON:0001869,1.34e-11,21;UBERON:0000203,1.34e-11,21;UBERON:0002619,1.95e-09,17|phase1_expression=18.4171174170513,0,0,0,0,0.671517087647559,1.40167584357315,1.03298658753261,1.267098499365,2.10658073689794,4.10923123741212,3.11111420081812,1.36960583944965,0.961624426608971,1.99865857089398,1.41732687172878,0,1.10411757875383,1.91960207048034,0.84877930359606,5.52781385981954,8.14185799847259,10.7091913546964,0.159992422793407,0.91763712426868,0,0,0.215471232685889,0.190023419456374,0.504060259519861,0.443461021310609,6.98533740805594,4.30545351309199,15.8481681015439,1.1554064790051,2.49351968037739,1.42918549383658,0,0,0.523523743973798,0,0,0,1.76255545165808,2.53442328048786,5.68994931701213,18.7773922643529,38.8084778357195,20.2111288115714,19.4429899074283,13.0187372111587,41.6882436658418,0.838913030288682,0,1.00828139742739,2.57259436035947,3.15186783932632,1.03134418455488,196.651599955529,188.320788620844,244.025090349879,12.876092218627,8.89294796111139,0,1.97773272513395,0,27.2636100571748,52.637907829053,42.5127410464758,52.382304072696,53.0018902605483,96.2643817440818,92.5439186587261,71.6571175407481,61.8203288067625,91.0026598743921,23.1243350098716,19.6638500651189,13.8245879930619,174.485558667046,158.731061650181,157.836751278698,20.1011759280994,24.7615548413939,21.697351184307,90.1563471549423,88.9823004994393,138.681187694024,3.86203585999239,4.38315048619356,0.869593466105033,0,0.679971333707751,1.61910957491345,0.649776417447669,0.448026887097336,2.10666630197628,2.21559419351475,5.45550609666024,4.24007489412408,20.281452447842,1.28326477414318,2.54805239706646,14.2213340630666,5.84525810730278,4.56047757855178,8.59391556525132,1.02765491747154,1.03575153458869,1.03909497345377,14.052311468057,14.3098774806706,8.30215790121811,7.68685466818375,6.46737889246376,1.38233250462643,0.247194967734374,1.15679485535929,1.76922110389975,3.558870698843,1.98757366614354,1.93950101254089,0,6.73395833126558,10.2628886338593,0.510914110417183,4.31334448221313,4.79922184794726,2.03312363316904,17.9748767285787,17.3850229071078,77.0261178451859,23.8139318663419,17.3886510984625,21.1943805450751,19.9556753573342,6.72139801412087,1.11966273549084,2.0217820674694,1.89397670297827,30.0578223243846,31.7264904118193,25.9289466919703,28.1818009352787,24.2209936978727,28.953700784376,32.139691523987,15.78090561508,23.0657752438141,17.775971535775,17.243210168067,15.7820927347854,13.0682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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:232969 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9PZE0 | |||
|association_with_transcript=182bp_to_ENSMUST00000085998_5end | |||
|cluster_id=chr7:25292331..25292421,+ | |||
|description=CAGE_peak_1_at_Zfp428_5end | |||
|id=chr7:25292331..25292421,+ | |||
|ontology_enrichment_celltype=CL:0000221!6.94e-21!44;CL:0000133!6.94e-21!44;CL:0002319!1.66e-20!43;CL:0000540!3.01e-18!33;CL:0000047!3.01e-18!33;CL:0000031!3.01e-18!33;CL:0000404!3.01e-18!33;CL:0000055!2.86e-15!50;CL:0000117!4.73e-14!23;CL:0000337!4.73e-14!23;CL:0000393!8.33e-14!39;CL:0000211!8.33e-14!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.14e-21,44;CL:0000133,6.14e-21,44;CL:0002319,1.47e-20,43;CL:0000540,2.70e-18,33;CL:0000047,2.70e-18,33;CL:0000031,2.70e-18,33;CL:0000404,2.70e-18,33;CL:0000117,4.37e-14,23;CL:0000337,4.37e-14,23;CL:0000393,7.71e-14,39;CL:0000211,7.71e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.30e-32!73;UBERON:0005743!6.30e-32!73;UBERON:0000073!4.76e-31!75;UBERON:0001016!4.76e-31!75;UBERON:0004121!3.76e-26!102;UBERON:0000924!3.76e-26!102;UBERON:0006601!3.76e-26!102;UBERON:0002346!5.40e-24!71;UBERON:0003075!5.40e-24!71;UBERON:0007284!5.40e-24!71;UBERON:0000033!3.55e-21!63;UBERON:0001049!3.68e-21!52;UBERON:0005068!3.68e-21!52;UBERON:0006241!3.68e-21!52;UBERON:0007135!3.68e-21!52;UBERON:0003056!3.14e-20!49;UBERON:0000955!3.63e-19!50;UBERON:0006238!3.63e-19!50;UBERON:0002020!5.34e-19!34;UBERON:0002616!9.39e-19!49;UBERON:0003080!2.77e-17!40;UBERON:0002780!5.49e-17!39;UBERON:0001890!5.49e-17!39;UBERON:0006240!5.49e-17!39;UBERON:0002791!1.41e-15!29;UBERON:0003528!1.41e-15!29;UBERON:0001893!1.41e-15!29;UBERON:0000153!3.01e-14!94;UBERON:0007811!6.86e-14!86;UBERON:0000956!1.42e-11!21;UBERON:0001869!1.42e-11!21;UBERON:0000203!1.42e-11!21;UBERON:0002619!2.05e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.19e-32,73;UBERON:0001016,3.95e-31,75;UBERON:0004121,2.55e-27,95;UBERON:0000924,2.55e-27,95;UBERON:0006601,2.55e-27,95;UBERON:0002346,4.41e-26,64;UBERON:0003075,4.41e-26,64;UBERON:0007284,4.41e-26,64;UBERON:0010314,2.18e-22,92;UBERON:0000073,2.85e-22,54;UBERON:0010371,7.06e-22,73;UBERON:0001049,3.25e-21,52;UBERON:0005068,3.25e-21,52;UBERON:0006241,3.25e-21,52;UBERON:0007135,3.25e-21,52;UBERON:0003056,2.79e-20,49;UBERON:0002020,4.78e-19,34;UBERON:0000955,2.55e-18,47;UBERON:0006238,2.55e-18,47;UBERON:0002616,6.53e-18,46;UBERON:0003080,2.50e-17,40;UBERON:0002780,4.98e-17,39;UBERON:0001890,4.98e-17,39;UBERON:0006240,4.98e-17,39;UBERON:0003528,1.29e-15,29;UBERON:0002791,1.29e-15,29;UBERON:0001893,1.29e-15,29;UBERON:0000956,1.34e-11,21;UBERON:0001869,1.34e-11,21;UBERON:0000203,1.34e-11,21;UBERON:0002619,1.95e-09,17 | |||
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| |||
|short_description=p1@Zfp428 | |||
}} |
Revision as of 19:16, 4 August 2015
Short description: | p1@Zfp428 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp428_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 182bp_to_ENSMUST00000085998_5end |
EntrezGene: | 232969 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.14e-21 | 44 |
neurectodermal cell | 6.14e-21 | 44 |
neural cell | 1.47e-20 | 43 |
neuron | 2.70e-18 | 33 |
neuronal stem cell | 2.70e-18 | 33 |
neuroblast | 2.70e-18 | 33 |
electrically signaling cell | 2.70e-18 | 33 |
CNS neuron (sensu Vertebrata) | 4.37e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.37e-14 | 23 |
electrically responsive cell | 7.71e-14 | 39 |
electrically active cell | 7.71e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.19e-32 | 73 |
nervous system | 3.95e-31 | 75 |
ectoderm-derived structure | 2.55e-27 | 95 |
ectoderm | 2.55e-27 | 95 |
presumptive ectoderm | 2.55e-27 | 95 |
neurectoderm | 4.41e-26 | 64 |
neural plate | 4.41e-26 | 64 |
presumptive neural plate | 4.41e-26 | 64 |
structure with developmental contribution from neural crest | 2.18e-22 | 92 |
regional part of nervous system | 2.85e-22 | 54 |
ecto-epithelium | 7.06e-22 | 73 |
neural tube | 3.25e-21 | 52 |
neural rod | 3.25e-21 | 52 |
future spinal cord | 3.25e-21 | 52 |
neural keel | 3.25e-21 | 52 |
pre-chordal neural plate | 2.79e-20 | 49 |
gray matter | 4.78e-19 | 34 |
brain | 2.55e-18 | 47 |
future brain | 2.55e-18 | 47 |
regional part of brain | 6.53e-18 | 46 |
anterior neural tube | 2.50e-17 | 40 |
regional part of forebrain | 4.98e-17 | 39 |
forebrain | 4.98e-17 | 39 |
future forebrain | 4.98e-17 | 39 |
brain grey matter | 1.29e-15 | 29 |
regional part of telencephalon | 1.29e-15 | 29 |
telencephalon | 1.29e-15 | 29 |
cerebral cortex | 1.34e-11 | 21 |
cerebral hemisphere | 1.34e-11 | 21 |
pallium | 1.34e-11 | 21 |
regional part of cerebral cortex | 1.95e-09 | 17 |