FFCP PHASE1:Mm9::chr11:54336453..54336478,+: Difference between revisions
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{{FFCP|EntrezGene=192786|HGNC=|MCL_coexpression_id=7|UniProt=B2RUJ6,Q5NCJ5|association_with_transcript=5bp_to_ENSMUST00000041060,ENSMUST00000050145_5end|description=CAGE_peak_2_at_Rapgef6_5end|id=chr11:54336453..54336478,+|ontology_enrichment_celltype=CL:0000988!1.67e-09!32;CL:0002032!1.67e-09!32;CL:0000037!1.67e-09!32;CL:0000566!1.67e-09!32;CL:0000837!1.67e-09!32;CL:0000838!9.12e-09!12;CL:0000542!2.83e-08!13;CL:0000051!2.83e-08!13;CL:0000084!4.38e-08!11;CL:0000827!4.38e-08!11;CL:0000791!3.01e-07!9;CL:0000789!3.01e-07!9;CL:0002420!3.01e-07!9;CL:0002419!3.01e-07!9;CL:0000790!3.01e-07!9;CL:0002031!8.88e-07!25|ontology_enrichment_celltype_v019_2=CL:0000988,2.73e-11,32;CL:0002032,2.73e-11,32;CL:0000037,2.73e-11,32;CL:0000837,2.73e-11,32;CL:0000838,3.20e-09,12;CL:0000542,1.06e-08,13;CL:0000051,1.06e-08,13;CL:0000084,1.69e-08,11;CL:0000827,1.69e-08,11;CL:0002031,2.65e-08,25;CL:0000791,1.31e-07,9;CL:0000789,1.31e-07,9;CL:0002420,1.31e-07,9;CL:0002419,1.31e-07,9;CL:0000790,1.31e-07,9;CL:0002320,3.84e-07,46;CL:0000134,3.84e-07,46;CL:0000624,5.86e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005911!1.67e-12!69;UBERON:0000490!5.31e-11!66;UBERON:0000926!9.61e-11!193;UBERON:0004120!9.61e-11!193;UBERON:0006603!9.61e-11!193;UBERON:0002405!1.45e-10!70;UBERON:0005057!2.03e-10!51;UBERON:0003929!3.13e-10!55;UBERON:0001007!7.91e-09!128;UBERON:0001555!7.91e-09!128;UBERON:0007026!7.91e-09!128;UBERON:0004119!8.89e-09!130;UBERON:0000925!8.89e-09!130;UBERON:0006595!8.89e-09!130;UBERON:0003081!1.94e-08!88;UBERON:0004921!2.40e-08!126;UBERON:0004185!2.40e-08!126;UBERON:0001041!5.44e-08!92;UBERON:0004177!9.63e-08!29;UBERON:0002193!1.65e-07!48;UBERON:0003104!2.44e-07!131;UBERON:0009142!2.44e-07!131;UBERON:0000065!3.47e-07!41;UBERON:0000077!3.67e-07!97;UBERON:0001048!8.87e-07!147;UBERON:0001004!9.22e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.73e-12,69;UBERON:0000490,4.07e-11,66;UBERON:0003929,3.15e-10,55;UBERON:0001041,7.87e-10,80;UBERON:0003081,1.33e-09,87;UBERON:0001007,1.90e-09,116;UBERON:0001555,1.90e-09,116;UBERON:0007026,1.90e-09,116;UBERON:0002193,2.82e-09,48;UBERON:0002405,2.82e-09,48;UBERON:0004119,3.10e-09,118;UBERON:0000925,3.10e-09,118;UBERON:0006595,3.10e-09,118;UBERON:0004921,6.26e-09,114;UBERON:0000926,9.83e-09,120;UBERON:0004120,9.83e-09,120;UBERON:0006603,9.83e-09,120;UBERON:0002390,3.48e-08,45;UBERON:0003061,3.48e-08,45;UBERON:0004177,3.82e-08,29;UBERON:0005057,3.82e-08,29;UBERON:0001048,4.62e-08,134;UBERON:0000065,3.18e-07,41;UBERON:0002384,3.84e-07,46|phase1_expression=0.480446541314382,2.44282785347553,5.45999087267443,2.72217790176147,4.50806156951712,2.35030980676646,2.80335168714631,16.9151553708465,129.666413101685,121.713553687437,30.3055803759144,20.4216727028061,22.427295620988,14.8614684112296,4.99664642723494,7.69406016081339,0,29.3379813783161,28.1084588891765,33.1023928402464,1.61582251287033,5.26242041364692,4.4403964153619,3.51983330145495,2.2940928106717,1.14846392823004,2.58457197695445,2.80112602491656,1.71021077510736,2.26827116783938,1.10865255327652,8.89042942843484,3.07532393792285,0,2.88851619751275,0.997407872150954,3.67504841272264,23.0192396905299,14.8453715459522,15.7057123192139,20.5881020810855,18.442228093878,17.9638830621527,2.26614272356039,3.95370031756107,2.0190142737785,0.782391344348039,0.218025156380447,0.219686182734472,0.388859798148567,0,0,33.0531733933741,23.9369506863744,19.4934403502629,2.31533492432352,0.286533439938757,1.54701627683233,0,0,0,0.338844532069132,0,0,0,0,0.299600110518405,0,0,0.135005938331691,0,0,0,0.244981598429908,0.0958454710182364,0.919218786610021,0,0.383062014255563,0.153606533256243,0,0,0,0,0.56276261003168,0.15279824777681,0.589257170947335,0.569486723196412,0.372798891650601,1.13589289999776,1.51143120213571,11.0148505706638,3.44169550792555,3.39985666853875,0.539703191637817,1.94932925234301,2.68816132258401,1.68533304158102,0.852151612890289,0.779358013808606,0.70667914902068,0.563373679106722,1.28326477414318,5.09610479413291,0,0.865964164044856,1.01343946190039,1.51657333504435,2.74041311325744,26.1527262483643,1.03909497345377,0.346970653532272,0.913396434936424,0.922461989024234,0.60289056221049,1.76383060703557,0.125666591329675,0.494389935468748,2.31358971071859,6.19227386364912,1.29413479957927,2.42925670306433,3.39412677194655,0,0.585561594023094,0.41889341362691,1.27728527604296,12.1013275750979,11.3981518888747,8.25956475974921,0.149790639404823,0.457500602818626,0.628271760564322,0.347648640384553,0.767146371990992,0.20778804455956,0.811206315338788,1.73126918545538,6.22034853050465,5.05445516867349,0.210441855886474,0.260240885925407,0.229902104433473,0.360124259610698,0.60281927134286,1.42876648217788,0.384341160854549,0.281105173679186,0.258703370739016,0.215567992932842,0.567318240503458,0.703804496655795,1.31517439456545,1.11218899690239,2.089512999133,1.4404749548556,1.39323986772945,6.31991868581911,10.0365683774739,5.96743348730745,1.65700618028402,1.1726302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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:192786 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B2RUJ6,uniprot:Q5NCJ5 | |||
|association_with_transcript=5bp_to_ENSMUST00000041060,ENSMUST00000050145_5end | |||
|cluster_id=chr11:54336453..54336478,+ | |||
|description=CAGE_peak_2_at_Rapgef6_5end | |||
|id=chr11:54336453..54336478,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.67e-09!32;CL:0002032!1.67e-09!32;CL:0000037!1.67e-09!32;CL:0000566!1.67e-09!32;CL:0000837!1.67e-09!32;CL:0000838!9.12e-09!12;CL:0000542!2.83e-08!13;CL:0000051!2.83e-08!13;CL:0000084!4.38e-08!11;CL:0000827!4.38e-08!11;CL:0000791!3.01e-07!9;CL:0000789!3.01e-07!9;CL:0002420!3.01e-07!9;CL:0002419!3.01e-07!9;CL:0000790!3.01e-07!9;CL:0002031!8.88e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.73e-11,32;CL:0002032,2.73e-11,32;CL:0000037,2.73e-11,32;CL:0000837,2.73e-11,32;CL:0000838,3.20e-09,12;CL:0000542,1.06e-08,13;CL:0000051,1.06e-08,13;CL:0000084,1.69e-08,11;CL:0000827,1.69e-08,11;CL:0002031,2.65e-08,25;CL:0000791,1.31e-07,9;CL:0000789,1.31e-07,9;CL:0002420,1.31e-07,9;CL:0002419,1.31e-07,9;CL:0000790,1.31e-07,9;CL:0002320,3.84e-07,46;CL:0000134,3.84e-07,46;CL:0000624,5.86e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005911!1.67e-12!69;UBERON:0000490!5.31e-11!66;UBERON:0000926!9.61e-11!193;UBERON:0004120!9.61e-11!193;UBERON:0006603!9.61e-11!193;UBERON:0002405!1.45e-10!70;UBERON:0005057!2.03e-10!51;UBERON:0003929!3.13e-10!55;UBERON:0001007!7.91e-09!128;UBERON:0001555!7.91e-09!128;UBERON:0007026!7.91e-09!128;UBERON:0004119!8.89e-09!130;UBERON:0000925!8.89e-09!130;UBERON:0006595!8.89e-09!130;UBERON:0003081!1.94e-08!88;UBERON:0004921!2.40e-08!126;UBERON:0004185!2.40e-08!126;UBERON:0001041!5.44e-08!92;UBERON:0004177!9.63e-08!29;UBERON:0002193!1.65e-07!48;UBERON:0003104!2.44e-07!131;UBERON:0009142!2.44e-07!131;UBERON:0000065!3.47e-07!41;UBERON:0000077!3.67e-07!97;UBERON:0001048!8.87e-07!147;UBERON:0001004!9.22e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.73e-12,69;UBERON:0000490,4.07e-11,66;UBERON:0003929,3.15e-10,55;UBERON:0001041,7.87e-10,80;UBERON:0003081,1.33e-09,87;UBERON:0001007,1.90e-09,116;UBERON:0001555,1.90e-09,116;UBERON:0007026,1.90e-09,116;UBERON:0002193,2.82e-09,48;UBERON:0002405,2.82e-09,48;UBERON:0004119,3.10e-09,118;UBERON:0000925,3.10e-09,118;UBERON:0006595,3.10e-09,118;UBERON:0004921,6.26e-09,114;UBERON:0000926,9.83e-09,120;UBERON:0004120,9.83e-09,120;UBERON:0006603,9.83e-09,120;UBERON:0002390,3.48e-08,45;UBERON:0003061,3.48e-08,45;UBERON:0004177,3.82e-08,29;UBERON:0005057,3.82e-08,29;UBERON:0001048,4.62e-08,134;UBERON:0000065,3.18e-07,41;UBERON:0002384,3.84e-07,46 | |||
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| |||
|short_description=p2@Rapgef6 | |||
}} |
Revision as of 02:19, 6 August 2015
Short description: | p2@Rapgef6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rapgef6_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 5bp_to_ENSMUST00000041060, ENSMUST00000050145_5end |
EntrezGene: | 192786 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.73e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.73e-11 | 32 |
hematopoietic stem cell | 2.73e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.73e-11 | 32 |
lymphoid lineage restricted progenitor cell | 3.20e-09 | 12 |
lymphocyte | 1.06e-08 | 13 |
common lymphoid progenitor | 1.06e-08 | 13 |
T cell | 1.69e-08 | 11 |
pro-T cell | 1.69e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 2.65e-08 | 25 |
mature alpha-beta T cell | 1.31e-07 | 9 |
alpha-beta T cell | 1.31e-07 | 9 |
immature T cell | 1.31e-07 | 9 |
mature T cell | 1.31e-07 | 9 |
immature alpha-beta T cell | 1.31e-07 | 9 |
connective tissue cell | 3.84e-07 | 46 |
mesenchymal cell | 3.84e-07 | 46 |
CD4-positive, alpha-beta T cell | 5.86e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 1.73e-12 | 69 |
unilaminar epithelium | 4.07e-11 | 66 |
gut epithelium | 3.15e-10 | 55 |
foregut | 7.87e-10 | 80 |
lateral plate mesoderm | 1.33e-09 | 87 |
digestive system | 1.90e-09 | 116 |
digestive tract | 1.90e-09 | 116 |
primitive gut | 1.90e-09 | 116 |
hemolymphoid system | 2.82e-09 | 48 |
immune system | 2.82e-09 | 48 |
endoderm-derived structure | 3.10e-09 | 118 |
endoderm | 3.10e-09 | 118 |
presumptive endoderm | 3.10e-09 | 118 |
subdivision of digestive tract | 6.26e-09 | 114 |
mesoderm | 9.83e-09 | 120 |
mesoderm-derived structure | 9.83e-09 | 120 |
presumptive mesoderm | 9.83e-09 | 120 |
hematopoietic system | 3.48e-08 | 45 |
blood island | 3.48e-08 | 45 |
hemopoietic organ | 3.82e-08 | 29 |
immune organ | 3.82e-08 | 29 |
primordium | 4.62e-08 | 134 |
respiratory tract | 3.18e-07 | 41 |
connective tissue | 3.84e-07 | 46 |