FFCP PHASE1:Mm9::chr4:48058129..48058179,+: Difference between revisions
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{{FFCP|EntrezGene=18124|HGNC=|MCL_coexpression_id=7|UniProt=B1AVI1|association_with_transcript=26bp_to_ENSMUST00000154186,uc008suu.1_5end|description=CAGE_peak_2_at_Nr4a3_5end|id=chr4:48058129..48058179,+|ontology_enrichment_celltype=CL:0000791!1.49e-07!9;CL:0000789!1.49e-07!9;CL:0002420!1.49e-07!9;CL:0002419!1.49e-07!9;CL:0000790!1.49e-07!9;CL:0000624!6.99e-07!8|ontology_enrichment_celltype_v019_2=CL:0000791,1.22e-08,9;CL:0000789,1.22e-08,9;CL:0002420,1.22e-08,9;CL:0002419,1.22e-08,9;CL:0000790,1.22e-08,9;CL:0000624,7.50e-08,8;CL:0000838,6.64e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.79e-14!102;UBERON:0000924!2.79e-14!102;UBERON:0006601!2.79e-14!102;UBERON:0007811!3.14e-14!86;UBERON:0002346!5.09e-13!71;UBERON:0003075!5.09e-13!71;UBERON:0007284!5.09e-13!71;UBERON:0000955!5.26e-13!50;UBERON:0006238!5.26e-13!50;UBERON:0000153!1.71e-12!94;UBERON:0002616!1.94e-12!49;UBERON:0000033!2.22e-12!63;UBERON:0001049!5.69e-12!52;UBERON:0005068!5.69e-12!52;UBERON:0006241!5.69e-12!52;UBERON:0007135!5.69e-12!52;UBERON:0002020!1.11e-11!34;UBERON:0000073!1.34e-11!75;UBERON:0001016!1.34e-11!75;UBERON:0001017!1.45e-11!73;UBERON:0005743!1.45e-11!73;UBERON:0002791!2.21e-11!29;UBERON:0003528!2.21e-11!29;UBERON:0001893!2.21e-11!29;UBERON:0003080!2.35e-11!40;UBERON:0002780!3.87e-11!39;UBERON:0001890!3.87e-11!39;UBERON:0006240!3.87e-11!39;UBERON:0000956!9.81e-11!21;UBERON:0001869!9.81e-11!21;UBERON:0000203!9.81e-11!21;UBERON:0003056!1.24e-09!49;UBERON:0002619!1.12e-08!17;UBERON:0000064!1.52e-08!99;UBERON:0002021!3.05e-07!10;UBERON:0000411!3.05e-07!10;UBERON:0001950!3.05e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.42e-14,54;UBERON:0003528,1.42e-13,29;UBERON:0002791,1.42e-13,29;UBERON:0001893,1.42e-13,29;UBERON:0002020,1.71e-13,34;UBERON:0003080,2.56e-13,40;UBERON:0002780,4.62e-13,39;UBERON:0001890,4.62e-13,39;UBERON:0006240,4.62e-13,39;UBERON:0000955,8.29e-13,47;UBERON:0006238,8.29e-13,47;UBERON:0001049,1.10e-12,52;UBERON:0005068,1.10e-12,52;UBERON:0006241,1.10e-12,52;UBERON:0007135,1.10e-12,52;UBERON:0000956,2.14e-12,21;UBERON:0001869,2.14e-12,21;UBERON:0000203,2.14e-12,21;UBERON:0002616,3.60e-12,46;UBERON:0010371,4.93e-11,73;UBERON:0003056,6.29e-11,49;UBERON:0001017,6.62e-11,73;UBERON:0001016,9.29e-11,75;UBERON:0010314,1.02e-10,92;UBERON:0002346,1.37e-10,64;UBERON:0003075,1.37e-10,64;UBERON:0007284,1.37e-10,64;UBERON:0004121,2.51e-10,95;UBERON:0000924,2.51e-10,95;UBERON:0006601,2.51e-10,95;UBERON:0002619,5.74e-10,17;UBERON:0002021,2.83e-08,10;UBERON:0000411,2.83e-08,10;UBERON:0001950,2.83e-08,10|phase1_expression=7.20669811971573,0.697950815278722,0,1.81478526784098,0.500895729946347,1.34303417529512,0.934450562382103,80.7020771509852,924.277960925692,1161.66224413605,279.085288207573,226.872020182737,52.5586240888802,62.0684857174882,0.333109761815663,0.202475267389826,0,0.946386496074713,1.91960207048034,0.84877930359606,4.42225108785563,0.0992909512008853,0,0.319984845586813,0.68822784320151,0,0,0.430942465371778,0,0.252030129759931,0,0.635030673459631,0,0,1.44425809875637,0.332469290716985,1.22501613757421,0,1.5626706890476,0,2.35292595212406,4.78131839470912,0.485510353031154,0.125896817975577,0.506884656097573,1.10128051297009,0.782391344348039,0.65407546914134,2.41654801007919,1.1665793944457,0.279972843250725,0,32.2142603630854,299.574564650685,198.295341494054,1.28629718017973,1.14613375975503,2.57836046138721,1.61853168687678,3.1739458756322,1.26766280701236,0.338844532069132,0,0,0.988866362566974,0,0.299600110518405,0.768436610643109,12.3390638647088,18.9008313664367,11.567872874326,1.42825492201902,0.662605622854841,2.81728838194394,1.15014565221884,2.75765635983006,3.30347642998166,7.66124028511126,6.60508093001847,1.84640802822271,2.01272815925301,4.16730696445408,1.11673199600552,0,8.86229837105499,1.76777151284201,2.56269025438385,2.42319279572891,2.12033341332915,0.529000920747499,10.7249860819621,0.860423876981386,0,0,0,0,1.82577746171277,0.170430322578058,0,0,9.57735254481427,0,0,0,0,0,0.505524445014783,1.25602267690966,15.2773351351831,24.6413950847609,1.56136794089522,8.52503339273995,8.53277339847416,6.78251882486802,7.52567725668511,6.78599593180248,1.97755974187499,13.4477401935518,0,0.485300549842228,0.883366073841574,0.969750506270444,0,13.4679166625312,2.51336048176146,1.02182822083437,20.0091257924887,5.39912457894067,10.0385479387721,2.09706895166752,21.9600289352941,6.40837195775608,27.8118912307642,9.97290283588289,6.02585329222724,4.38051410282946,1.12023300235348,0.373220911830279,0,2.94618598241064,0.130120442962704,0.229902104433473,1.62055916824814,0.753524089178575,1.2246569847239,0.384341160854549,0.187403449119458,1.81092359517311,0.215567992932842,0.756424320671277,0.175951124163949,0.43839146485515,0.278047249225598,0,1.02891068203972,0.199034266818493,1.40442637462647,1.02939162845886,0.852490498186778,0.621377317606506,0.234526059981096,0.180062061461015,0.710234206755631,0.393528463494808,0.154267112887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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18124 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B1AVI1 | |||
|association_with_transcript=26bp_to_ENSMUST00000154186,uc008suu.1_5end | |||
|cluster_id=chr4:48058129..48058179,+ | |||
|description=CAGE_peak_2_at_Nr4a3_5end | |||
|id=chr4:48058129..48058179,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.49e-07!9;CL:0000789!1.49e-07!9;CL:0002420!1.49e-07!9;CL:0002419!1.49e-07!9;CL:0000790!1.49e-07!9;CL:0000624!6.99e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.22e-08,9;CL:0000789,1.22e-08,9;CL:0002420,1.22e-08,9;CL:0002419,1.22e-08,9;CL:0000790,1.22e-08,9;CL:0000624,7.50e-08,8;CL:0000838,6.64e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.79e-14!102;UBERON:0000924!2.79e-14!102;UBERON:0006601!2.79e-14!102;UBERON:0007811!3.14e-14!86;UBERON:0002346!5.09e-13!71;UBERON:0003075!5.09e-13!71;UBERON:0007284!5.09e-13!71;UBERON:0000955!5.26e-13!50;UBERON:0006238!5.26e-13!50;UBERON:0000153!1.71e-12!94;UBERON:0002616!1.94e-12!49;UBERON:0000033!2.22e-12!63;UBERON:0001049!5.69e-12!52;UBERON:0005068!5.69e-12!52;UBERON:0006241!5.69e-12!52;UBERON:0007135!5.69e-12!52;UBERON:0002020!1.11e-11!34;UBERON:0000073!1.34e-11!75;UBERON:0001016!1.34e-11!75;UBERON:0001017!1.45e-11!73;UBERON:0005743!1.45e-11!73;UBERON:0002791!2.21e-11!29;UBERON:0003528!2.21e-11!29;UBERON:0001893!2.21e-11!29;UBERON:0003080!2.35e-11!40;UBERON:0002780!3.87e-11!39;UBERON:0001890!3.87e-11!39;UBERON:0006240!3.87e-11!39;UBERON:0000956!9.81e-11!21;UBERON:0001869!9.81e-11!21;UBERON:0000203!9.81e-11!21;UBERON:0003056!1.24e-09!49;UBERON:0002619!1.12e-08!17;UBERON:0000064!1.52e-08!99;UBERON:0002021!3.05e-07!10;UBERON:0000411!3.05e-07!10;UBERON:0001950!3.05e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.42e-14,54;UBERON:0003528,1.42e-13,29;UBERON:0002791,1.42e-13,29;UBERON:0001893,1.42e-13,29;UBERON:0002020,1.71e-13,34;UBERON:0003080,2.56e-13,40;UBERON:0002780,4.62e-13,39;UBERON:0001890,4.62e-13,39;UBERON:0006240,4.62e-13,39;UBERON:0000955,8.29e-13,47;UBERON:0006238,8.29e-13,47;UBERON:0001049,1.10e-12,52;UBERON:0005068,1.10e-12,52;UBERON:0006241,1.10e-12,52;UBERON:0007135,1.10e-12,52;UBERON:0000956,2.14e-12,21;UBERON:0001869,2.14e-12,21;UBERON:0000203,2.14e-12,21;UBERON:0002616,3.60e-12,46;UBERON:0010371,4.93e-11,73;UBERON:0003056,6.29e-11,49;UBERON:0001017,6.62e-11,73;UBERON:0001016,9.29e-11,75;UBERON:0010314,1.02e-10,92;UBERON:0002346,1.37e-10,64;UBERON:0003075,1.37e-10,64;UBERON:0007284,1.37e-10,64;UBERON:0004121,2.51e-10,95;UBERON:0000924,2.51e-10,95;UBERON:0006601,2.51e-10,95;UBERON:0002619,5.74e-10,17;UBERON:0002021,2.83e-08,10;UBERON:0000411,2.83e-08,10;UBERON:0001950,2.83e-08,10 | |||
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| |||
|short_description=p2@Nr4a3 | |||
}} |
Revision as of 13:34, 5 August 2015
Short description: | p2@Nr4a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nr4a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 26bp_to_ENSMUST00000154186, uc008suu.1_5end |
EntrezGene: | 18124 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.22e-08 | 9 |
alpha-beta T cell | 1.22e-08 | 9 |
immature T cell | 1.22e-08 | 9 |
mature T cell | 1.22e-08 | 9 |
immature alpha-beta T cell | 1.22e-08 | 9 |
CD4-positive, alpha-beta T cell | 7.50e-08 | 8 |
lymphoid lineage restricted progenitor cell | 6.64e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 7.42e-14 | 54 |
brain grey matter | 1.42e-13 | 29 |
regional part of telencephalon | 1.42e-13 | 29 |
telencephalon | 1.42e-13 | 29 |
gray matter | 1.71e-13 | 34 |
anterior neural tube | 2.56e-13 | 40 |
regional part of forebrain | 4.62e-13 | 39 |
forebrain | 4.62e-13 | 39 |
future forebrain | 4.62e-13 | 39 |
brain | 8.29e-13 | 47 |
future brain | 8.29e-13 | 47 |
neural tube | 1.10e-12 | 52 |
neural rod | 1.10e-12 | 52 |
future spinal cord | 1.10e-12 | 52 |
neural keel | 1.10e-12 | 52 |
cerebral cortex | 2.14e-12 | 21 |
cerebral hemisphere | 2.14e-12 | 21 |
pallium | 2.14e-12 | 21 |
regional part of brain | 3.60e-12 | 46 |
ecto-epithelium | 4.93e-11 | 73 |
pre-chordal neural plate | 6.29e-11 | 49 |
central nervous system | 6.62e-11 | 73 |
nervous system | 9.29e-11 | 75 |
structure with developmental contribution from neural crest | 1.02e-10 | 92 |
neurectoderm | 1.37e-10 | 64 |
neural plate | 1.37e-10 | 64 |
presumptive neural plate | 1.37e-10 | 64 |
ectoderm-derived structure | 2.51e-10 | 95 |
ectoderm | 2.51e-10 | 95 |
presumptive ectoderm | 2.51e-10 | 95 |
regional part of cerebral cortex | 5.74e-10 | 17 |
occipital lobe | 2.83e-08 | 10 |
visual cortex | 2.83e-08 | 10 |
neocortex | 2.83e-08 | 10 |