FFCP PHASE1:Mm9::chr2:78709639..78709668,+: Difference between revisions
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{{FFCP|EntrezGene=22193|HGNC=|MCL_coexpression_id=13|UniProt=P52483|association_with_transcript=-166bp_to_ENSMUST00000121433_5end|description=CAGE_peak_7_at_Ube2e3_5end|id=chr2:78709639..78709668,+|ontology_enrichment_celltype=CL:0000540!9.67e-13!33;CL:0000047!9.67e-13!33;CL:0000031!9.67e-13!33;CL:0000404!9.67e-13!33;CL:0002319!2.11e-11!43;CL:0000221!2.53e-11!44;CL:0000133!2.53e-11!44;CL:0000393!1.43e-09!39;CL:0000211!1.43e-09!39;CL:0000117!1.74e-09!23;CL:0000337!1.74e-09!23;CL:0000055!2.60e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,8.88e-15,33;CL:0000047,8.88e-15,33;CL:0000031,8.88e-15,33;CL:0000404,8.88e-15,33;CL:0002319,1.07e-12,43;CL:0000221,4.44e-12,44;CL:0000133,4.44e-12,44;CL:0000117,7.71e-11,23;CL:0000337,7.71e-11,23;CL:0000393,1.71e-10,39;CL:0000211,1.71e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.84e-20!73;UBERON:0005743!1.84e-20!73;UBERON:0000073!3.97e-19!75;UBERON:0001016!3.97e-19!75;UBERON:0001049!4.64e-14!52;UBERON:0005068!4.64e-14!52;UBERON:0006241!4.64e-14!52;UBERON:0007135!4.64e-14!52;UBERON:0002346!6.55e-14!71;UBERON:0003075!6.55e-14!71;UBERON:0007284!6.55e-14!71;UBERON:0002020!7.65e-14!34;UBERON:0004121!1.26e-13!102;UBERON:0000924!1.26e-13!102;UBERON:0006601!1.26e-13!102;UBERON:0003056!2.91e-12!49;UBERON:0000033!3.07e-12!63;UBERON:0000955!1.17e-11!50;UBERON:0006238!1.17e-11!50;UBERON:0002616!4.16e-11!49;UBERON:0002791!6.69e-11!29;UBERON:0003528!6.69e-11!29;UBERON:0001893!6.69e-11!29;UBERON:0002780!1.07e-10!39;UBERON:0001890!1.07e-10!39;UBERON:0006240!1.07e-10!39;UBERON:0003080!1.93e-10!40;UBERON:0000956!1.97e-10!21;UBERON:0001869!1.97e-10!21;UBERON:0000203!1.97e-10!21;UBERON:0002619!1.62e-08!17;UBERON:0000153!2.52e-08!94;UBERON:0007811!9.28e-08!86;UBERON:0002021!7.49e-07!10;UBERON:0000411!7.49e-07!10;UBERON:0001950!7.49e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.73e-23,73;UBERON:0001016,2.00e-21,75;UBERON:0002346,7.56e-19,64;UBERON:0003075,7.56e-19,64;UBERON:0007284,7.56e-19,64;UBERON:0004121,5.94e-18,95;UBERON:0000924,5.94e-18,95;UBERON:0006601,5.94e-18,95;UBERON:0002020,1.09e-15,34;UBERON:0000073,2.85e-15,54;UBERON:0001049,3.70e-15,52;UBERON:0005068,3.70e-15,52;UBERON:0006241,3.70e-15,52;UBERON:0007135,3.70e-15,52;UBERON:0010371,1.47e-14,73;UBERON:0010314,1.02e-13,92;UBERON:0003056,3.43e-13,49;UBERON:0000955,1.88e-12,47;UBERON:0006238,1.88e-12,47;UBERON:0003528,3.58e-12,29;UBERON:0002791,3.58e-12,29;UBERON:0001893,3.58e-12,29;UBERON:0000956,7.43e-12,21;UBERON:0001869,7.43e-12,21;UBERON:0000203,7.43e-12,21;UBERON:0002616,8.34e-12,46;UBERON:0002780,1.05e-11,39;UBERON:0001890,1.05e-11,39;UBERON:0006240,1.05e-11,39;UBERON:0003080,4.38e-11,40;UBERON:0002619,1.51e-09,17;UBERON:0002021,5.68e-08,10;UBERON:0000411,5.68e-08,10;UBERON:0001950,5.68e-08,10|phase1_expression=1.60148847104794,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0,3.37892933164,2.80877431586392,0.34243593645101,0,0,0.174840804837995,0,0,0,0.157731082679119,0,0,1.19060606211498,0.297872853602656,0.522399578277871,0.159992422793407,0,0,0,0.430942465371778,0,0.252030129759931,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,1.56478268869608,2.18025156380447,1.09843091367236,0.58328969722285,0.699932108126813,1.43752564364972,0.838913030288682,0,0,0.514518872071894,0.85960031981627,0.515672092277442,8.49729135610311,5.81890077199236,5.70448263155561,0.338844532069132,1.77858959222228,0.449949858640699,0,0,1.19840044207362,1.92109152660777,3.83651565541367,3.91517221161903,3.78584930432488,5.99867067247988,4.41737081903227,4.89963196859816,3.35459148563827,4.5960939330501,0,2.55374676170375,3.22573719838111,6.4624280987795,3.56801810049398,7.29278718779464,0.279182999001381,1.68828783009504,0.916789486660861,5.30331453852602,5.69486723196412,4.65998614563251,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0,0,0.280888840263504,0,0,0.35333957451034,0.985903938436763,0,0,0,0,0,0.505524445014783,0.34255163915718,0,0.148442139064825,0.867426633830679,0,0.461230994512117,0.452167921657868,0.352766121407114,0,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0,0,1.46390398505774,3.35114730901528,0,0.359445373517761,0,0.635351135365324,0.599162557619291,0,5.52879149296603,3.82413504423008,6.64860189058859,1.24672826735736,2.92034273521964,3.66621709861139,0.373220911830279,0.252722758433675,0,3.25301107406759,3.90833577536904,2.70093194708024,1.9591626318643,3.53789795586905,3.20284300712124,5.15359485078509,0.776110112217047,5.82033580918674,4.72765200419548,4.75068035242662,2.84954452155847,1.94633074457919,0,0.205782136407943,3.18454826909589,0,0,0,2.89976081549703,1.17263029990548,0.900310307305074,1.89395788468168,1.18058539048442,1.23413690309903,2.79040733700489,1.07309360559848,2.10177616260905,0.822799249567402,1.47750717671186,1.13496333364198,0.877199924551994,1.3173006917463,1.07365135008297,3.99550902271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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22193 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P52483 | |||
|association_with_transcript=-166bp_to_ENSMUST00000121433_5end | |||
|cluster_id=chr2:78709639..78709668,+ | |||
|description=CAGE_peak_7_at_Ube2e3_5end | |||
|id=chr2:78709639..78709668,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.67e-13!33;CL:0000047!9.67e-13!33;CL:0000031!9.67e-13!33;CL:0000404!9.67e-13!33;CL:0002319!2.11e-11!43;CL:0000221!2.53e-11!44;CL:0000133!2.53e-11!44;CL:0000393!1.43e-09!39;CL:0000211!1.43e-09!39;CL:0000117!1.74e-09!23;CL:0000337!1.74e-09!23;CL:0000055!2.60e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.88e-15,33;CL:0000047,8.88e-15,33;CL:0000031,8.88e-15,33;CL:0000404,8.88e-15,33;CL:0002319,1.07e-12,43;CL:0000221,4.44e-12,44;CL:0000133,4.44e-12,44;CL:0000117,7.71e-11,23;CL:0000337,7.71e-11,23;CL:0000393,1.71e-10,39;CL:0000211,1.71e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.84e-20!73;UBERON:0005743!1.84e-20!73;UBERON:0000073!3.97e-19!75;UBERON:0001016!3.97e-19!75;UBERON:0001049!4.64e-14!52;UBERON:0005068!4.64e-14!52;UBERON:0006241!4.64e-14!52;UBERON:0007135!4.64e-14!52;UBERON:0002346!6.55e-14!71;UBERON:0003075!6.55e-14!71;UBERON:0007284!6.55e-14!71;UBERON:0002020!7.65e-14!34;UBERON:0004121!1.26e-13!102;UBERON:0000924!1.26e-13!102;UBERON:0006601!1.26e-13!102;UBERON:0003056!2.91e-12!49;UBERON:0000033!3.07e-12!63;UBERON:0000955!1.17e-11!50;UBERON:0006238!1.17e-11!50;UBERON:0002616!4.16e-11!49;UBERON:0002791!6.69e-11!29;UBERON:0003528!6.69e-11!29;UBERON:0001893!6.69e-11!29;UBERON:0002780!1.07e-10!39;UBERON:0001890!1.07e-10!39;UBERON:0006240!1.07e-10!39;UBERON:0003080!1.93e-10!40;UBERON:0000956!1.97e-10!21;UBERON:0001869!1.97e-10!21;UBERON:0000203!1.97e-10!21;UBERON:0002619!1.62e-08!17;UBERON:0000153!2.52e-08!94;UBERON:0007811!9.28e-08!86;UBERON:0002021!7.49e-07!10;UBERON:0000411!7.49e-07!10;UBERON:0001950!7.49e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.73e-23,73;UBERON:0001016,2.00e-21,75;UBERON:0002346,7.56e-19,64;UBERON:0003075,7.56e-19,64;UBERON:0007284,7.56e-19,64;UBERON:0004121,5.94e-18,95;UBERON:0000924,5.94e-18,95;UBERON:0006601,5.94e-18,95;UBERON:0002020,1.09e-15,34;UBERON:0000073,2.85e-15,54;UBERON:0001049,3.70e-15,52;UBERON:0005068,3.70e-15,52;UBERON:0006241,3.70e-15,52;UBERON:0007135,3.70e-15,52;UBERON:0010371,1.47e-14,73;UBERON:0010314,1.02e-13,92;UBERON:0003056,3.43e-13,49;UBERON:0000955,1.88e-12,47;UBERON:0006238,1.88e-12,47;UBERON:0003528,3.58e-12,29;UBERON:0002791,3.58e-12,29;UBERON:0001893,3.58e-12,29;UBERON:0000956,7.43e-12,21;UBERON:0001869,7.43e-12,21;UBERON:0000203,7.43e-12,21;UBERON:0002616,8.34e-12,46;UBERON:0002780,1.05e-11,39;UBERON:0001890,1.05e-11,39;UBERON:0006240,1.05e-11,39;UBERON:0003080,4.38e-11,40;UBERON:0002619,1.51e-09,17;UBERON:0002021,5.68e-08,10;UBERON:0000411,5.68e-08,10;UBERON:0001950,5.68e-08,10 | |||
|phase1_expression=1.60148847104794,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0,3.37892933164,2.80877431586392,0.34243593645101,0,0,0.174840804837995,0,0,0,0.157731082679119,0,0,1.19060606211498,0.297872853602656,0.522399578277871,0.159992422793407,0,0,0,0.430942465371778,0,0.252030129759931,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,1.56478268869608,2.18025156380447,1.09843091367236,0.58328969722285,0.699932108126813,1.43752564364972,0.838913030288682,0,0,0.514518872071894,0.85960031981627,0.515672092277442,8.49729135610311,5.81890077199236,5.70448263155561,0.338844532069132,1.77858959222228,0.449949858640699,0,0,1.19840044207362,1.92109152660777,3.83651565541367,3.91517221161903,3.78584930432488,5.99867067247988,4.41737081903227,4.89963196859816,3.35459148563827,4.5960939330501,0,2.55374676170375,3.22573719838111,6.4624280987795,3.56801810049398,7.29278718779464,0.279182999001381,1.68828783009504,0.916789486660861,5.30331453852602,5.69486723196412,4.65998614563251,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0,0,0.280888840263504,0,0,0.35333957451034,0.985903938436763,0,0,0,0,0,0.505524445014783,0.34255163915718,0,0.148442139064825,0.867426633830679,0,0.461230994512117,0.452167921657868,0.352766121407114,0,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0,0,1.46390398505774,3.35114730901528,0,0.359445373517761,0,0.635351135365324,0.599162557619291,0,5.52879149296603,3.82413504423008,6.64860189058859,1.24672826735736,2.92034273521964,3.66621709861139,0.373220911830279,0.252722758433675,0,3.25301107406759,3.90833577536904,2.70093194708024,1.9591626318643,3.53789795586905,3.20284300712124,5.15359485078509,0.776110112217047,5.82033580918674,4.72765200419548,4.75068035242662,2.84954452155847,1.94633074457919,0,0.205782136407943,3.18454826909589,0,0,0,2.89976081549703,1.17263029990548,0.900310307305074,1.89395788468168,1.18058539048442,1.23413690309903,2.79040733700489,1.07309360559848,2.10177616260905,0.822799249567402,1.47750717671186,1.13496333364198,0.877199924551994,1.3173006917463,1.07365135008297,3.99550902271842,3.39585220851639,0,0,2.77274725695804,1.39342003116263,1.03093969057675,0.80673409849337,0.889512175379481,1.71203063501303,0,0.823494773620054,1.00534083520108,0.397912944082302,0.779856348476481,0,0.216138049874694,0,2.46568271239006,1.48523066392647,0,1.62921062276251,1.16371492300575,1.19230893813542,0.822074982615345,0.295220295959204,0.156998727841375,0.246794327843601,0.592905254174298,1.16791574001266,0.196558995113203,0.449724224769707,0.202860121388503,0.482354319504834,0.50925170356284,0,0.162135226775035,0.274561413188081,0,0,0.312037673114561,0.505157755894224,0.179397413521912,0.482443521363367,0.554259570499814,4.73728529426212,1.46668478797823,1.86719594352707,1.17345124144251,1.00503754465089,1.19021820443007,1.36593553500459,0.472905432318573,0.221464689648775,0.797273843287435,0.983179888294428,0.863424909329478,0.578596234326046,0,0,0,0,0.481651769963376,1.52375192569864,0.491804836130026,0.252470927204373,2.52406575533005,1.95219372148319,4.95473814785438,2.38968797952552,1.55959071857676,2.26461224631066,2.83367491172426,4.67609372658099,3.95287777946523,5.46246237917072,0.141940085208269,1.78065603667255,2.44330439030364,0.494910368917606,0,1.21390318077491,1.51161778482376,0.754420319023592,0.885905678642318,0,0.516856586336442,0,1.06949213515416,0.948110273807448,0,1.03135543248187,0.340439605753788,3.06103859853227,1.55230420539305,2.57204442037911,1.06404140185364,1.96205699362278,0,0.913394847343798,0.23467170806371,0.63549621259146,0,0,0.322928853391811,0.301564624640779,0.716234064018819,0.820704498725306,0,1.29797711407357,0.341741761595705,1.23832120777933,0.555583582109135,0.188368457004691,0.136694227721025,0.228778173206523,1.5298058699447,1.25956307091292,1.10559979043539,0,3.79603192297362,1.82987520414164,1.29606408986162,0.627264888043406,0.87345025498471,0.944050424693745,0.330613822901344,0,0.129614973291793,0,1.12738587736838,2.99033092087958,4.46737924234164,3.50012139019286,3.22899558694328,2.87225413334323,3.52071715937262,3.1249052362548,4.40409246587986,3.14059357073808,2.59227005632079,0,1.62180172232131,0.821687657318618,0.25984164595559,0.537080087002444,0.596044064343795,1.32214994471966,0.738447635872886,1.21159739937777,0.762068066549998,0.604957110821043,0.487289403698762,0.481059208201647,0.350630706544707,0,0.221985953374065,0.448569283047378,0.167884616364078,0.19318959403219,0,0.36630324853453,0,0,5.0827665835536,6.44455331110048,9.73922372846974,7.56154002312225,4.11049511862385,4.5323633843382,2.70009000092722,3.60256962579376,5.43770890781046,3.62432218226274,4.4628559461196,7.98049746802062,3.75613932659095,1.21553358534147,1.88651846365184,2.02227859295016,1.55572709461131,0.618105171716683,0,2.52697211763797,0.50695859978048,0.565879024158229,1.21733959710847,1.15245274328765,1.14870937911227,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| |||
|short_description=p7@Ube2e3 | |||
}} |
Revision as of 12:56, 5 August 2015
Short description: | p7@Ube2e3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Ube2e3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -166bp_to_ENSMUST00000121433_5end |
EntrezGene: | 22193 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.88e-15 | 33 |
neuronal stem cell | 8.88e-15 | 33 |
neuroblast | 8.88e-15 | 33 |
electrically signaling cell | 8.88e-15 | 33 |
neural cell | 1.07e-12 | 43 |
ectodermal cell | 4.44e-12 | 44 |
neurectodermal cell | 4.44e-12 | 44 |
CNS neuron (sensu Vertebrata) | 7.71e-11 | 23 |
neuroblast (sensu Vertebrata) | 7.71e-11 | 23 |
electrically responsive cell | 1.71e-10 | 39 |
electrically active cell | 1.71e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.73e-23 | 73 |
nervous system | 2.00e-21 | 75 |
neurectoderm | 7.56e-19 | 64 |
neural plate | 7.56e-19 | 64 |
presumptive neural plate | 7.56e-19 | 64 |
ectoderm-derived structure | 5.94e-18 | 95 |
ectoderm | 5.94e-18 | 95 |
presumptive ectoderm | 5.94e-18 | 95 |
gray matter | 1.09e-15 | 34 |
regional part of nervous system | 2.85e-15 | 54 |
neural tube | 3.70e-15 | 52 |
neural rod | 3.70e-15 | 52 |
future spinal cord | 3.70e-15 | 52 |
neural keel | 3.70e-15 | 52 |
ecto-epithelium | 1.47e-14 | 73 |
structure with developmental contribution from neural crest | 1.02e-13 | 92 |
pre-chordal neural plate | 3.43e-13 | 49 |
brain | 1.88e-12 | 47 |
future brain | 1.88e-12 | 47 |
brain grey matter | 3.58e-12 | 29 |
regional part of telencephalon | 3.58e-12 | 29 |
telencephalon | 3.58e-12 | 29 |
cerebral cortex | 7.43e-12 | 21 |
cerebral hemisphere | 7.43e-12 | 21 |
pallium | 7.43e-12 | 21 |
regional part of brain | 8.34e-12 | 46 |
regional part of forebrain | 1.05e-11 | 39 |
forebrain | 1.05e-11 | 39 |
future forebrain | 1.05e-11 | 39 |
anterior neural tube | 4.38e-11 | 40 |
regional part of cerebral cortex | 1.51e-09 | 17 |
occipital lobe | 5.68e-08 | 10 |
visual cortex | 5.68e-08 | 10 |
neocortex | 5.68e-08 | 10 |