FFCP PHASE1:Mm9::chr3:89049874..89049900,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=66059|HGNC=|MCL_coexpression_id=22|UniProt=Q5RL79|association_with_transcript=0bp_to_ENSMUST00000040888,ENSMUST00000126691_5end|description=CAGE_peak_4_at_Krtcap2_5end|id=chr3:89049874..89049900,+|ontology_enrichment_celltype=CL:0000117!2.00e-17!23;CL:0000337!2.00e-17!23;CL:0000540!5.97e-15!33;CL:0000047!5.97e-15!33;CL:0000031!5.97e-15!33;CL:0000404!5.97e-15!33;CL:0000221!1.87e-13!44;CL:0000133!1.87e-13!44;CL:0002319!5.73e-13!43;CL:0000393!1.62e-12!39;CL:0000211!1.62e-12!39;CL:0000055!8.83e-11!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.23e-40,23;CL:0000337,4.23e-40,23;CL:0000540,6.31e-27,33;CL:0000047,6.31e-27,33;CL:0000031,6.31e-27,33;CL:0000404,6.31e-27,33;CL:0000393,2.93e-22,39;CL:0000211,2.93e-22,39;CL:0002319,7.17e-20,43;CL:0000221,2.43e-19,44;CL:0000133,2.43e-19,44;CL:0000120,1.24e-11,3;CL:0002613,1.34e-11,3;CL:0002612,4.36e-11,3;CL:0002321,7.01e-11,70;CL:0002609,2.98e-09,6;CL:0002611,1.34e-07,2;CL:0000723,1.40e-07,91;CL:0000048,1.40e-07,91;CL:0000034,6.68e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.04e-20!34;UBERON:0000073!1.10e-20!75;UBERON:0001016!1.10e-20!75;UBERON:0001017!6.09e-20!73;UBERON:0005743!6.09e-20!73;UBERON:0001049!1.24e-16!52;UBERON:0005068!1.24e-16!52;UBERON:0006241!1.24e-16!52;UBERON:0007135!1.24e-16!52;UBERON:0002791!2.22e-16!29;UBERON:0003528!2.22e-16!29;UBERON:0001893!2.22e-16!29;UBERON:0004121!3.82e-16!102;UBERON:0000924!3.82e-16!102;UBERON:0006601!3.82e-16!102;UBERON:0002346!2.51e-15!71;UBERON:0003075!2.51e-15!71;UBERON:0007284!2.51e-15!71;UBERON:0000955!3.77e-15!50;UBERON:0006238!3.77e-15!50;UBERON:0003080!9.70e-15!40;UBERON:0002616!1.53e-14!49;UBERON:0002780!3.20e-14!39;UBERON:0001890!3.20e-14!39;UBERON:0006240!3.20e-14!39;UBERON:0003056!7.35e-14!49;UBERON:0000033!1.43e-13!63;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0002619!2.71e-09!17;UBERON:0002420!3.16e-07!8;UBERON:0007245!3.16e-07!8;UBERON:0010009!3.16e-07!8;UBERON:0010011!3.16e-07!8;UBERON:0000454!3.16e-07!8;UBERON:0007811!3.81e-07!86;UBERON:0002021!6.55e-07!10;UBERON:0000411!6.55e-07!10;UBERON:0001950!6.55e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.08e-36,34;UBERON:0000073,1.52e-23,54;UBERON:0003528,3.47e-23,29;UBERON:0002791,3.47e-23,29;UBERON:0001893,3.47e-23,29;UBERON:0001017,1.18e-22,73;UBERON:0001049,3.20e-22,52;UBERON:0005068,3.20e-22,52;UBERON:0006241,3.20e-22,52;UBERON:0007135,3.20e-22,52;UBERON:0001016,6.16e-22,75;UBERON:0002346,2.53e-17,64;UBERON:0003075,2.53e-17,64;UBERON:0007284,2.53e-17,64;UBERON:0001948,4.81e-17,5;UBERON:0002315,4.81e-17,5;UBERON:0002780,1.77e-16,39;UBERON:0001890,1.77e-16,39;UBERON:0006240,1.77e-16,39;UBERON:0004121,2.13e-16,95;UBERON:0000924,2.13e-16,95;UBERON:0006601,2.13e-16,95;UBERON:0003080,5.44e-16,40;UBERON:0010371,1.05e-14,73;UBERON:0002240,3.63e-14,6;UBERON:0005174,3.63e-14,6;UBERON:0001137,3.63e-14,6;UBERON:0000956,6.56e-14,21;UBERON:0001869,6.56e-14,21;UBERON:0000203,6.56e-14,21;UBERON:0002616,1.62e-13,46;UBERON:0000955,3.64e-13,47;UBERON:0006238,3.64e-13,47;UBERON:0003056,1.66e-12,49;UBERON:0000369,5.36e-12,5;UBERON:0002435,5.36e-12,5;UBERON:0000204,5.36e-12,5;UBERON:0010082,5.36e-12,5;UBERON:0002619,2.90e-11,17;UBERON:0002257,4.36e-11,3;UBERON:0002420,6.27e-11,8;UBERON:0007245,6.27e-11,8;UBERON:0010009,6.27e-11,8;UBERON:0010011,6.27e-11,8;UBERON:0000454,6.27e-11,8;UBERON:0010314,7.49e-11,92;UBERON:0000025,5.41e-08,114;UBERON:0002021,7.29e-08,10;UBERON:0000411,7.29e-08,10;UBERON:0001950,7.29e-08,10;UBERON:0002256,1.34e-07,2;UBERON:0004111,3.29e-07,122;UBERON:0003076,6.05e-07,12;UBERON:0003057,6.05e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0.137114433605739,0,0,0.297872853602656,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,2.83243045203437,2.64495489636016,6.33831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0,0.829516898467821,1.21505344498522,1.89292465216244,1.71390590642282,1.98781686856452,2.9397791811589,2.1086003624012,0,1.10115880999389,0.766124028511126,0.614426133024974,2.90149833006426,4.02545631850602,2.6045668527838,0.279182999001381,1.12552522006336,0.45839474333043,2.35702868378934,2.56269025438385,2.42319279572891,0.227178579999552,0.302286240427142,0,0,0,0.539703191637817,0,0,0.280888840263504,0,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.452167921657868,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0.915001205637253,3.14135880282161,0,0.511430914660661,0.41557608911912,0.162241263067758,0.101839363850316,0,0.252722758433675,0,0,0.229902104433473,0,0.452114453507145,0.0680364991513279,0.2562274405697,0.374806898238915,0,0,0,0,0.219195732427575,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0.630869845692382,1.54356918568927,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.172684981865896,0,0,0,0,0,0.160550589987792,0.234423373184406,0.327869890753351,0,0.315508219416257,0,0.646270193198397,0,0,0.283076530788832,0,0.584511715822624,0.395287777946524,0.642642632843614,0,0.35613120733451,0,0,0,0.242780636154981,0,0,0.295301892880773,0.307435147943927,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0,0,0,0,0.329098041204242,0,0,1.0591603543191,0,0,0,0.0603129249281559,0,0,0,0.18542530201051,0.170870880797853,0,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0,0,0.324016022465404,0,0,0.134864346384821,0,0,0,0,0,0,0,0.388902376688095,0.645799117388655,0,0,0.39061315453185,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0.100826185136841,0,0,0,0,0,0,0,0,0.187682475451182,0,0.214368379079066,0,1.12950368523413,1.84130094602871,0,1.71853182343688,0.685082519770642,1.5107877947794,0.675022500231806,0.900642406448441,0.906284817968409,1.55328093525546,0,0,0.170733605754134,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.618105171716683,0.320919209591815,0,0.50695859978048,0,0.0936415074698824,0.512201219238954,0.229741875822453,0,0.463537303779422,0.192909220463705,0.412085900803307,0.588795680537589,0,0,0.715308569841963,0,0.564656282491984,0.423073039458382,0.182927972872773,0.263069711437843,0,1.12228454331548,0.593175090620871,0.29551344712669,1.63692417267876,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.214871054048298,0,0,0|short_description=p4@Krtcap2}} | ||
|EntrezGene=66059 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q5RL79 | |||
|association_with_transcript=0bp_to_ENSMUST00000040888,ENSMUST00000126691_5end | |||
|description=CAGE_peak_4_at_Krtcap2_5end | |||
|id=chr3:89049874..89049900,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.00e-17!23;CL:0000337!2.00e-17!23;CL:0000540!5.97e-15!33;CL:0000047!5.97e-15!33;CL:0000031!5.97e-15!33;CL:0000404!5.97e-15!33;CL:0000221!1.87e-13!44;CL:0000133!1.87e-13!44;CL:0002319!5.73e-13!43;CL:0000393!1.62e-12!39;CL:0000211!1.62e-12!39;CL:0000055!8.83e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.23e-40,23;CL:0000337,4.23e-40,23;CL:0000540,6.31e-27,33;CL:0000047,6.31e-27,33;CL:0000031,6.31e-27,33;CL:0000404,6.31e-27,33;CL:0000393,2.93e-22,39;CL:0000211,2.93e-22,39;CL:0002319,7.17e-20,43;CL:0000221,2.43e-19,44;CL:0000133,2.43e-19,44;CL:0000120,1.24e-11,3;CL:0002613,1.34e-11,3;CL:0002612,4.36e-11,3;CL:0002321,7.01e-11,70;CL:0002609,2.98e-09,6;CL:0002611,1.34e-07,2;CL:0000723,1.40e-07,91;CL:0000048,1.40e-07,91;CL:0000034,6.68e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.04e-20!34;UBERON:0000073!1.10e-20!75;UBERON:0001016!1.10e-20!75;UBERON:0001017!6.09e-20!73;UBERON:0005743!6.09e-20!73;UBERON:0001049!1.24e-16!52;UBERON:0005068!1.24e-16!52;UBERON:0006241!1.24e-16!52;UBERON:0007135!1.24e-16!52;UBERON:0002791!2.22e-16!29;UBERON:0003528!2.22e-16!29;UBERON:0001893!2.22e-16!29;UBERON:0004121!3.82e-16!102;UBERON:0000924!3.82e-16!102;UBERON:0006601!3.82e-16!102;UBERON:0002346!2.51e-15!71;UBERON:0003075!2.51e-15!71;UBERON:0007284!2.51e-15!71;UBERON:0000955!3.77e-15!50;UBERON:0006238!3.77e-15!50;UBERON:0003080!9.70e-15!40;UBERON:0002616!1.53e-14!49;UBERON:0002780!3.20e-14!39;UBERON:0001890!3.20e-14!39;UBERON:0006240!3.20e-14!39;UBERON:0003056!7.35e-14!49;UBERON:0000033!1.43e-13!63;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0002619!2.71e-09!17;UBERON:0002420!3.16e-07!8;UBERON:0007245!3.16e-07!8;UBERON:0010009!3.16e-07!8;UBERON:0010011!3.16e-07!8;UBERON:0000454!3.16e-07!8;UBERON:0007811!3.81e-07!86;UBERON:0002021!6.55e-07!10;UBERON:0000411!6.55e-07!10;UBERON:0001950!6.55e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.08e-36,34;UBERON:0000073,1.52e-23,54;UBERON:0003528,3.47e-23,29;UBERON:0002791,3.47e-23,29;UBERON:0001893,3.47e-23,29;UBERON:0001017,1.18e-22,73;UBERON:0001049,3.20e-22,52;UBERON:0005068,3.20e-22,52;UBERON:0006241,3.20e-22,52;UBERON:0007135,3.20e-22,52;UBERON:0001016,6.16e-22,75;UBERON:0002346,2.53e-17,64;UBERON:0003075,2.53e-17,64;UBERON:0007284,2.53e-17,64;UBERON:0001948,4.81e-17,5;UBERON:0002315,4.81e-17,5;UBERON:0002780,1.77e-16,39;UBERON:0001890,1.77e-16,39;UBERON:0006240,1.77e-16,39;UBERON:0004121,2.13e-16,95;UBERON:0000924,2.13e-16,95;UBERON:0006601,2.13e-16,95;UBERON:0003080,5.44e-16,40;UBERON:0010371,1.05e-14,73;UBERON:0002240,3.63e-14,6;UBERON:0005174,3.63e-14,6;UBERON:0001137,3.63e-14,6;UBERON:0000956,6.56e-14,21;UBERON:0001869,6.56e-14,21;UBERON:0000203,6.56e-14,21;UBERON:0002616,1.62e-13,46;UBERON:0000955,3.64e-13,47;UBERON:0006238,3.64e-13,47;UBERON:0003056,1.66e-12,49;UBERON:0000369,5.36e-12,5;UBERON:0002435,5.36e-12,5;UBERON:0000204,5.36e-12,5;UBERON:0010082,5.36e-12,5;UBERON:0002619,2.90e-11,17;UBERON:0002257,4.36e-11,3;UBERON:0002420,6.27e-11,8;UBERON:0007245,6.27e-11,8;UBERON:0010009,6.27e-11,8;UBERON:0010011,6.27e-11,8;UBERON:0000454,6.27e-11,8;UBERON:0010314,7.49e-11,92;UBERON:0000025,5.41e-08,114;UBERON:0002021,7.29e-08,10;UBERON:0000411,7.29e-08,10;UBERON:0001950,7.29e-08,10;UBERON:0002256,1.34e-07,2;UBERON:0004111,3.29e-07,122;UBERON:0003076,6.05e-07,12;UBERON:0003057,6.05e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0.137114433605739,0,0,0.297872853602656,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,2.83243045203437,2.64495489636016,6.33831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0,0.829516898467821,1.21505344498522,1.89292465216244,1.71390590642282,1.98781686856452,2.9397791811589,2.1086003624012,0,1.10115880999389,0.766124028511126,0.614426133024974,2.90149833006426,4.02545631850602,2.6045668527838,0.279182999001381,1.12552522006336,0.45839474333043,2.35702868378934,2.56269025438385,2.42319279572891,0.227178579999552,0.302286240427142,0,0,0,0.539703191637817,0,0,0.280888840263504,0,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.452167921657868,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0.915001205637253,3.14135880282161,0,0.511430914660661,0.41557608911912,0.162241263067758,0.101839363850316,0,0.252722758433675,0,0,0.229902104433473,0,0.452114453507145,0.0680364991513279,0.2562274405697,0.374806898238915,0,0,0,0,0.219195732427575,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0.630869845692382,1.54356918568927,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0.172684981865896,0,0,0,0,0,0.160550589987792,0.234423373184406,0.327869890753351,0,0.315508219416257,0,0.646270193198397,0,0,0.283076530788832,0,0.584511715822624,0.395287777946524,0.642642632843614,0,0.35613120733451,0,0,0,0.242780636154981,0,0,0.295301892880773,0.307435147943927,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0,0,0,0,0.329098041204242,0,0,1.0591603543191,0,0,0,0.0603129249281559,0,0,0,0.18542530201051,0.170870880797853,0,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0,0,0.324016022465404,0,0,0.134864346384821,0,0,0,0,0,0,0,0.388902376688095,0.645799117388655,0,0,0.39061315453185,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0.100826185136841,0,0,0,0,0,0,0,0,0.187682475451182,0,0.214368379079066,0,1.12950368523413,1.84130094602871,0,1.71853182343688,0.685082519770642,1.5107877947794,0.675022500231806,0.900642406448441,0.906284817968409,1.55328093525546,0,0,0.170733605754134,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.618105171716683,0.320919209591815,0,0.50695859978048,0,0.0936415074698824,0.512201219238954,0.229741875822453,0,0.463537303779422,0.192909220463705,0.412085900803307,0.588795680537589,0,0,0.715308569841963,0,0.564656282491984,0.423073039458382,0.182927972872773,0.263069711437843,0,1.12228454331548,0.593175090620871,0.29551344712669,1.63692417267876,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.214871054048298,0,0,0 | |||
|short_description=p4@Krtcap2 | |||
}} |
Revision as of 02:50, 14 September 2013
Short description: | p4@Krtcap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Krtcap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000040888, ENSMUST00000126691_5end |
EntrezGene: | Krtcap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.23e-40 | 23 |
neuroblast (sensu Vertebrata) | 4.23e-40 | 23 |
neuron | 6.31e-27 | 33 |
neuronal stem cell | 6.31e-27 | 33 |
neuroblast | 6.31e-27 | 33 |
electrically signaling cell | 6.31e-27 | 33 |
electrically responsive cell | 2.93e-22 | 39 |
electrically active cell | 2.93e-22 | 39 |
neural cell | 7.17e-20 | 43 |
ectodermal cell | 2.43e-19 | 44 |
neurectodermal cell | 2.43e-19 | 44 |
granule cell | 1.24e-11 | 3 |
striatum neuron | 1.34e-11 | 3 |
neuron of the ventral spinal cord | 4.36e-11 | 3 |
embryonic cell | 7.01e-11 | 70 |
neuron of cerebral cortex | 2.98e-09 | 6 |
neuron of the dorsal spinal cord | 1.34e-07 | 2 |
somatic stem cell | 1.40e-07 | 91 |
multi fate stem cell | 1.40e-07 | 91 |
stem cell | 6.68e-07 | 97 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.