FFCP PHASE1:Hg19::chr10:71561630..71561641,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|TSSclassifier=S | |||
|UniProt=G5E987,E7ES56,E7ES55,E7ES51,E7ES50,E7ES49,E7ES47,E9PEG9,E7ES46,Q5TAT6,B9EGD2,E7EWL8 | |UniProt=G5E987,E7ES56,E7ES55,E7ES51,E7ES50,E7ES49,E7ES47,E9PEG9,E7ES46,Q5TAT6,B9EGD2,E7EWL8 | ||
|association_with_transcript=-2bp_to_ENST00000356340,ENST00000398964,ENST00000398966,ENST00000398968,ENST00000398969,ENST00000398971,ENST00000398972,ENST00000398973,ENST00000398974,NM_001130103,NM_080798,NM_080800,NM_080801,NM_080802,NM_080805,uc001jpr.1,uc001jps.1,uc001jpt.1,uc001jpu.1,uc001jpv.1,uc001jpw.1,uc001jpx.1,uc001jpy.1,uc001jpz.1,uc001jqa.1,uc001jqb.1,uc001jqc.1,uc001jqd.1,uc001jqe.1,uc001jqf.1,uc001jqg.1,uc001jqh.1,uc001jqi.1,uc001jqj.1,uc001jql.2_5end | |association_with_transcript=-2bp_to_ENST00000356340,ENST00000398964,ENST00000398966,ENST00000398968,ENST00000398969,ENST00000398971,ENST00000398972,ENST00000398973,ENST00000398974,NM_001130103,NM_080798,NM_080800,NM_080801,NM_080802,NM_080805,uc001jpr.1,uc001jps.1,uc001jpt.1,uc001jpu.1,uc001jpv.1,uc001jpw.1,uc001jpx.1,uc001jpy.1,uc001jpz.1,uc001jqa.1,uc001jqb.1,uc001jqc.1,uc001jqd.1,uc001jqe.1,uc001jqf.1,uc001jqg.1,uc001jqh.1,uc001jqi.1,uc001jqj.1,uc001jql.2_5end | ||
Revision as of 01:58, 6 July 2013
| Short description: | p3@COL13A1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_COL13A1_5end |
| Coexpression cluster: | C3039_Pericytes_Smooth_alveolar_Fibroblast_fibrosarcoma_Lens_Meningeal |
| Association with transcript: | -2bp_to_ENST00000356340, ENST00000398964, ENST00000398966, ENST00000398968, ENST00000398969, ENST00000398971, ENST00000398972, ENST00000398973, ENST00000398974, NM_001130103, NM_080798, NM_080800, NM_080801, NM_080802, NM_080805, uc001jpr.1, uc001jps.1, uc001jpt.1, uc001jp |
| EntrezGene: | COL13A1 |
| HGNC: | 2190 |
| UniProt: | G5E987E7ES56E7ES55E7ES51E7ES50E7ES49E7ES47E9PEG9E7ES46Q5TAT6B9EGD2E7EWL8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mast cell | 1.51e-15 | 5 |
| basophil mast progenitor cell | 1.51e-15 | 5 |
| astrocyte of the cerebellum | 1.17e-09 | 3 |
| vascular associated smooth muscle cell | 7.47e-09 | 32 |
| endocrine cell | 1.90e-08 | 9 |
| endothelial cell of artery | 8.32e-08 | 9 |
| aortic endothelial cell | 1.03e-07 | 6 |
| central nervous system pericyte | 1.14e-07 | 2 |
| mesodermal cell | 1.51e-07 | 121 |
| fibroblast of choroid plexus | 1.60e-07 | 2 |
| aortic smooth muscle cell | 2.23e-07 | 10 |
| endothelial cell | 2.93e-07 | 36 |
| smooth muscle cell | 3.45e-07 | 43 |
| smooth muscle myoblast | 3.45e-07 | 43 |
| blood vessel endothelial cell | 5.39e-07 | 18 |
| embryonic blood vessel endothelial progenitor cell | 5.39e-07 | 18 |
| trabecular meshwork cell | 9.44e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
