FFCP PHASE1:Mm9::chr11:121121297..121121369,+: Difference between revisions
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{{FFCP|EntrezGene=68837|HGNC=|MCL_coexpression_id=13|UniProt=Q3UCQ1|association_with_transcript=0bp_to_ENSMUST00000106113,NM_001080932_5end|description=CAGE_peak_1_at_Foxk2_5end|id=chr11:121121297..121121369,+|ontology_enrichment_celltype=CL:0002319!2.60e-17!43;CL:0000221!1.51e-16!44;CL:0000133!1.51e-16!44;CL:0000540!1.43e-15!33;CL:0000047!1.43e-15!33;CL:0000031!1.43e-15!33;CL:0000404!1.43e-15!33;CL:0000055!4.06e-13!50;CL:0000117!5.08e-13!23;CL:0000337!5.08e-13!23;CL:0000393!2.00e-11!39;CL:0000211!2.00e-11!39|ontology_enrichment_celltype_v019_2=CL:0002319,2.60e-17,43;CL:0000221,1.51e-16,44;CL:0000133,1.51e-16,44;CL:0000540,1.43e-15,33;CL:0000047,1.43e-15,33;CL:0000031,1.43e-15,33;CL:0000404,1.43e-15,33;CL:0000117,5.08e-13,23;CL:0000337,5.08e-13,23;CL:0000393,2.00e-11,39;CL:0000211,2.00e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.32e-30!75;UBERON:0001016!1.32e-30!75;UBERON:0001017!5.22e-30!73;UBERON:0005743!5.22e-30!73;UBERON:0004121!9.77e-25!102;UBERON:0000924!9.77e-25!102;UBERON:0006601!9.77e-25!102;UBERON:0001049!3.00e-21!52;UBERON:0005068!3.00e-21!52;UBERON:0006241!3.00e-21!52;UBERON:0007135!3.00e-21!52;UBERON:0000955!1.54e-19!50;UBERON:0006238!1.54e-19!50;UBERON:0002346!2.69e-19!71;UBERON:0003075!2.69e-19!71;UBERON:0007284!2.69e-19!71;UBERON:0002616!5.29e-19!49;UBERON:0002020!1.79e-18!34;UBERON:0000033!9.28e-18!63;UBERON:0003056!9.62e-17!49;UBERON:0003080!5.86e-16!40;UBERON:0002780!1.07e-15!39;UBERON:0001890!1.07e-15!39;UBERON:0006240!1.07e-15!39;UBERON:0002791!4.52e-15!29;UBERON:0003528!4.52e-15!29;UBERON:0001893!4.52e-15!29;UBERON:0000153!2.70e-12!94;UBERON:0000956!6.65e-12!21;UBERON:0001869!6.65e-12!21;UBERON:0000203!6.65e-12!21;UBERON:0007811!1.60e-11!86;UBERON:0002619!1.32e-09!17;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10;UBERON:0000468!9.53e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.32e-30,75;UBERON:0001017,5.22e-30,73;UBERON:0004121,2.14e-28,95;UBERON:0000924,2.14e-28,95;UBERON:0006601,2.14e-28,95;UBERON:0002346,1.89e-23,64;UBERON:0003075,1.89e-23,64;UBERON:0007284,1.89e-23,64;UBERON:0000073,1.78e-22,54;UBERON:0010371,1.48e-21,73;UBERON:0001049,3.00e-21,52;UBERON:0005068,3.00e-21,52;UBERON:0006241,3.00e-21,52;UBERON:0007135,3.00e-21,52;UBERON:0002020,1.79e-18,34;UBERON:0000955,3.30e-18,47;UBERON:0006238,3.30e-18,47;UBERON:0002616,1.11e-17,46;UBERON:0003056,9.62e-17,49;UBERON:0003080,5.86e-16,40;UBERON:0002780,1.07e-15,39;UBERON:0001890,1.07e-15,39;UBERON:0006240,1.07e-15,39;UBERON:0003528,4.52e-15,29;UBERON:0002791,4.52e-15,29;UBERON:0001893,4.52e-15,29;UBERON:0010314,3.47e-13,92;UBERON:0000956,6.65e-12,21;UBERON:0001869,6.65e-12,21;UBERON:0000203,6.65e-12,21;UBERON:0002619,1.32e-09,17;UBERON:0002021,1.87e-07,10;UBERON:0000411,1.87e-07,10;UBERON:0001950,1.87e-07,10|phase1_expression=41.4785514001416,25.126229350034,30.4849490390989,37.2030979907401,49.5886772646884,41.130421618413,40.882212104217,31.1187209494199,42.658982811955,43.5360018958908,56.6731474826422,74.8262851376255,38.1777627746589,35.230422174856,53.9637814141374,47.1767373018294,60.8618833971488,39.5905017524588,40.0374146128757,37.3462893582267,59.2751732352956,42.2979452115771,36.0455709011731,20.3190376947626,17.6645146421721,20.0981187440257,24.1226717849082,28.4422027145374,24.1329742709595,24.1948924569534,27.4945833212578,80.0138648559135,77.4981632356558,47.5445043046316,27.1520522566198,35.4079794613589,39.6088551148996,28.8786825208466,19.533383613095,18.3233310390829,24.7057224973026,28.0048648832963,25.7320487106511,41.5459499319405,42.4769341809766,40.7473789798933,68.8504383026274,71.5122512927865,56.0199765972903,57.9401099241365,61.7340119367849,64.6886539642372,36.5766081205865,54.4021606508508,54.1111016619367,54.7962598756567,41.5473487911197,41.2537673821954,134.338130010773,128.544807963104,141.978234385384,65.0581501572734,53.3576877666684,49.4944844504769,83.0647744556259,51.8650483910653,71.9040265244171,66.0855485153074,108.148265637742,111.244893185313,109.999954786773,134.827264638595,129.649833538597,98.727584167253,105.334172649042,102.033285313712,79.2834343195599,75.5909041464311,76.8032666281217,136.897966663941,121.587078347602,106.266327593579,61.1410767813024,61.3411244934531,63.2584745795994,141.127092441887,120.731185317639,121.159639786445,65.2759786532047,65.520542612583,30.1459068249745,48.1837371109576,42.8381940235883,24.8263468153396,41.5856907166508,32.7059627581055,47.3297695844004,26.587130322177,27.797102492507,29.6805242588686,42.8163996121109,44.9142670950112,33.1246811618639,56.8853362522665,56.2876706629157,54.2190112116711,47.5192978313896,37.3381286681326,44.0194402200192,48.5405794741977,53.4334806439698,45.6698217468212,41.0495585115784,35.1183752487611,36.3349105049328,44.3603067393754,27.9330313539842,48.0069864974107,45.1151381494436,61.7949366799103,60.9522590950686,45.0933985415757,44.7340226923493,95.4465398257644,71.4213270233882,35.7639877292028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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68837 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UCQ1 | |||
|association_with_transcript=0bp_to_ENSMUST00000106113,NM_001080932_5end | |||
|cluster_id=chr11:121121297..121121369,+ | |||
|description=CAGE_peak_1_at_Foxk2_5end | |||
|id=chr11:121121297..121121369,+ | |||
|ontology_enrichment_celltype=CL:0002319!2.60e-17!43;CL:0000221!1.51e-16!44;CL:0000133!1.51e-16!44;CL:0000540!1.43e-15!33;CL:0000047!1.43e-15!33;CL:0000031!1.43e-15!33;CL:0000404!1.43e-15!33;CL:0000055!4.06e-13!50;CL:0000117!5.08e-13!23;CL:0000337!5.08e-13!23;CL:0000393!2.00e-11!39;CL:0000211!2.00e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.60e-17,43;CL:0000221,1.51e-16,44;CL:0000133,1.51e-16,44;CL:0000540,1.43e-15,33;CL:0000047,1.43e-15,33;CL:0000031,1.43e-15,33;CL:0000404,1.43e-15,33;CL:0000117,5.08e-13,23;CL:0000337,5.08e-13,23;CL:0000393,2.00e-11,39;CL:0000211,2.00e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.32e-30!75;UBERON:0001016!1.32e-30!75;UBERON:0001017!5.22e-30!73;UBERON:0005743!5.22e-30!73;UBERON:0004121!9.77e-25!102;UBERON:0000924!9.77e-25!102;UBERON:0006601!9.77e-25!102;UBERON:0001049!3.00e-21!52;UBERON:0005068!3.00e-21!52;UBERON:0006241!3.00e-21!52;UBERON:0007135!3.00e-21!52;UBERON:0000955!1.54e-19!50;UBERON:0006238!1.54e-19!50;UBERON:0002346!2.69e-19!71;UBERON:0003075!2.69e-19!71;UBERON:0007284!2.69e-19!71;UBERON:0002616!5.29e-19!49;UBERON:0002020!1.79e-18!34;UBERON:0000033!9.28e-18!63;UBERON:0003056!9.62e-17!49;UBERON:0003080!5.86e-16!40;UBERON:0002780!1.07e-15!39;UBERON:0001890!1.07e-15!39;UBERON:0006240!1.07e-15!39;UBERON:0002791!4.52e-15!29;UBERON:0003528!4.52e-15!29;UBERON:0001893!4.52e-15!29;UBERON:0000153!2.70e-12!94;UBERON:0000956!6.65e-12!21;UBERON:0001869!6.65e-12!21;UBERON:0000203!6.65e-12!21;UBERON:0007811!1.60e-11!86;UBERON:0002619!1.32e-09!17;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10;UBERON:0000468!9.53e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.32e-30,75;UBERON:0001017,5.22e-30,73;UBERON:0004121,2.14e-28,95;UBERON:0000924,2.14e-28,95;UBERON:0006601,2.14e-28,95;UBERON:0002346,1.89e-23,64;UBERON:0003075,1.89e-23,64;UBERON:0007284,1.89e-23,64;UBERON:0000073,1.78e-22,54;UBERON:0010371,1.48e-21,73;UBERON:0001049,3.00e-21,52;UBERON:0005068,3.00e-21,52;UBERON:0006241,3.00e-21,52;UBERON:0007135,3.00e-21,52;UBERON:0002020,1.79e-18,34;UBERON:0000955,3.30e-18,47;UBERON:0006238,3.30e-18,47;UBERON:0002616,1.11e-17,46;UBERON:0003056,9.62e-17,49;UBERON:0003080,5.86e-16,40;UBERON:0002780,1.07e-15,39;UBERON:0001890,1.07e-15,39;UBERON:0006240,1.07e-15,39;UBERON:0003528,4.52e-15,29;UBERON:0002791,4.52e-15,29;UBERON:0001893,4.52e-15,29;UBERON:0010314,3.47e-13,92;UBERON:0000956,6.65e-12,21;UBERON:0001869,6.65e-12,21;UBERON:0000203,6.65e-12,21;UBERON:0002619,1.32e-09,17;UBERON:0002021,1.87e-07,10;UBERON:0000411,1.87e-07,10;UBERON:0001950,1.87e-07,10 | |||
|phase1_expression=41.4785514001416,25.126229350034,30.4849490390989,37.2030979907401,49.5886772646884,41.130421618413,40.882212104217,31.1187209494199,42.658982811955,43.5360018958908,56.6731474826422,74.8262851376255,38.1777627746589,35.230422174856,53.9637814141374,47.1767373018294,60.8618833971488,39.5905017524588,40.0374146128757,37.3462893582267,59.2751732352956,42.2979452115771,36.0455709011731,20.3190376947626,17.6645146421721,20.0981187440257,24.1226717849082,28.4422027145374,24.1329742709595,24.1948924569534,27.4945833212578,80.0138648559135,77.4981632356558,47.5445043046316,27.1520522566198,35.4079794613589,39.6088551148996,28.8786825208466,19.533383613095,18.3233310390829,24.7057224973026,28.0048648832963,25.7320487106511,41.5459499319405,42.4769341809766,40.7473789798933,68.8504383026274,71.5122512927865,56.0199765972903,57.9401099241365,61.7340119367849,64.6886539642372,36.5766081205865,54.4021606508508,54.1111016619367,54.7962598756567,41.5473487911197,41.2537673821954,134.338130010773,128.544807963104,141.978234385384,65.0581501572734,53.3576877666684,49.4944844504769,83.0647744556259,51.8650483910653,71.9040265244171,66.0855485153074,108.148265637742,111.244893185313,109.999954786773,134.827264638595,129.649833538597,98.727584167253,105.334172649042,102.033285313712,79.2834343195599,75.5909041464311,76.8032666281217,136.897966663941,121.587078347602,106.266327593579,61.1410767813024,61.3411244934531,63.2584745795994,141.127092441887,120.731185317639,121.159639786445,65.2759786532047,65.520542612583,30.1459068249745,48.1837371109576,42.8381940235883,24.8263468153396,41.5856907166508,32.7059627581055,47.3297695844004,26.587130322177,27.797102492507,29.6805242588686,42.8163996121109,44.9142670950112,33.1246811618639,56.8853362522665,56.2876706629157,54.2190112116711,47.5192978313896,37.3381286681326,44.0194402200192,48.5405794741977,53.4334806439698,45.6698217468212,41.0495585115784,35.1183752487611,36.3349105049328,44.3603067393754,27.9330313539842,48.0069864974107,45.1151381494436,61.7949366799103,60.9522590950686,45.0933985415757,44.7340226923493,95.4465398257644,71.4213270233882,35.7639877292028,29.8339660019741,15.5974710058286,23.7621324626631,66.3572532563365,92.8726223721812,109.067977633966,104.64224075575,107.911922993399,75.6348482196799,80.9583902708111,38.2916008077189,46.5282070081748,71.7732633951636,85.0185097781355,58.8144402191421,52.1877777063984,67.7033608068113,60.1312223164503,60.6205207438331,59.70099365274,62.4053485567794,56.3973348211054,94.6343488975177,76.9661746283024,66.3335738098087,65.9779154607,48.1021741160284,55.0238423105023,52.8860090568415,43.3894701664315,14.0442637462647,23.1613116403244,33.2471294292843,64.0018637134701,58.396988935293,49.3370048403181,51.6103523575758,58.4389768289789,40.8807849151552,52.0876036240914,52.0450398715261,34.5625413406822,51.1781133230924,36.7735119537173,51.6408316807101,42.690396328197,49.6183260557774,33.8200175276137,91.6864175739595,113.60669206673,23.7901523748335,46.0143985994567,63.5598986594997,62.2394280585975,62.5007187412153,46.9922612372388,43.5860965935946,39.1864789791872,36.0642086773829,29.97520975977,28.903549012031,23.2779072288146,34.8985715943225,38.6492345721315,27.6656703839609,28.6763433486289,77.7638393907635,59.409226557059,46.210171625963,56.6150691409974,55.8583163042762,47.2715426060747,48.7553701228024,43.397383506003,38.4646883211368,31.0960853082937,41.799820419288,73.5786916207975,59.1642575290741,55.7658038714437,57.2065542315578,54.2648609442938,42.5225172474971,46.0313819921297,35.5076146637328,28.2798255583724,23.0029130443767,25.6777253891267,34.9482193888308,35.1084640346485,33.1885215015538,23.1572890254416,42.8627401186523,55.520983648752,60.7859362128757,64.1636424230211,56.3256595892405,45.5617020241739,54.7500374037832,47.2223427815873,57.5368275987597,46.0646554469452,57.8820810226678,39.3271955317771,43.3439304483398,37.608755231193,43.729472342389,43.5124547054968,70.8140553147412,43.8739426624525,64.2202359951168,58.0197848631406,76.0658146547774,52.766423785714,76.3529890987341,65.9841477861319,84.8768187067228,76.7089841427692,81.5443147141562,84.3568061750721,87.4391115617772,71.8949410461827,69.5706489185881,91.2552538637932,54.0791724643503,42.557679276474,46.4227834157692,57.7395430403874,71.6823747035799,49.5272497756162,56.5345051524084,44.510798822392,45.476491503639,50.726799410748,45.7418078907751,46.1687836436432,40.2842037574735,42.0328888054635,62.1969790592493,69.1008139762852,56.172534949375,59.0600388422697,65.5848526778565,59.5856957387827,60.1183392047307,60.645397984704,55.2884709223126,58.4572702300031,49.0463869853155,30.7156502752539,76.9644109211817,60.0185960706987,48.7622568621635,69.9629929166608,51.0913632333424,56.4644695123011,34.6862195589522,62.3029014755313,55.1912944977064,37.1496362333801,47.4097990066462,48.4106934502056,62.3325678407875,53.0765361839132,27.3665272290107,29.2498535356445,30.1275942893644,40.0961659566348,67.3795666327818,53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| |||
|short_description=p1@Foxk2 | |||
}} |
Revision as of 15:56, 5 August 2015
Short description: | p1@Foxk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Foxk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000106113, NM_001080932_5end |
EntrezGene: | 68837 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.60e-17 | 43 |
ectodermal cell | 1.51e-16 | 44 |
neurectodermal cell | 1.51e-16 | 44 |
neuron | 1.43e-15 | 33 |
neuronal stem cell | 1.43e-15 | 33 |
neuroblast | 1.43e-15 | 33 |
electrically signaling cell | 1.43e-15 | 33 |
CNS neuron (sensu Vertebrata) | 5.08e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.08e-13 | 23 |
electrically responsive cell | 2.00e-11 | 39 |
electrically active cell | 2.00e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.32e-30 | 75 |
central nervous system | 5.22e-30 | 73 |
ectoderm-derived structure | 2.14e-28 | 95 |
ectoderm | 2.14e-28 | 95 |
presumptive ectoderm | 2.14e-28 | 95 |
neurectoderm | 1.89e-23 | 64 |
neural plate | 1.89e-23 | 64 |
presumptive neural plate | 1.89e-23 | 64 |
regional part of nervous system | 1.78e-22 | 54 |
ecto-epithelium | 1.48e-21 | 73 |
neural tube | 3.00e-21 | 52 |
neural rod | 3.00e-21 | 52 |
future spinal cord | 3.00e-21 | 52 |
neural keel | 3.00e-21 | 52 |
gray matter | 1.79e-18 | 34 |
brain | 3.30e-18 | 47 |
future brain | 3.30e-18 | 47 |
regional part of brain | 1.11e-17 | 46 |
pre-chordal neural plate | 9.62e-17 | 49 |
anterior neural tube | 5.86e-16 | 40 |
regional part of forebrain | 1.07e-15 | 39 |
forebrain | 1.07e-15 | 39 |
future forebrain | 1.07e-15 | 39 |
brain grey matter | 4.52e-15 | 29 |
regional part of telencephalon | 4.52e-15 | 29 |
telencephalon | 4.52e-15 | 29 |
structure with developmental contribution from neural crest | 3.47e-13 | 92 |
cerebral cortex | 6.65e-12 | 21 |
cerebral hemisphere | 6.65e-12 | 21 |
pallium | 6.65e-12 | 21 |
regional part of cerebral cortex | 1.32e-09 | 17 |
occipital lobe | 1.87e-07 | 10 |
visual cortex | 1.87e-07 | 10 |
neocortex | 1.87e-07 | 10 |