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|coexpression_dpi_cluster_scores_median=0.0300484082731197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257502384358885,0.313441563167376,0.213207239280454,0,0,0,0,0,0,0,0,0.0549981337564001,0,0.745887610145509,0.506327139467406,0.0501827898833331,0,0,0.732766388647999,0.897358529433381,0.834868645659988,0.21995931373127,0.321774788881763,0.182104477852721,0.997117858826398,1.17808631342852,0.993978137410549,0.486061930039393,0.568795472202898,0.326007286088902,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.0396906956236485,0,0,0,0,0,0,0.0893284091371433,0,0.112901225419538,0.129358133846345,0.206537407802916,0.0901223798974778,0.06097065795378,0.131222718281153,0.0514097768499148,0,0,0,0,0,0,0,0.273774759912798,0.264295134298998,0,0,0,0,0.84457816239703,0.516866159673758,0.176848416016191,0.535742172250406,0.445605479897055,0.883617005742416,0.791811337922243,0,0,0,0.0829439327499637,0,0,0,0,0.055406237837571,0.0990682757404326,0.074598306112166,0.0999233952154288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54697173461699,0.116844694267823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787999917067211,0.805618936442092,0,0,0,0,0.0847275925579778,0,0,0,0,0.111348509539896,0,0.466560377831798,0,0,0,0,0,0.0263032485151392,0,0.0750375819757342,0,0.116420155980149,0,0.0665746561212115,0.1324189587654,0,0,0,0.809359939830739,0.0719044921483595,0.0999282245587464,0.15493316250826,0.275703118355611,0.233877840891521,0.364812087265261,0.495718387291535,0,0,0.0865478886078475,0,0,0,0,0,0,0.804639146420691,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0,0.054943952156948,0.034489466458534,0,0,0,0,0,0,0,0.0527554171614426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357086911466381,0.283448337556827,0.196699873644339,0.307735388878776,0.374778587894724,0.399810008829701,0.480735069848811,0.371245906776716,0.280187789078248,0.407098602473158,0,0,0.0684580848992459,0,0,0.073294297058821,0.0871588832444397,0,0.120876255993453,0,0,0.103334286379177,0.107523539997041,0.0763037466917402,0.109638387271474,0,0.0905291472420136,0.141706336142815,0.14986111676545,0.158843797677303,0.128033729919821,0.185379913858661,0.092873634605593,0.0589368614163519,0.0390607415003592,0.126604887871452,0.135404897539632,0.101427320830301,0.104353329269123,0,0.0924644954689594,0.112441925220423,0.0343006258190532,0.117229416500102,0,0.242897000144792,0.091291089277545,0.0845301845292944,0.0660632771564134,0.158719081855703,0
|coexpression_dpi_cluster_scores_median=0.0300484082731197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257502384358885,0.313441563167376,0.213207239280454,0,0,0,0,0,0,0,0,0.0549981337564001,0,0.745887610145509,0.506327139467406,0.0501827898833331,0,0,0.732766388647999,0.897358529433381,0.834868645659988,0.21995931373127,0.321774788881763,0.182104477852721,0.997117858826398,1.17808631342852,0.993978137410549,0.486061930039393,0.568795472202898,0.326007286088902,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.0396906956236485,0,0,0,0,0,0,0.0893284091371433,0,0.112901225419538,0.129358133846345,0.206537407802916,0.0901223798974778,0.06097065795378,0.131222718281153,0.0514097768499148,0,0,0,0,0,0,0,0.273774759912798,0.264295134298998,0,0,0,0,0.84457816239703,0.516866159673758,0.176848416016191,0.535742172250406,0.445605479897055,0.883617005742416,0.791811337922243,0,0,0,0.0829439327499637,0,0,0,0,0.055406237837571,0.0990682757404326,0.074598306112166,0.0999233952154288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54697173461699,0.116844694267823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787999917067211,0.805618936442092,0,0,0,0,0.0847275925579778,0,0,0,0,0.111348509539896,0,0.466560377831798,0,0,0,0,0,0.0263032485151392,0,0.0750375819757342,0,0.116420155980149,0,0.0665746561212115,0.1324189587654,0,0,0,0.809359939830739,0.0719044921483595,0.0999282245587464,0.15493316250826,0.275703118355611,0.233877840891521,0.364812087265261,0.495718387291535,0,0,0.0865478886078475,0,0,0,0,0,0,0.804639146420691,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0,0.054943952156948,0.034489466458534,0,0,0,0,0,0,0,0.0527554171614426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357086911466381,0.283448337556827,0.196699873644339,0.307735388878776,0.374778587894724,0.399810008829701,0.480735069848811,0.371245906776716,0.280187789078248,0.407098602473158,0,0,0.0684580848992459,0,0,0.073294297058821,0.0871588832444397,0,0.120876255993453,0,0,0.103334286379177,0.107523539997041,0.0763037466917402,0.109638387271474,0,0.0905291472420136,0.141706336142815,0.14986111676545,0.158843797677303,0.128033729919821,0.185379913858661,0.092873634605593,0.0589368614163519,0.0390607415003592,0.126604887871452,0.135404897539632,0.101427320830301,0.104353329269123,0,0.0924644954689594,0.112441925220423,0.0343006258190532,0.117229416500102,0,0.242897000144792,0.091291089277545,0.0845301845292944,0.0660632771564134,0.158719081855703,0
|gostat_on_MCL_coexpression=GO:0004621;glycosylphosphatidylinositol phospholipase D activity;0.0170656878321372;14756!GO:0006507;GPI anchor release;0.0170656878321372;14756!
|gostat_on_MCL_coexpression=GO:0004621;glycosylphosphatidylinositol phospholipase D activity;0.0170656878321372;14756!GO:0006507;GPI anchor release;0.0170656878321372;14756!
|ontology_enrichment_celltype=CL:0000117!1.58e-12!23;CL:0000337!1.58e-12!23;CL:0000540!4.07e-09!33;CL:0000047!4.07e-09!33;CL:0000031!4.07e-09!33;CL:0000404!4.07e-09!33
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.21e-31!54;UBERON:0001049!1.85e-29!52;UBERON:0005068!1.85e-29!52;UBERON:0006241!1.85e-29!52;UBERON:0007135!1.85e-29!52;UBERON:0001017!7.11e-29!73;UBERON:0001016!1.45e-27!75;UBERON:0002346!2.05e-27!64;UBERON:0003075!2.05e-27!64;UBERON:0007284!2.05e-27!64;UBERON:0000955!1.50e-24!47;UBERON:0006238!1.50e-24!47;UBERON:0002616!1.22e-23!46;UBERON:0010371!1.55e-23!73;UBERON:0004121!9.51e-23!95;UBERON:0000924!9.51e-23!95;UBERON:0006601!9.51e-23!95;UBERON:0003080!8.88e-22!40;UBERON:0010314!3.42e-21!92;UBERON:0002780!9.41e-21!39;UBERON:0001890!9.41e-21!39;UBERON:0006240!9.41e-21!39;UBERON:0003056!9.47e-21!49;UBERON:0002020!1.45e-17!34;UBERON:0003528!3.04e-13!29;UBERON:0002791!3.04e-13!29;UBERON:0001893!3.04e-13!29;UBERON:0002021!2.28e-09!10;UBERON:0000411!2.28e-09!10;UBERON:0001950!2.28e-09!10;UBERON:0001894!8.48e-09!10;UBERON:0006222!8.48e-09!10;UBERON:0002420!2.91e-08!8;UBERON:0007245!2.91e-08!8;UBERON:0010009!2.91e-08!8;UBERON:0010011!2.91e-08!8;UBERON:0000454!2.91e-08!8;UBERON:0003076!4.66e-08!12;UBERON:0003057!4.66e-08!12;UBERON:0002619!2.41e-07!17;UBERON:0000956!3.54e-07!21;UBERON:0001869!3.54e-07!21;UBERON:0000203!3.54e-07!21;UBERON:0002240!5.59e-07!6;UBERON:0005174!5.59e-07!6;UBERON:0001137!5.59e-07!6;UBERON:0000007!7.99e-07!8;UBERON:0003296!7.99e-07!8;UBERON:0010133!7.99e-07!8
}}
}}

Revision as of 20:53, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:101329495..101329506,+p7@Rnd2
Mm9::chr13:25034764..25034799,+p6@Gpld1
Mm9::chr17:25393219..25393238,-p1@Baiap3
Mm9::chr18:31476613..31476624,-p4@Rit2
Mm9::chr1:75274920..75275015,-p1@Resp18
Mm9::chr1:75275016..75275030,-p2@Resp18
Mm9::chr3:31106988..31106998,-p@chr3:31106988..31106998
-
Mm9::chrX:46838265..46838299,+p@chrX:46838265..46838299
+
Mm9::chrX:47141381..47141413,-p2@Igsf1
Mm9::chrX:7497036..7497046,+p2@Pcsk1n
Mm9::chrX:7499517..7499528,-p@chrX:7499517..7499528
-
Mm9::chrX:7500293..7500317,-p@chrX:7500293..7500317
-
Mm9::chrX:93908798..93908814,+p1@Gpr165


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004621glycosylphosphatidylinositol phospholipase D activity0.0170656878321372
GO:0006507GPI anchor release0.0170656878321372



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.58e-1223
neuroblast (sensu Vertebrata)1.58e-1223
neuron4.07e-0933
neuronal stem cell4.07e-0933
neuroblast4.07e-0933
electrically signaling cell4.07e-0933

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.21e-3154
neural tube1.85e-2952
neural rod1.85e-2952
future spinal cord1.85e-2952
neural keel1.85e-2952
central nervous system7.11e-2973
nervous system1.45e-2775
neurectoderm2.05e-2764
neural plate2.05e-2764
presumptive neural plate2.05e-2764
brain1.50e-2447
future brain1.50e-2447
regional part of brain1.22e-2346
ecto-epithelium1.55e-2373
ectoderm-derived structure9.51e-2395
ectoderm9.51e-2395
presumptive ectoderm9.51e-2395
anterior neural tube8.88e-2240
structure with developmental contribution from neural crest3.42e-2192
regional part of forebrain9.41e-2139
forebrain9.41e-2139
future forebrain9.41e-2139
pre-chordal neural plate9.47e-2149
gray matter1.45e-1734
brain grey matter3.04e-1329
regional part of telencephalon3.04e-1329
telencephalon3.04e-1329
occipital lobe2.28e-0910
visual cortex2.28e-0910
neocortex2.28e-0910
diencephalon8.48e-0910
future diencephalon8.48e-0910
basal ganglion2.91e-088
nuclear complex of neuraxis2.91e-088
aggregate regional part of brain2.91e-088
collection of basal ganglia2.91e-088
cerebral subcortex2.91e-088
posterior neural tube4.66e-0812
chordal neural plate4.66e-0812
regional part of cerebral cortex2.41e-0717
cerebral cortex3.54e-0721
cerebral hemisphere3.54e-0721
pallium3.54e-0721
spinal cord5.59e-076
dorsal region element5.59e-076
dorsum5.59e-076
pituitary gland7.99e-078
gland of diencephalon7.99e-078
neuroendocrine gland7.99e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}