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MCL coexpression mm9:2265

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Phase1 CAGE Peaks

 Short description
Mm9::chr19:46119797..46119808,-p11@Ldb1
Mm9::chr19:46119821..46119837,-p8@Ldb1
Mm9::chr19:46119839..46119850,-p13@Ldb1
Mm9::chr19:46119852..46119876,-p7@Ldb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.24e-0823
neuroblast (sensu Vertebrata)1.24e-0823
neuron9.20e-0733
neuronal stem cell9.20e-0733
neuroblast9.20e-0733
electrically signaling cell9.20e-0733

Uber Anatomy
Ontology termp-valuen
gray matter1.46e-1634
neurectoderm6.59e-1664
neural plate6.59e-1664
presumptive neural plate6.59e-1664
neural tube1.73e-1552
neural rod1.73e-1552
future spinal cord1.73e-1552
neural keel1.73e-1552
regional part of nervous system6.91e-1554
ecto-epithelium1.70e-1473
brain grey matter2.44e-1429
regional part of telencephalon2.44e-1429
telencephalon2.44e-1429
brain5.31e-1447
future brain5.31e-1447
central nervous system6.79e-1473
regional part of brain2.37e-1346
pre-chordal neural plate3.52e-1349
ectoderm-derived structure5.64e-1395
ectoderm5.64e-1395
presumptive ectoderm5.64e-1395
anterior neural tube1.06e-1240
nervous system1.16e-1275
regional part of forebrain2.16e-1239
forebrain2.16e-1239
future forebrain2.16e-1239
cerebral cortex1.18e-1121
cerebral hemisphere1.18e-1121
pallium1.18e-1121
structure with developmental contribution from neural crest2.78e-0992
regional part of cerebral cortex2.80e-0917
occipital lobe1.57e-0710
visual cortex1.57e-0710
neocortex1.57e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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