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MCL coexpression mm9:2906

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Phase1 CAGE Peaks

 Short description
Mm9::chr14:37781933..37781952,-p2@Gcap14
Mm9::chr14:37781955..37781979,-p3@Gcap14
Mm9::chr15:31460836..31460847,-p5@March6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.09e-1323
neuroblast (sensu Vertebrata)2.09e-1323
neuron6.47e-1033
neuronal stem cell6.47e-1033
neuroblast6.47e-1033
electrically signaling cell6.47e-1033
electrically responsive cell9.49e-0839
electrically active cell9.49e-0839

Uber Anatomy
Ontology termp-valuen
gray matter1.26e-1634
regional part of nervous system8.93e-1654
neural tube1.94e-1452
neural rod1.94e-1452
future spinal cord1.94e-1452
neural keel1.94e-1452
brain grey matter1.09e-1329
regional part of telencephalon1.09e-1329
telencephalon1.09e-1329
central nervous system3.35e-1373
nervous system3.46e-1375
neurectoderm1.68e-1264
neural plate1.68e-1264
presumptive neural plate1.68e-1264
brain1.20e-1147
future brain1.20e-1147
ectoderm-derived structure1.82e-1195
ectoderm1.82e-1195
presumptive ectoderm1.82e-1195
regional part of brain3.42e-1146
anterior neural tube4.26e-1140
ecto-epithelium5.16e-1173
regional part of forebrain1.27e-1039
forebrain1.27e-1039
future forebrain1.27e-1039
pre-chordal neural plate5.28e-1049
structure with developmental contribution from neural crest6.28e-1092
cerebral cortex1.65e-0921
cerebral hemisphere1.65e-0921
pallium1.65e-0921
regional part of cerebral cortex1.59e-0717
organ part2.75e-0799
occipital lobe6.77e-0710
visual cortex6.77e-0710
neocortex6.77e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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