FFCP PHASE1:Mm9::chr13:24705519..24705547,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:24705519..24705547,-|id=chr13:24705519..24705547,-|ontology_enrichment_celltype=CL:0000838!9.15e-25!12;CL:0000542!9.24e-23!13;CL:0000051!9.24e-23!13;CL:0000084!1.93e-21!11;CL:0000827!1.93e-21!11;CL:0000988!5.80e-21!32;CL:0002032!5.80e-21!32;CL:0000037!5.80e-21!32;CL:0000566!5.80e-21!32;CL:0000837!5.80e-21!32;CL:0000791!1.39e-20!9;CL:0000789!1.39e-20!9;CL:0002420!1.39e-20!9;CL:0002419!1.39e-20!9;CL:0000790!1.39e-20!9;CL:0002031!3.67e-20!25;CL:0000624!3.37e-17!8;CL:0000738!4.27e-17!17;CL:0002087!4.27e-17!17;CL:0002320!7.87e-14!46;CL:0000134!7.87e-14!46;CL:0000219!2.06e-11!54;CL:0000893!1.70e-10!6;CL:0002489!1.70e-10!6;CL:0000898!1.70e-10!6;CL:0000809!1.70e-10!6;CL:0000810!1.70e-10!6;CL:0000895!1.70e-10!6;CL:0000808!1.70e-10!6;CL:0000894!1.70e-10!6;CL:0000806!1.70e-10!6;CL:0000807!1.70e-10!6;CL:0000805!1.70e-10!6;CL:0002425!1.70e-10!6;CL:0002436!1.70e-10!6;CL:0002427!1.70e-10!6;CL:0002428!1.70e-10!6;CL:0002429!1.70e-10!6;CL:0002433!1.70e-10!6;CL:0002431!1.70e-10!6;CL:0002432!1.70e-10!6;CL:0000723!2.29e-09!91;CL:0000048!2.29e-09!91;CL:0000063!6.99e-09!66;CL:0000034!1.35e-08!97|ontology_enrichment_celltype_v019_2=CL:0000624,2.41e-11,8;CL:0000815,1.12e-10,1;CL:0000792,1.12e-10,1;CL:0000355,1.79e-10,9;CL:0000791,3.72e-10,9;CL:0000789,3.72e-10,9;CL:0002420,3.72e-10,9;CL:0002419,3.72e-10,9;CL:0000790,3.72e-10,9;CL:0000084,2.02e-08,11;CL:0000827,2.02e-08,11;CL:0000838,9.06e-08,12;CL:0000542,3.24e-07,13;CL:0000051,3.24e-07,13|ontology_enrichment_disease=DOID:0060100!2.87e-13!3;DOID:4045!2.87e-13!3;DOID:0050686!7.66e-07!6|ontology_enrichment_disease_v019_2=DOID:0060100,5.70e-30,3;DOID:4045,5.70e-30,3;DOID:0050686,2.24e-15,6|ontology_enrichment_uberon=UBERON:0002384!7.87e-14!46|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.79e-10,9;UBERON:0002036,1.79e-10,9;UBERON:0002385,1.79e-10,9;UBERON:0000486,1.79e-10,9;UBERON:0007503,1.79e-10,9;UBERON:0001015,1.79e-10,9;UBERON:0002329,1.79e-10,9;UBERON:0003082,1.79e-10,9;UBERON:0003059,1.79e-10,9;UBERON:0007282,1.79e-10,9;UBERON:0004290,1.79e-10,9;UBERON:0009618,1.79e-10,9;UBERON:0000383,1.73e-09,10;UBERON:0007524,1.11e-08,11;UBERON:0003077,1.11e-08,11;UBERON:0007285,1.11e-08,11|phase1_expression=0,0,0,0,0,0,0,1.03298658753261,0.140788722151667,0.234064526321993,0,0,1.71200729931206,0.961624426608971,0,0,0,0.946386496074713,0.274228867211478,0.42438965179803,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2300754450549,1.5626706890476,4.71171369576418,26.4704169613956,2.04913645487534,4.85510353031154,0,0,0,0,0,0,0,0,0,0.671130424230945,1.45072428402269,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233753804363138,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr13:24705519..24705547,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:24705519..24705547,- | |||
|description=CAGE_peak_at_chr13:24705519..24705547,- | |||
|id=chr13:24705519..24705547,- | |||
|ontology_enrichment_celltype=CL:0000838!9.15e-25!12;CL:0000542!9.24e-23!13;CL:0000051!9.24e-23!13;CL:0000084!1.93e-21!11;CL:0000827!1.93e-21!11;CL:0000988!5.80e-21!32;CL:0002032!5.80e-21!32;CL:0000037!5.80e-21!32;CL:0000566!5.80e-21!32;CL:0000837!5.80e-21!32;CL:0000791!1.39e-20!9;CL:0000789!1.39e-20!9;CL:0002420!1.39e-20!9;CL:0002419!1.39e-20!9;CL:0000790!1.39e-20!9;CL:0002031!3.67e-20!25;CL:0000624!3.37e-17!8;CL:0000738!4.27e-17!17;CL:0002087!4.27e-17!17;CL:0002320!7.87e-14!46;CL:0000134!7.87e-14!46;CL:0000219!2.06e-11!54;CL:0000893!1.70e-10!6;CL:0002489!1.70e-10!6;CL:0000898!1.70e-10!6;CL:0000809!1.70e-10!6;CL:0000810!1.70e-10!6;CL:0000895!1.70e-10!6;CL:0000808!1.70e-10!6;CL:0000894!1.70e-10!6;CL:0000806!1.70e-10!6;CL:0000807!1.70e-10!6;CL:0000805!1.70e-10!6;CL:0002425!1.70e-10!6;CL:0002436!1.70e-10!6;CL:0002427!1.70e-10!6;CL:0002428!1.70e-10!6;CL:0002429!1.70e-10!6;CL:0002433!1.70e-10!6;CL:0002431!1.70e-10!6;CL:0002432!1.70e-10!6;CL:0000723!2.29e-09!91;CL:0000048!2.29e-09!91;CL:0000063!6.99e-09!66;CL:0000034!1.35e-08!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.41e-11,8;CL:0000815,1.12e-10,1;CL:0000792,1.12e-10,1;CL:0000355,1.79e-10,9;CL:0000791,3.72e-10,9;CL:0000789,3.72e-10,9;CL:0002420,3.72e-10,9;CL:0002419,3.72e-10,9;CL:0000790,3.72e-10,9;CL:0000084,2.02e-08,11;CL:0000827,2.02e-08,11;CL:0000838,9.06e-08,12;CL:0000542,3.24e-07,13;CL:0000051,3.24e-07,13 | |||
|ontology_enrichment_disease=DOID:0060100!2.87e-13!3;DOID:4045!2.87e-13!3;DOID:0050686!7.66e-07!6 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,5.70e-30,3;DOID:4045,5.70e-30,3;DOID:0050686,2.24e-15,6 | |||
|ontology_enrichment_uberon=UBERON:0002384!7.87e-14!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.79e-10,9;UBERON:0002036,1.79e-10,9;UBERON:0002385,1.79e-10,9;UBERON:0000486,1.79e-10,9;UBERON:0007503,1.79e-10,9;UBERON:0001015,1.79e-10,9;UBERON:0002329,1.79e-10,9;UBERON:0003082,1.79e-10,9;UBERON:0003059,1.79e-10,9;UBERON:0007282,1.79e-10,9;UBERON:0004290,1.79e-10,9;UBERON:0009618,1.79e-10,9;UBERON:0000383,1.73e-09,10;UBERON:0007524,1.11e-08,11;UBERON:0003077,1.11e-08,11;UBERON:0007285,1.11e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,1.03298658753261,0.140788722151667,0.234064526321993,0,0,1.71200729931206,0.961624426608971,0,0,0,0.946386496074713,0.274228867211478,0.42438965179803,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2300754450549,1.5626706890476,4.71171369576418,26.4704169613956,2.04913645487534,4.85510353031154,0,0,0,0,0,0,0,0,0,0.671130424230945,1.45072428402269,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233753804363138,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:24705519..24705547,- | |||
}} |
Latest revision as of 20:05, 5 August 2015
Short description: | p@chr13:24705519..24705547, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:24705519..24705547, - |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.41e-11 | 8 |
regulatory T cell | 1.12e-10 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.12e-10 | 1 |
multi-potent skeletal muscle stem cell | 1.79e-10 | 9 |
mature alpha-beta T cell | 3.72e-10 | 9 |
alpha-beta T cell | 3.72e-10 | 9 |
immature T cell | 3.72e-10 | 9 |
mature T cell | 3.72e-10 | 9 |
immature alpha-beta T cell | 3.72e-10 | 9 |
T cell | 2.02e-08 | 11 |
pro-T cell | 2.02e-08 | 11 |
lymphoid lineage restricted progenitor cell | 9.06e-08 | 12 |
lymphocyte | 3.24e-07 | 13 |
common lymphoid progenitor | 3.24e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.79e-10 | 9 |
striated muscle tissue | 1.79e-10 | 9 |
muscle tissue | 1.79e-10 | 9 |
multilaminar epithelium | 1.79e-10 | 9 |
epithelial vesicle | 1.79e-10 | 9 |
musculature | 1.79e-10 | 9 |
somite | 1.79e-10 | 9 |
myotome | 1.79e-10 | 9 |
presomitic mesoderm | 1.79e-10 | 9 |
presumptive segmental plate | 1.79e-10 | 9 |
dermomyotome | 1.79e-10 | 9 |
trunk paraxial mesoderm | 1.79e-10 | 9 |
musculature of body | 1.73e-09 | 10 |
dense mesenchyme tissue | 1.11e-08 | 11 |
paraxial mesoderm | 1.11e-08 | 11 |
presumptive paraxial mesoderm | 1.11e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 5.70e-30 | 3 |
muscle cancer | 5.70e-30 | 3 |
organ system cancer | 2.24e-15 | 6 |