FFCP PHASE1:Mm9::chr12:73509728..73509746,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=104001|HGNC=|MCL_coexpression_id=1|UniProt=Q4FJL2,Q8K0T0|association_with_transcript=179bp_to_NM_153457,uc007nvk.1_5end|description=CAGE_peak_4_at_Rtn1_5end|id=chr12:73509728..73509746,-|ontology_enrichment_celltype=CL:0000221!1.53e-15!44;CL:0000133!1.53e-15!44;CL:0002319!2.98e-15!43;CL:0000055!7.31e-13!50;CL:0000117!9.09e-13!23;CL:0000337!9.09e-13!23;CL:0000540!1.23e-12!33;CL:0000047!1.23e-12!33;CL:0000031!1.23e-12!33;CL:0000404!1.23e-12!33;CL:0000393!6.24e-11!39;CL:0000211!6.24e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,5.62e-17,44;CL:0000133,5.62e-17,44;CL:0000117,6.24e-17,23;CL:0000337,6.24e-17,23;CL:0002319,1.38e-16,43;CL:0000540,5.51e-14,33;CL:0000047,5.51e-14,33;CL:0000031,5.51e-14,33;CL:0000404,5.51e-14,33;CL:0000393,4.12e-13,39;CL:0000211,4.12e-13,39;CL:0002321,7.41e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.23e-33!73;UBERON:0005743!1.23e-33!73;UBERON:0000073!2.53e-33!75;UBERON:0001016!2.53e-33!75;UBERON:0004121!1.20e-31!102;UBERON:0000924!1.20e-31!102;UBERON:0006601!1.20e-31!102;UBERON:0002346!5.71e-30!71;UBERON:0003075!5.71e-30!71;UBERON:0007284!5.71e-30!71;UBERON:0000033!4.31e-27!63;UBERON:0001049!8.59e-27!52;UBERON:0005068!8.59e-27!52;UBERON:0006241!8.59e-27!52;UBERON:0007135!8.59e-27!52;UBERON:0000955!1.42e-25!50;UBERON:0006238!1.42e-25!50;UBERON:0002616!5.55e-25!49;UBERON:0003056!5.04e-22!49;UBERON:0002020!3.18e-20!34;UBERON:0003080!4.88e-20!40;UBERON:0002780!2.65e-19!39;UBERON:0001890!2.65e-19!39;UBERON:0006240!2.65e-19!39;UBERON:0002791!2.92e-17!29;UBERON:0003528!2.92e-17!29;UBERON:0001893!2.92e-17!29;UBERON:0007811!2.14e-13!86;UBERON:0000956!1.53e-12!21;UBERON:0001869!1.53e-12!21;UBERON:0000203!1.53e-12!21;UBERON:0002619!4.81e-11!17;UBERON:0000153!1.11e-10!94;UBERON:0000025!1.43e-09!114;UBERON:0004111!1.23e-08!122;UBERON:0002021!5.91e-08!10;UBERON:0000411!5.91e-08!10;UBERON:0001950!5.91e-08!10;UBERON:0003076!3.00e-07!12;UBERON:0003057!3.00e-07!12;UBERON:0000468!3.58e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-38,73;UBERON:0001016,4.78e-38,75;UBERON:0004121,4.96e-35,95;UBERON:0000924,4.96e-35,95;UBERON:0006601,4.96e-35,95;UBERON:0002346,2.00e-34,64;UBERON:0003075,2.00e-34,64;UBERON:0007284,2.00e-34,64;UBERON:0000073,2.04e-34,54;UBERON:0001049,1.60e-32,52;UBERON:0005068,1.60e-32,52;UBERON:0006241,1.60e-32,52;UBERON:0007135,1.60e-32,52;UBERON:0010371,1.23e-30,73;UBERON:0000955,4.37e-28,47;UBERON:0006238,4.37e-28,47;UBERON:0002616,2.64e-27,46;UBERON:0002020,3.53e-27,34;UBERON:0003056,4.15e-26,49;UBERON:0010314,1.42e-24,92;UBERON:0003080,2.45e-24,40;UBERON:0002780,2.36e-23,39;UBERON:0001890,2.36e-23,39;UBERON:0006240,2.36e-23,39;UBERON:0003528,4.20e-23,29;UBERON:0002791,4.20e-23,29;UBERON:0001893,4.20e-23,29;UBERON:0000956,1.28e-16,21;UBERON:0001869,1.28e-16,21;UBERON:0000203,1.28e-16,21;UBERON:0002619,1.44e-14,17;UBERON:0002021,2.47e-10,10;UBERON:0000411,2.47e-10,10;UBERON:0001950,2.47e-10,10;UBERON:0003076,1.98e-08,12;UBERON:0003057,1.98e-08,12;UBERON:0000025,4.69e-08,114;UBERON:0002420,1.34e-07,8;UBERON:0007245,1.34e-07,8;UBERON:0010009,1.34e-07,8;UBERON:0010011,1.34e-07,8;UBERON:0000454,1.34e-07,8;UBERON:0004111,2.47e-07,122|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0.137114433605739,0,4.67738095830884,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.92445281484804,5.27246838562732,4.27745777963423,1.25987779462826,4.31257693094915,0,0,0,1.54355661621568,2.29226751951005,2.06268836910977,11.5320382689971,13.7537654610729,6.97214543856797,1.0165335962074,0,0,0,0,5.69240209984969,8.4528027170742,1.76272340924412,2.56511282830212,2.10324961351382,13.139945282575,12.589506834242,3.1847607795888,3.06705507258356,3.67687514644008,13.2139057199266,15.5778552463929,18.4327839907492,12.3973110466382,12.9912453915422,7.29278718779464,15.0758819460746,12.9435400307286,17.1134037510027,15.3206864446307,13.5253096759148,10.6247684120421,0.227178579999552,1.20914496170857,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,1.97180787687353,0,0,0,0,0,0,0.68510327831436,0.517875767294343,0.890652834388949,1.04091196059682,1.21786191324856,1.15307748628029,1.20578112442098,0.823120949949934,0.502666365318702,0,0.433798070759735,0,0,0,0,0,14.0534782565543,12.7762491156208,0,0,0,0,23.2175491077475,32.0250421973039,12.4397808591736,26.7689453096106,20.4572365864264,14.5451631191692,19.4689515681309,0.203678727700633,0,0.252722758433675,2.10441855886474,0.130120442962704,0.919608417733892,1.80062129805349,1.65775299619287,2.58538696775046,2.562274405697,4.12287588062807,7.76110112217047,0.215567992932842,0,0.351902248327898,0,0,0,0,0.398068533636986,0,0,0,0,0.234526059981096,0.180062061461015,0.710234206755631,0,0,0.232533944750408,0.268273401399619,0.817357396570186,0.329119699826961,0.164167464079095,0.243206428637567,0.438599962275997,0.219550115291051,0,26.2862435705159,8.33527360272204,0,0,0.213288250535234,0.464473343720877,0.515469845288373,0.201683524623343,0.22237804384487,0.190225626112559,0,0.329397909448022,0.754005626400808,0,0.58489226135736,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0.295220295959204,0.156998727841375,0.123397163921801,0,0,0,0,0.608580364165509,0,0.25462585178142,0.287696137450811,0,0,0,0.372140947668503,0,0.252578877947112,0,0.482443521363367,0.739012760666419,0.757965647081939,1.14075483509418,0.339490171550376,0.469380496577004,0.670025029767263,0.476087281772027,0.390267295715598,0.945810864637146,0.8858587585951,1.75400245523236,0.491589944147214,0.345369963731791,0.578596234326046,0,0,1.47529281905711,0.551873492609465,15.2523060488402,10.7834751664827,0,0.252470927204373,1.26203287766503,0.780877488593277,2.36965737506079,0.238968797952552,0.445597348164788,0.566153061577665,0.404810701674894,1.75353514746787,2.37172666767914,12.2102100240287,1.56134093729095,0.178065603667255,0.651547837414304,1.64970122972535,1.32745138339963,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0.516856586336442,0,0,0.632073515871632,0,1.03135543248187,5.44703369206061,0.540183282093931,0.646793418913773,1.07168517515796,0.886701168211368,1.24858172321449,1.97458824722545,2.74018454203139,0.704015124191131,2.1183207086382,0,0.32977250588296,0,0,0,0,0.291480836629851,15.9465759729038,0.170870880797853,0,0.185194527369712,0,0.546776910884101,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,0.627264888043406,0.655087691238533,0.404593039154462,0.578574190077352,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.168956125490778,0.234714477291508,0.13020438484395,0,0.724752362478018,0.576060012515731,0,0.810900861160657,0.308132871494482,0,0.179026695667481,0.198681354781265,0.360586348559907,0.295379054349154,0.100966449948148,0,0.100826185136841,0,0,0,0.680191150845634,0.665957860122194,0.717710852875806,0.167884616364078,0.386379188064381,0.563047426353546,0.183151624267265,0,0,15.2482997506608,15.1907328047368,18.9055519435001,16.497905504994,13.0165678756422,26.4387864086395,17.550585006027,20.2644541450899,23.5634052671786,26.9235362110946,0.207574695168353,0.798049746802062,1.19513524027894,1.45864030240976,2.72497111416377,2.38996560985018,2.22246727801615,2.06035057238894,2.24643446714271,0.505394423527595,1.77435509923168,2.07488975524684,1.77918864192777,1.98477972455095,2.23998328926892,1.42888107384922,2.0859178670074,1.35036454324594,0.824171801606613,1.76638704161277,3.42869252385415,1.4198064492747,2.38436189947321,2.32554266611726,1.50575008664529,1.86152137361688,1.09756783723664,1.57841826862706,1.22223702461276,1.12228454331548,0.949080144993393,1.0835493061312,2.04615521584845,2.47898945897546,1.92906610981141,6.74488560432454,2.10538447600868,1.71896843238639,1.53030665655075,1.32354851471709,0.927471342481686|short_description=p4@Rtn1}} | ||
|EntrezGene=104001 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q4FJL2,Q8K0T0 | |||
|association_with_transcript=179bp_to_NM_153457,uc007nvk.1_5end | |||
|description=CAGE_peak_4_at_Rtn1_5end | |||
|id=chr12:73509728..73509746,- | |||
|ontology_enrichment_celltype=CL:0000221!1.53e-15!44;CL:0000133!1.53e-15!44;CL:0002319!2.98e-15!43;CL:0000055!7.31e-13!50;CL:0000117!9.09e-13!23;CL:0000337!9.09e-13!23;CL:0000540!1.23e-12!33;CL:0000047!1.23e-12!33;CL:0000031!1.23e-12!33;CL:0000404!1.23e-12!33;CL:0000393!6.24e-11!39;CL:0000211!6.24e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.62e-17,44;CL:0000133,5.62e-17,44;CL:0000117,6.24e-17,23;CL:0000337,6.24e-17,23;CL:0002319,1.38e-16,43;CL:0000540,5.51e-14,33;CL:0000047,5.51e-14,33;CL:0000031,5.51e-14,33;CL:0000404,5.51e-14,33;CL:0000393,4.12e-13,39;CL:0000211,4.12e-13,39;CL:0002321,7.41e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.23e-33!73;UBERON:0005743!1.23e-33!73;UBERON:0000073!2.53e-33!75;UBERON:0001016!2.53e-33!75;UBERON:0004121!1.20e-31!102;UBERON:0000924!1.20e-31!102;UBERON:0006601!1.20e-31!102;UBERON:0002346!5.71e-30!71;UBERON:0003075!5.71e-30!71;UBERON:0007284!5.71e-30!71;UBERON:0000033!4.31e-27!63;UBERON:0001049!8.59e-27!52;UBERON:0005068!8.59e-27!52;UBERON:0006241!8.59e-27!52;UBERON:0007135!8.59e-27!52;UBERON:0000955!1.42e-25!50;UBERON:0006238!1.42e-25!50;UBERON:0002616!5.55e-25!49;UBERON:0003056!5.04e-22!49;UBERON:0002020!3.18e-20!34;UBERON:0003080!4.88e-20!40;UBERON:0002780!2.65e-19!39;UBERON:0001890!2.65e-19!39;UBERON:0006240!2.65e-19!39;UBERON:0002791!2.92e-17!29;UBERON:0003528!2.92e-17!29;UBERON:0001893!2.92e-17!29;UBERON:0007811!2.14e-13!86;UBERON:0000956!1.53e-12!21;UBERON:0001869!1.53e-12!21;UBERON:0000203!1.53e-12!21;UBERON:0002619!4.81e-11!17;UBERON:0000153!1.11e-10!94;UBERON:0000025!1.43e-09!114;UBERON:0004111!1.23e-08!122;UBERON:0002021!5.91e-08!10;UBERON:0000411!5.91e-08!10;UBERON:0001950!5.91e-08!10;UBERON:0003076!3.00e-07!12;UBERON:0003057!3.00e-07!12;UBERON:0000468!3.58e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-38,73;UBERON:0001016,4.78e-38,75;UBERON:0004121,4.96e-35,95;UBERON:0000924,4.96e-35,95;UBERON:0006601,4.96e-35,95;UBERON:0002346,2.00e-34,64;UBERON:0003075,2.00e-34,64;UBERON:0007284,2.00e-34,64;UBERON:0000073,2.04e-34,54;UBERON:0001049,1.60e-32,52;UBERON:0005068,1.60e-32,52;UBERON:0006241,1.60e-32,52;UBERON:0007135,1.60e-32,52;UBERON:0010371,1.23e-30,73;UBERON:0000955,4.37e-28,47;UBERON:0006238,4.37e-28,47;UBERON:0002616,2.64e-27,46;UBERON:0002020,3.53e-27,34;UBERON:0003056,4.15e-26,49;UBERON:0010314,1.42e-24,92;UBERON:0003080,2.45e-24,40;UBERON:0002780,2.36e-23,39;UBERON:0001890,2.36e-23,39;UBERON:0006240,2.36e-23,39;UBERON:0003528,4.20e-23,29;UBERON:0002791,4.20e-23,29;UBERON:0001893,4.20e-23,29;UBERON:0000956,1.28e-16,21;UBERON:0001869,1.28e-16,21;UBERON:0000203,1.28e-16,21;UBERON:0002619,1.44e-14,17;UBERON:0002021,2.47e-10,10;UBERON:0000411,2.47e-10,10;UBERON:0001950,2.47e-10,10;UBERON:0003076,1.98e-08,12;UBERON:0003057,1.98e-08,12;UBERON:0000025,4.69e-08,114;UBERON:0002420,1.34e-07,8;UBERON:0007245,1.34e-07,8;UBERON:0010009,1.34e-07,8;UBERON:0010011,1.34e-07,8;UBERON:0000454,1.34e-07,8;UBERON:0004111,2.47e-07,122 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0.137114433605739,0,4.67738095830884,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.92445281484804,5.27246838562732,4.27745777963423,1.25987779462826,4.31257693094915,0,0,0,1.54355661621568,2.29226751951005,2.06268836910977,11.5320382689971,13.7537654610729,6.97214543856797,1.0165335962074,0,0,0,0,5.69240209984969,8.4528027170742,1.76272340924412,2.56511282830212,2.10324961351382,13.139945282575,12.589506834242,3.1847607795888,3.06705507258356,3.67687514644008,13.2139057199266,15.5778552463929,18.4327839907492,12.3973110466382,12.9912453915422,7.29278718779464,15.0758819460746,12.9435400307286,17.1134037510027,15.3206864446307,13.5253096759148,10.6247684120421,0.227178579999552,1.20914496170857,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,1.97180787687353,0,0,0,0,0,0,0.68510327831436,0.517875767294343,0.890652834388949,1.04091196059682,1.21786191324856,1.15307748628029,1.20578112442098,0.823120949949934,0.502666365318702,0,0.433798070759735,0,0,0,0,0,14.0534782565543,12.7762491156208,0,0,0,0,23.2175491077475,32.0250421973039,12.4397808591736,26.7689453096106,20.4572365864264,14.5451631191692,19.4689515681309,0.203678727700633,0,0.252722758433675,2.10441855886474,0.130120442962704,0.919608417733892,1.80062129805349,1.65775299619287,2.58538696775046,2.562274405697,4.12287588062807,7.76110112217047,0.215567992932842,0,0.351902248327898,0,0,0,0,0.398068533636986,0,0,0,0,0.234526059981096,0.180062061461015,0.710234206755631,0,0,0.232533944750408,0.268273401399619,0.817357396570186,0.329119699826961,0.164167464079095,0.243206428637567,0.438599962275997,0.219550115291051,0,26.2862435705159,8.33527360272204,0,0,0.213288250535234,0.464473343720877,0.515469845288373,0.201683524623343,0.22237804384487,0.190225626112559,0,0.329397909448022,0.754005626400808,0,0.58489226135736,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0.295220295959204,0.156998727841375,0.123397163921801,0,0,0,0,0.608580364165509,0,0.25462585178142,0.287696137450811,0,0,0,0.372140947668503,0,0.252578877947112,0,0.482443521363367,0.739012760666419,0.757965647081939,1.14075483509418,0.339490171550376,0.469380496577004,0.670025029767263,0.476087281772027,0.390267295715598,0.945810864637146,0.8858587585951,1.75400245523236,0.491589944147214,0.345369963731791,0.578596234326046,0,0,1.47529281905711,0.551873492609465,15.2523060488402,10.7834751664827,0,0.252470927204373,1.26203287766503,0.780877488593277,2.36965737506079,0.238968797952552,0.445597348164788,0.566153061577665,0.404810701674894,1.75353514746787,2.37172666767914,12.2102100240287,1.56134093729095,0.178065603667255,0.651547837414304,1.64970122972535,1.32745138339963,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0.516856586336442,0,0,0.632073515871632,0,1.03135543248187,5.44703369206061,0.540183282093931,0.646793418913773,1.07168517515796,0.886701168211368,1.24858172321449,1.97458824722545,2.74018454203139,0.704015124191131,2.1183207086382,0,0.32977250588296,0,0,0,0,0.291480836629851,15.9465759729038,0.170870880797853,0,0.185194527369712,0,0.546776910884101,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,0.627264888043406,0.655087691238533,0.404593039154462,0.578574190077352,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.168956125490778,0.234714477291508,0.13020438484395,0,0.724752362478018,0.576060012515731,0,0.810900861160657,0.308132871494482,0,0.179026695667481,0.198681354781265,0.360586348559907,0.295379054349154,0.100966449948148,0,0.100826185136841,0,0,0,0.680191150845634,0.665957860122194,0.717710852875806,0.167884616364078,0.386379188064381,0.563047426353546,0.183151624267265,0,0,15.2482997506608,15.1907328047368,18.9055519435001,16.497905504994,13.0165678756422,26.4387864086395,17.550585006027,20.2644541450899,23.5634052671786,26.9235362110946,0.207574695168353,0.798049746802062,1.19513524027894,1.45864030240976,2.72497111416377,2.38996560985018,2.22246727801615,2.06035057238894,2.24643446714271,0.505394423527595,1.77435509923168,2.07488975524684,1.77918864192777,1.98477972455095,2.23998328926892,1.42888107384922,2.0859178670074,1.35036454324594,0.824171801606613,1.76638704161277,3.42869252385415,1.4198064492747,2.38436189947321,2.32554266611726,1.50575008664529,1.86152137361688,1.09756783723664,1.57841826862706,1.22223702461276,1.12228454331548,0.949080144993393,1.0835493061312,2.04615521584845,2.47898945897546,1.92906610981141,6.74488560432454,2.10538447600868,1.71896843238639,1.53030665655075,1.32354851471709,0.927471342481686 | |||
|short_description=p4@Rtn1 | |||
}} |
Revision as of 23:08, 12 September 2013
Short description: | p4@Rtn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rtn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 179bp_to_NM_153457, uc007nvk.1_5end |
EntrezGene: | Rtn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.62e-17 | 44 |
neurectodermal cell | 5.62e-17 | 44 |
CNS neuron (sensu Vertebrata) | 6.24e-17 | 23 |
neuroblast (sensu Vertebrata) | 6.24e-17 | 23 |
neural cell | 1.38e-16 | 43 |
neuron | 5.51e-14 | 33 |
neuronal stem cell | 5.51e-14 | 33 |
neuroblast | 5.51e-14 | 33 |
electrically signaling cell | 5.51e-14 | 33 |
electrically responsive cell | 4.12e-13 | 39 |
electrically active cell | 4.12e-13 | 39 |
embryonic cell | 7.41e-08 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.