Personal tools

Coexpression cluster:C71

From FANTOM5_SSTAR

Jump to: navigation, search


Full id: C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate



Phase1 CAGE Peaks

Hg19::chr10:73576479..73576520,-p@chr10:73576479..73576520
-
Hg19::chr10:73576587..73576627,-p@chr10:73576587..73576627
-
Hg19::chr10:73576634..73576697,-p@chr10:73576634..73576697
-
Hg19::chr10:73576748..73576784,-p@chr10:73576748..73576784
-
Hg19::chr10:73576943..73576992,-p@chr10:73576943..73576992
-
Hg19::chr10:73577115..73577138,-p@chr10:73577115..73577138
-
Hg19::chr10:73577179..73577199,-p@chr10:73577179..73577199
-
Hg19::chr10:73578407..73578437,-p@chr10:73578407..73578437
-
Hg19::chr10:73578451..73578484,-p@chr10:73578451..73578484
-
Hg19::chr10:73579349..73579361,-p12@PSAP
Hg19::chr10:73579502..73579547,-p8@PSAP
Hg19::chr10:73587869..73587888,-p10@PSAP
Hg19::chr10:73587891..73587911,-p7@PSAP
Hg19::chr10:73588734..73588747,-p@chr10:73588734..73588747
-
Hg19::chr10:73594214..73594228,-p@chr10:73594214..73594228
-
Hg19::chr10:90973626..90973639,-p@chr10:90973626..90973639
-
Hg19::chr10:90973693..90973714,-p@chr10:90973693..90973714
-
Hg19::chr10:90973819..90973831,-p@chr10:90973819..90973831
-
Hg19::chr10:90974066..90974077,-p@chr10:90974066..90974077
-
Hg19::chr10:90974131..90974169,-p@chr10:90974131..90974169
-
Hg19::chr10:90974711..90974729,-p@chr10:90974711..90974729
-
Hg19::chr10:91015076..91015080,-p@chr10:91015076..91015080
-
Hg19::chr11:1774064..1774105,-p@chr11:1774064..1774105
-
Hg19::chr11:1774498..1774510,-p@chr11:1774498..1774510
-
Hg19::chr11:1774658..1774701,+p1@CU677606
Hg19::chr11:1774749..1774770,+p3@CU677606
Hg19::chr11:1774801..1774823,-p@chr11:1774801..1774823
-
Hg19::chr11:1774825..1774836,-p@chr11:1774825..1774836
-
Hg19::chr11:1774844..1774871,-p@chr11:1774844..1774871
-
Hg19::chr11:1775060..1775078,+p@chr11:1775060..1775078
+
Hg19::chr11:1775060..1775079,-p@chr11:1775060..1775079
-
Hg19::chr11:1775091..1775120,-p@chr11:1775091..1775120
-
Hg19::chr11:1775126..1775138,-p@chr11:1775126..1775138
-
Hg19::chr11:1775243..1775259,-p@chr11:1775243..1775259
-
Hg19::chr11:1775310..1775334,-p@chr11:1775310..1775334
-
Hg19::chr11:1775341..1775367,-p@chr11:1775341..1775367
-
Hg19::chr11:1776214..1776241,-p5@CTSD
Hg19::chr11:1778687..1778733,-p4@CTSD
Hg19::chr11:1778761..1778780,-p7@CTSD
Hg19::chr11:1780220..1780247,-p@chr11:1780220..1780247
-
Hg19::chr11:1780261..1780321,-p1@ENST00000427721
Hg19::chr11:1782603..1782619,-p@chr11:1782603..1782619
-
Hg19::chr11:1782625..1782656,-p@chr11:1782625..1782656
-
Hg19::chr11:58977610..58977614,-p@chr11:58977610..58977614
-
Hg19::chr11:61129827..61129874,+p1@TMEM138
Hg19::chr11:6635181..6635193,-p@chr11:6635181..6635193
-
Hg19::chr11:6635265..6635378,-p@chr11:6635265..6635378
-
Hg19::chr11:6635379..6635461,-p@chr11:6635379..6635461
-
Hg19::chr11:6635464..6635489,-p@chr11:6635464..6635489
-
Hg19::chr11:6635581..6635603,-p@chr11:6635581..6635603
-
Hg19::chr11:6635612..6635641,-p@chr11:6635612..6635641
-
Hg19::chr11:6635655..6635679,-p@chr11:6635655..6635679
-
Hg19::chr11:6635712..6635734,-p@chr11:6635712..6635734
-
Hg19::chr11:6635737..6635756,+p1@CU677100
Hg19::chr11:6635738..6635779,-p@chr11:6635738..6635779
-
Hg19::chr11:6635815..6635831,-p@chr11:6635815..6635831
-
Hg19::chr11:71709899..71709904,+p11@IL18BP
Hg19::chr11:71711506..71711524,+p@chr11:71711506..71711524
+
Hg19::chr11:71712835..71712858,+p4@IL18BP
Hg19::chr11:71712896..71712913,+p3@IL18BP
Hg19::chr11:71712944..71712962,+p10@IL18BP
Hg19::chr11:73685823..73685840,+p3@CU680035
Hg19::chr12:6929602..6929617,+p@chr12:6929602..6929617
+
Hg19::chr12:7651740..7651752,-p@chr12:7651740..7651752
-
Hg19::chr12:7653778..7653791,-p@chr12:7653778..7653791
-
Hg19::chr13:103052822..103052832,+p@chr13:103052822..103052832
+
Hg19::chr13:111115632..111115634,-p1@COL4A2-AS2
Hg19::chr14:21269756..21269773,-p10@RNASE1
Hg19::chr14:21269929..21269939,-p11@RNASE1
Hg19::chr14:21270019..21270028,-p12@RNASE1
Hg19::chr14:74946794..74946851,-p1@MIR4709
Hg19::chr14:93176153..93176178,-p@chr14:93176153..93176178
-
Hg19::chr14:93179177..93179188,-p6@LGMN
Hg19::chr14:93182505..93182508,-p@chr14:93182505..93182508
-
Hg19::chr14:93214962..93214979,-p1@LGMN
Hg19::chr15:79217748..79217762,-p@chr15:79217748..79217762
-
Hg19::chr15:79229733..79229748,-p4@CTSH
Hg19::chr17:37949522..37949523,+p@chr17:37949522..37949523
+
Hg19::chr17:42429816..42429828,+p@chr17:42429816..42429828
+
Hg19::chr17:42429879..42429924,-p1@BC127696
Hg19::chr17:42430024..42430037,+p@chr17:42430024..42430037
+
Hg19::chr17:42430205..42430221,+p@chr17:42430205..42430221
+
Hg19::chr17:7483746..7483753,+p@chr17:7483746..7483753
+
Hg19::chr17:7484033..7484055,+p@chr17:7484033..7484055
+
Hg19::chr17:7484875..7484887,+p@chr17:7484875..7484887
+
Hg19::chr19:11687914..11687926,-p10@ACP5
Hg19::chr19:18288003..18288038,+p@chr19:18288003..18288038
+
Hg19::chr19:18288064..18288080,+p@chr19:18288064..18288080
+
Hg19::chr19:18288514..18288554,+p6@IFI30
Hg19::chr19:18288780..18288808,+p4@IFI30
Hg19::chr19:35773242..35773257,+p3@HAMP
Hg19::chr19:35773262..35773314,+p2@HAMP
Hg19::chr19:40873627..40873641,+p@chr19:40873627..40873641
+
Hg19::chr19:40877583..40877609,+p7@PLD3
Hg19::chr19:4357364..4357367,+p@chr19:4357364..4357367
+
Hg19::chr19:45422516..45422534,+p@chr19:45422516..45422534
+
Hg19::chr19:49469610..49469651,+p@chr19:49469610..49469651
+
Hg19::chr19:49469870..49469884,+p@chr19:49469870..49469884
+
Hg19::chr19:49469894..49469928,+p@chr19:49469894..49469928
+
Hg19::chr19:52327915..52327926,+p@chr19:52327915..52327926
+
Hg19::chr1:110473205..110473218,+p@chr1:110473205..110473218
+
Hg19::chr1:160535230..160535238,-p@chr1:160535230..160535238
-
Hg19::chr1:161188661..161188679,+p@chr1:161188661..161188679
+
Hg19::chr1:201272002..201272005,-p@chr1:201272002..201272005
-
Hg19::chr1:24172598..24172603,-p@chr1:24172598..24172603
-
Hg19::chr1:24181014..24181027,-p@chr1:24181014..24181027
-
Hg19::chr1:24192072..24192082,-p@chr1:24192072..24192082
-
Hg19::chr1:6161022..6161037,+p@chr1:6161022..6161037
+
Hg19::chr20:35488267..35488271,+p@chr20:35488267..35488271
+
Hg19::chr20:4004776..4004790,+p2@FTLP3
Hg19::chr20:44637507..44637523,+p2@MMP9
Hg19::chr20:44638500..44638512,+p@chr20:44638500..44638512
+
Hg19::chr20:44638515..44638530,+p@chr20:44638515..44638530
+
Hg19::chr20:44638551..44638562,+p@chr20:44638551..44638562
+
Hg19::chr20:44638566..44638579,+p@chr20:44638566..44638579
+
Hg19::chr20:44638613..44638632,+p@chr20:44638613..44638632
+
Hg19::chr20:44638657..44638691,+p@chr20:44638657..44638691
+
Hg19::chr20:44638694..44638710,+p@chr20:44638694..44638710
+
Hg19::chr20:44638717..44638738,-p@chr20:44638717..44638738
-
Hg19::chr20:44639118..44639130,+p@chr20:44639118..44639130
+
Hg19::chr20:44639141..44639152,-p@chr20:44639141..44639152
-
Hg19::chr20:44639149..44639161,+p@chr20:44639149..44639161
+
Hg19::chr20:44639171..44639178,+p@chr20:44639171..44639178
+
Hg19::chr20:44639194..44639223,+p@chr20:44639194..44639223
+
Hg19::chr20:44639584..44639604,+p@chr20:44639584..44639604
+
Hg19::chr20:44639616..44639619,+p@chr20:44639616..44639619
+
Hg19::chr20:44639634..44639645,+p@chr20:44639634..44639645
+
Hg19::chr20:44639771..44639782,+p@chr20:44639771..44639782
+
Hg19::chr20:44639805..44639831,+p@chr20:44639805..44639831
+
Hg19::chr20:44639836..44639854,+p@chr20:44639836..44639854
+
Hg19::chr20:44639864..44639892,+p@chr20:44639864..44639892
+
Hg19::chr20:44639896..44639903,+p@chr20:44639896..44639903
+
Hg19::chr20:44639906..44639917,+p@chr20:44639906..44639917
+
Hg19::chr20:44639910..44639947,-p@chr20:44639910..44639947
-
Hg19::chr20:44639929..44639935,+p@chr20:44639929..44639935
+
Hg19::chr20:44640241..44640245,-p@chr20:44640241..44640245
-
Hg19::chr20:44640269..44640283,+p7@MMP9
Hg19::chr20:44640304..44640310,+p13@MMP9
Hg19::chr20:44640312..44640322,+p10@MMP9
Hg19::chr20:44640347..44640359,+p11@MMP9
Hg19::chr20:44640803..44640826,+p3@MMP9
Hg19::chr20:44640829..44640856,+p4@MMP9
Hg19::chr20:44640873..44640902,+p@chr20:44640873..44640902
+
Hg19::chr20:44641061..44641077,+p@chr20:44641061..44641077
+
Hg19::chr20:44641085..44641097,+p@chr20:44641085..44641097
+
Hg19::chr20:44641109..44641122,+p@chr20:44641109..44641122
+
Hg19::chr20:44641138..44641146,+p@chr20:44641138..44641146
+
Hg19::chr20:44641166..44641180,+p@chr20:44641166..44641180
+
Hg19::chr20:44641953..44641968,+p@chr20:44641953..44641968
+
Hg19::chr20:44642333..44642369,+p@chr20:44642333..44642369
+
Hg19::chr20:57570289..57570299,-p@chr20:57570289..57570299
-
Hg19::chr20:57570804..57570821,-p@chr20:57570804..57570821
-
Hg19::chr20:57571726..57571740,-p@chr20:57571726..57571740
-
Hg19::chr20:57571742..57571753,-p@chr20:57571742..57571753
-
Hg19::chr20:57571798..57571819,-p@chr20:57571798..57571819
-
Hg19::chr20:57571822..57571834,-p@chr20:57571822..57571834
-
Hg19::chr20:57572713..57572734,-p4@CTSZ
Hg19::chr20:57576512..57576549,+p@chr20:57576512..57576549
+
Hg19::chr20:57576573..57576591,-p@chr20:57576573..57576591
-
Hg19::chr20:57576595..57576610,-p@chr20:57576595..57576610
-
Hg19::chr20:57576634..57576649,-p@chr20:57576634..57576649
-
Hg19::chr20:57576662..57576680,+p@chr20:57576662..57576680
+
Hg19::chr20:57576663..57576679,-p@chr20:57576663..57576679
-
Hg19::chr20:57581400..57581407,-p7@CTSZ
Hg19::chr20:57581464..57581474,-p8@CTSZ
Hg19::chr20:57581518..57581550,-p3@CTSZ
Hg19::chr21:45194559..45194611,-p@chr21:45194559..45194611
-
Hg19::chr22:17661395..17661415,-p@chr22:17661395..17661415
-
Hg19::chr2:120125783..120125803,+p2@DBI
Hg19::chr2:85628691..85628713,-p9@CAPG
Hg19::chr2:85628754..85628782,-p8@CAPG
Hg19::chr3:158546800..158546806,+p@chr3:158546800..158546806
+
Hg19::chr3:9758708..9758722,+p@chr3:9758708..9758722
+
Hg19::chr4:26433638..26433663,+p@chr4:26433638..26433663
+
Hg19::chr5:150639431..150639450,+p8@GM2A
Hg19::chr5:150646304..150646337,+p@chr5:150646304..150646337
+
Hg19::chr5:150646409..150646437,+p@chr5:150646409..150646437
+
Hg19::chr5:150646897..150646939,+p@chr5:150646897..150646939
+
Hg19::chr5:150646966..150646980,+p@chr5:150646966..150646980
+
Hg19::chr5:150647000..150647027,+p@chr5:150647000..150647027
+
Hg19::chr5:150647079..150647092,+p@chr5:150647079..150647092
+
Hg19::chr5:150647096..150647119,+p@chr5:150647096..150647119
+
Hg19::chr5:150647233..150647242,+p@chr5:150647233..150647242
+
Hg19::chr5:150647245..150647268,+p@chr5:150647245..150647268
+
Hg19::chr5:150647383..150647397,+p@chr5:150647383..150647397
+
Hg19::chr5:150647424..150647447,+p@chr5:150647424..150647447
+
Hg19::chr5:150647455..150647492,+p@chr5:150647455..150647492
+
Hg19::chr5:150647578..150647589,+p@chr5:150647578..150647589
+
Hg19::chr5:150647622..150647708,+p@chr5:150647622..150647708
+
Hg19::chr5:150648469..150648481,+p15@GM2A
Hg19::chr6:134493391..134493422,-p29@SGK1
Hg19::chr6:137106709..137106722,+p@chr6:137106709..137106722
+
Hg19::chr6:41691289..41691312,-p9@TFEB
Hg19::chr6:46666704..46666713,-p@chr6:46666704..46666713
-
Hg19::chr6:46673031..46673038,-p@chr6:46673031..46673038
-
Hg19::chr6:46684758..46684771,-p@chr6:46684758..46684771
-
Hg19::chr7:128582226..128582238,+p7@IRF5
Hg19::chr7:23293783..23293819,+p@chr7:23293783..23293819
+
Hg19::chr7:23293830..23293872,+p@chr7:23293830..23293872
+
Hg19::chr7:23296511..23296525,+p@chr7:23296511..23296525
+
Hg19::chr7:23296584..23296598,+p@chr7:23296584..23296598
+
Hg19::chr7:23296612..23296636,+p@chr7:23296612..23296636
+
Hg19::chr7:23296645..23296661,+p@chr7:23296645..23296661
+
Hg19::chr7:23299616..23299627,+p@chr7:23299616..23299627
+
Hg19::chr7:23299631..23299647,+p@chr7:23299631..23299647
+
Hg19::chr7:23299660..23299676,+p@chr7:23299660..23299676
+
Hg19::chr7:23299706..23299719,+p@chr7:23299706..23299719
+
Hg19::chr7:23300071..23300080,+p@chr7:23300071..23300080
+
Hg19::chr7:23300125..23300137,+p@chr7:23300125..23300137
+
Hg19::chr7:23300220..23300250,+p@chr7:23300220..23300250
+
Hg19::chr7:23300331..23300358,+p@chr7:23300331..23300358
+
Hg19::chr7:23300355..23300393,-p@chr7:23300355..23300393
-
Hg19::chr7:23309611..23309632,+p6@GPNMB
Hg19::chr7:23309707..23309722,+p4@GPNMB
Hg19::chr7:23309737..23309748,+p10@GPNMB
Hg19::chr7:23313917..23313928,+p@chr7:23313917..23313928
+
Hg19::chr7:23313997..23314023,+p@chr7:23313997..23314023
+
Hg19::chr7:99798099..99798128,+p7@STAG3
Hg19::chr8:11700029..11700043,+p@chr8:11700029..11700043
+
Hg19::chr8:11700092..11700121,-p@chr8:11700092..11700121
-
Hg19::chr8:11701862..11701910,-p4@AK098296
Hg19::chr8:11701938..11701982,-p2@AK098296
Hg19::chr8:11702014..11702044,-p3@AK098296
Hg19::chr8:11702074..11702085,-p7@AK098296
Hg19::chr8:11702131..11702148,-p5@AK098296
Hg19::chr8:11702188..11702212,+p@chr8:11702188..11702212
+
Hg19::chr8:11702232..11702287,-p1@AK098296
Hg19::chr8:11702293..11702328,+p@chr8:11702293..11702328
+
Hg19::chr8:11702374..11702395,-p@chr8:11702374..11702395
-
Hg19::chr8:11702400..11702427,-p@chr8:11702400..11702427
-
Hg19::chr8:11702431..11702466,-p@chr8:11702431..11702466
-
Hg19::chr8:11702470..11702503,-p@chr8:11702470..11702503
-
Hg19::chr8:11702539..11702605,-p@chr8:11702539..11702605
-
Hg19::chr8:11702613..11702650,-p@chr8:11702613..11702650
-
Hg19::chr8:11702661..11702681,-p@chr8:11702661..11702681
-
Hg19::chr8:11702710..11702739,-p@chr8:11702710..11702739
-
Hg19::chr8:11703197..11703242,-p@chr8:11703197..11703242
-
Hg19::chr8:11704585..11704608,-p2@AK128472
Hg19::chr8:11704618..11704686,-p1@AK128472
Hg19::chr8:11705244..11705269,-p6@CTSB
Hg19::chr8:11705305..11705335,-p5@CTSB
Hg19::chr8:11705641..11705670,-p4@CTSB
Hg19::chr8:11706585..11706619,-p2@CTSB
Hg19::chr8:11706630..11706647,-p9@CTSB
Hg19::chr8:11706648..11706676,-p7@CTSB
Hg19::chr8:11708428..11708450,-p@chr8:11708428..11708450
-
Hg19::chr8:11708451..11708497,-p@chr8:11708451..11708497
-
Hg19::chr8:11710154..11710178,-p@chr8:11710154..11710178
-
Hg19::chr8:11710182..11710212,-p@chr8:11710182..11710212
-
Hg19::chr8:11710979..11710993,-p11@CTSB
Hg19::chr8:16050288..16050299,-p4@MSR1
Hg19::chr9:97367777..97367783,-p@chr9:97367777..97367783
-
Hg19::chrX:30648756..30648775,+p2@FTLP2
Hg19::chrX:37672478..37672492,+p@chrX:37672478..37672492
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
3.8301284794605e-142.4244713274985e-118121Lysosome (KEGG):04142
3.34125815597961e-050.00528754103183774378Antigen processing and presentation (KEGG):04612
6.61023887274438e-050.00836856241289439398EGFR1 down reg. targets (Netpath):NetPath_4
2.05892215321743e-050.004344325743288776740TGF beta receptor down reg. targets (Netpath):NetPath_7
1.1735530280982e-060.000371429533393079326{CTSB,26} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005764lysosome1.0480335735187e-12
GO:0000323lytic vacuole1.0480335735187e-12
GO:0005773vacuole2.55788396001967e-12
GO:0048770pigment granule2.00977059816662e-05
GO:0042470melanosome2.00977059816662e-05
GO:0004197cysteine-type endopeptidase activity0.000144102989006187
GO:0044444cytoplasmic part0.000543690591520644
GO:0004175endopeptidase activity0.000543690591520644
GO:0016787hydrolase activity0.000695068473515278
GO:0008234cysteine-type peptidase activity0.00148800656465349
GO:0043231intracellular membrane-bound organelle0.00148800656465349
GO:0043227membrane-bound organelle0.00148800656465349
GO:0006687glycosphingolipid metabolic process0.00203212951820557
GO:0016023cytoplasmic membrane-bound vesicle0.00203212951820557
GO:0031988membrane-bound vesicle0.00203212951820557
GO:0008233peptidase activity0.00302605906957373
GO:0006664glycolipid metabolic process0.00324472019915184
GO:0031410cytoplasmic vesicle0.00324472019915184
GO:0005737cytoplasm0.00324472019915184
GO:0031982vesicle0.00324472019915184
GO:0006508proteolysis0.00324472019915184
GO:0042007interleukin-18 binding0.00828775827557786
GO:0030290sphingolipid activator protein activity0.00828775827557786
GO:0032428beta-N-acetylgalactosaminidase activity0.00828775827557786
GO:0004213cathepsin B activity0.00828775827557786
GO:0004192cathepsin D activity0.00828775827557786
GO:0004215cathepsin H activity0.00828775827557786
GO:0004229gelatinase B activity0.00828775827557786
GO:0030984kininogen binding0.00828775827557786
GO:0006665sphingolipid metabolic process0.0115021181945284
GO:0043229intracellular organelle0.0123213930737607
GO:0043226organelle0.0123213930737607
GO:0004098cerebroside-sulfatase activity0.0123213930737607
GO:0005889hydrogen:potassium-exchanging ATPase complex0.0123213930737607
GO:0004557alpha-galactosidase activity0.0123213930737607
GO:0016004phospholipase activator activity0.0123213930737607
GO:0045179apical cortex0.0123213930737607
GO:0030156benzodiazepine receptor binding0.0123213930737607
GO:0009313oligosaccharide catabolic process0.0123213930737607
GO:0045177apical part of cell0.0137390754098811
GO:0005319lipid transporter activity0.0166542704452397
GO:0004336galactosylceramidase activity0.0171563837113442
GO:0004563beta-N-acetylhexosaminidase activity0.0218283282762773
GO:0006689ganglioside catabolic process0.0218283282762773
GO:0046479glycosphingolipid catabolic process0.0255355193792421
GO:0008133collagenase activity0.0255355193792421
GO:0004348glucosylceramidase activity0.0255355193792421
GO:0006869lipid transport0.0266617983691264
GO:0044424intracellular part0.0266617983691264
GO:0008081phosphoric diester hydrolase activity0.0266617983691264
GO:0007130synaptonemal complex assembly0.0266617983691264
GO:0004630phospholipase D activity0.0266617983691264
GO:0009898internal side of plasma membrane0.0266617983691264
GO:0001509legumain activity0.0266617983691264
GO:0016042lipid catabolic process0.0282327712385623
GO:0019377glycolipid catabolic process0.0294364417697988
GO:0007129synapsis0.0294364417697988
GO:0005102receptor binding0.0294364417697988
GO:0005615extracellular space0.0314492967441854
GO:0019915sequestering of lipid0.0314492967441854
GO:0001573ganglioside metabolic process0.0314492967441854
GO:0004767sphingomyelin phosphodiesterase activity0.0337110872120385
GO:0030547receptor inhibitor activity0.0337110872120385
GO:0048019receptor antagonist activity0.0337110872120385
GO:0042578phosphoric ester hydrolase activity0.0360876906578836
GO:0016788hydrolase activity, acting on ester bonds0.0371161970695443
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds0.0371161970695443
GO:0030545receptor regulator activity0.0371161970695443
GO:0003709RNA polymerase III transcription factor activity0.0371161970695443
GO:0030225macrophage differentiation0.0371161970695443
GO:0004565beta-galactosidase activity0.0371161970695443
GO:0042088T-helper 1 type immune response0.0383185081814939
GO:0017040ceramidase activity0.0383185081814939
GO:0015925galactosidase activity0.0383185081814939
GO:0050832defense response to fungus0.0383185081814939
GO:0000795synaptonemal complex0.0409522584277374
GO:0016798hydrolase activity, acting on glycosyl bonds0.0445242020859973
GO:0030149sphingolipid catabolic process0.0460112216962742



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
monopoietic cell2.30e-5659
monocyte2.30e-5659
monoblast2.30e-5659
promonocyte2.30e-5659
macrophage dendritic cell progenitor5.22e-5461
defensive cell6.05e-5448
phagocyte6.05e-5448
myeloid lineage restricted progenitor cell9.65e-4966
granulocyte monocyte progenitor cell8.78e-4867
classical monocyte1.85e-4342
CD14-positive, CD16-negative classical monocyte1.85e-4342
myeloid leukocyte2.18e-4372
stuff accumulating cell1.76e-3287
myeloid cell7.45e-24108
common myeloid progenitor7.45e-24108
nongranular leukocyte1.16e-22115
hematopoietic lineage restricted progenitor cell5.24e-20120
leukocyte6.64e-17136
macrophage3.15e-126
hematopoietic oligopotent progenitor cell2.03e-11161
hematopoietic multipotent progenitor cell2.03e-11161
hematopoietic stem cell4.47e-11168
angioblastic mesenchymal cell4.47e-11168
mesenchymal cell5.17e-10354
hematopoietic cell7.37e-10177
connective tissue cell1.96e-09361
motile cell8.50e-09386
multi fate stem cell2.09e-07427
somatic stem cell4.97e-07433
adult endothelial progenitor cell8.26e-073
Uber Anatomy
Ontology termp-valuen
bone marrow4.60e-4476
bone element1.15e-3982
immune system7.74e-3893
hematopoietic system6.53e-3598
blood island6.53e-3598
skeletal element1.01e-3490
skeletal system3.28e-34100
hemolymphoid system1.09e-31108
musculoskeletal system4.84e-22167
lateral plate mesoderm1.69e-16203
mesoderm3.74e-16315
mesoderm-derived structure3.74e-16315
presumptive mesoderm3.74e-16315
connective tissue3.71e-09371


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.18.71154e-08
MA0004.10.0166162
MA0006.10.0205976
MA0007.11.01934
MA0009.10.235113
MA0014.11.09655e-06
MA0017.10.0363007
MA0019.10.367437
MA0024.10.0466568
MA0025.10.101013
MA0027.12.3874
MA0028.11.47059e-05
MA0029.10.0172463
MA0030.10.0152155
MA0031.10.385497
MA0038.11.46616
MA0040.10.0183561
MA0041.10.000460876
MA0042.10.000172981
MA0043.10.111876
MA0046.10.219742
MA0048.10.123367
MA0050.10.0777679
MA0051.10.328533
MA0052.10.140172
MA0055.10.153512
MA0056.10
MA0057.10.00894898
MA0058.10.0236182
MA0059.10.195022
MA0060.18.45389e-10
MA0061.10.52691
MA0063.10
MA0066.11.47007
MA0067.10.0708046
MA0068.10.00125403
MA0069.11.53659
MA0070.10.199443
MA0071.10.92607
MA0072.10.193589
MA0073.11.00648e-05
MA0074.10.224834
MA0076.10.000762547
MA0077.10.777595
MA0078.10.389838
MA0081.10.345723
MA0083.10.246048
MA0084.10.464164
MA0087.10.343219
MA0088.10.0352715
MA0089.10
MA0090.11.51222
MA0091.10.099566
MA0092.11.05176
MA0093.10.00358943
MA0095.10
MA0098.10
MA0100.10.0630425
MA0101.10.00794223
MA0103.10.676297
MA0105.10.894148
MA0106.11.30938
MA0107.10.0158895
MA0108.20.555551
MA0109.10
MA0111.10.903723
MA0113.10.183483
MA0114.10.505975
MA0115.10.0472101
MA0116.10.0430472
MA0117.10.499614
MA0119.10.0689217
MA0122.10.0639193
MA0124.10.036779
MA0125.10.432182
MA0130.10
MA0131.10.00803363
MA0132.10
MA0133.10
MA0135.10.0499175
MA0136.10.0572829
MA0139.10.00418038
MA0140.10.22034
MA0141.11.11511
MA0142.10.649842
MA0143.11.18534
MA0144.10.200163
MA0145.10.199068
MA0146.12.69848e-05
MA0147.10.00732749
MA0148.10.0512685
MA0149.10.00368955
MA0062.25.43641e-06
MA0035.20.31261
MA0039.22.74833e-15
MA0138.22.09654
MA0002.20.385753
MA0137.20.393516
MA0104.20.00141789
MA0047.20.134377
MA0112.20.718782
MA0065.20.35417
MA0150.10.214063
MA0151.10
MA0152.10.0297139
MA0153.10.0812765
MA0154.10.921495
MA0155.10.946779
MA0156.10.0017061
MA0157.10.37868
MA0158.10
MA0159.11.13
MA0160.10.763189
MA0161.10
MA0162.13.85731e-16
MA0163.19.5431e-05
MA0164.10.452999
MA0080.20.0845029
MA0018.20.021815
MA0099.20.0136834
MA0079.20
MA0102.20.513649
MA0258.10.313745
MA0259.10.0015415
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BCL3#602152.040183236441240.00771654851999330.0317624487005707



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C71&oldid=3067189"