FFCP PHASE1:Mm9::chr4:57447229..57447240,+: Difference between revisions
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{{FFCP|EntrezGene=242481|HGNC=|MCL_coexpression_id=1|UniProt=Q3UZT2|association_with_transcript=-106bp_to_ENSMUST00000030049,uc008syf.1_5end|description=CAGE_peak_9_at_Palm2_5end|id=chr4:57447229..57447240,+|ontology_enrichment_celltype=CL:0000117!2.05e-14!23;CL:0000337!2.05e-14!23;CL:0000540!1.33e-12!33;CL:0000047!1.33e-12!33;CL:0000031!1.33e-12!33;CL:0000404!1.33e-12!33;CL:0000393!1.56e-09!39;CL:0000211!1.56e-09!39;CL:0000221!3.87e-09!44;CL:0000133!3.87e-09!44;CL:0002319!9.66e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.56e-12,23;CL:0000337,3.56e-12,23;CL:0002610,2.23e-09,3;CL:0002612,1.42e-08,3;CL:0002614,3.08e-08,3;CL:0000540,7.97e-08,33;CL:0000047,7.97e-08,33;CL:0000031,7.97e-08,33;CL:0000404,7.97e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.71e-28!73;UBERON:0005743!1.71e-28!73;UBERON:0000073!2.85e-27!75;UBERON:0001016!2.85e-27!75;UBERON:0001049!1.20e-25!52;UBERON:0005068!1.20e-25!52;UBERON:0006241!1.20e-25!52;UBERON:0007135!1.20e-25!52;UBERON:0002020!2.92e-24!34;UBERON:0000033!3.47e-24!63;UBERON:0000955!5.01e-24!50;UBERON:0006238!5.01e-24!50;UBERON:0002616!6.79e-23!49;UBERON:0004121!8.43e-21!102;UBERON:0000924!8.43e-21!102;UBERON:0006601!8.43e-21!102;UBERON:0002346!5.06e-20!71;UBERON:0003075!5.06e-20!71;UBERON:0007284!5.06e-20!71;UBERON:0003056!2.16e-19!49;UBERON:0003080!2.26e-19!40;UBERON:0002791!5.54e-19!29;UBERON:0003528!5.54e-19!29;UBERON:0001893!5.54e-19!29;UBERON:0002780!1.94e-18!39;UBERON:0001890!1.94e-18!39;UBERON:0006240!1.94e-18!39;UBERON:0007811!7.77e-14!86;UBERON:0000956!2.90e-13!21;UBERON:0001869!2.90e-13!21;UBERON:0000203!2.90e-13!21;UBERON:0002021!1.93e-12!10;UBERON:0000411!1.93e-12!10;UBERON:0001950!1.93e-12!10;UBERON:0000153!2.71e-12!94;UBERON:0002619!9.50e-12!17;UBERON:0000025!2.02e-08!114;UBERON:0004111!4.24e-08!122;UBERON:0002240!1.62e-07!6;UBERON:0005174!1.62e-07!6;UBERON:0001137!1.62e-07!6;UBERON:0002298!3.83e-07!6;UBERON:0002420!6.01e-07!8;UBERON:0007245!6.01e-07!8;UBERON:0010009!6.01e-07!8;UBERON:0010011!6.01e-07!8;UBERON:0000454!6.01e-07!8;UBERON:0003076!8.01e-07!12;UBERON:0003057!8.01e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.28e-39,54;UBERON:0001049,7.89e-35,52;UBERON:0005068,7.89e-35,52;UBERON:0006241,7.89e-35,52;UBERON:0007135,7.89e-35,52;UBERON:0002020,1.72e-34,34;UBERON:0001017,2.84e-32,73;UBERON:0001016,3.00e-31,75;UBERON:0002346,3.22e-27,64;UBERON:0003075,3.22e-27,64;UBERON:0007284,3.22e-27,64;UBERON:0002021,9.56e-27,10;UBERON:0000411,9.56e-27,10;UBERON:0001950,9.56e-27,10;UBERON:0000955,1.60e-25,47;UBERON:0006238,1.60e-25,47;UBERON:0003528,7.87e-24,29;UBERON:0002791,7.87e-24,29;UBERON:0001893,7.87e-24,29;UBERON:0002616,1.62e-23,46;UBERON:0004121,2.22e-23,95;UBERON:0000924,2.22e-23,95;UBERON:0006601,2.22e-23,95;UBERON:0010371,3.80e-23,73;UBERON:0003080,8.32e-23,40;UBERON:0002780,4.53e-21,39;UBERON:0001890,4.53e-21,39;UBERON:0006240,4.53e-21,39;UBERON:0002619,3.89e-18,17;UBERON:0003056,8.69e-18,49;UBERON:0010314,3.67e-17,92;UBERON:0000956,7.61e-17,21;UBERON:0001869,7.61e-17,21;UBERON:0000203,7.61e-17,21;UBERON:0002240,2.40e-15,6;UBERON:0005174,2.40e-15,6;UBERON:0001137,2.40e-15,6;UBERON:0001948,2.04e-13,5;UBERON:0002315,2.04e-13,5;UBERON:0000025,1.03e-12,114;UBERON:0003076,1.57e-12,12;UBERON:0003057,1.57e-12,12;UBERON:0004111,1.70e-11,122;UBERON:0002950,1.99e-10,4;UBERON:0001891,1.99e-10,4;UBERON:0009616,1.99e-10,4;UBERON:0010286,1.99e-10,4;UBERON:0004684,2.23e-09,3;UBERON:0002275,2.23e-09,3;UBERON:0011216,4.21e-09,194;UBERON:0002257,1.42e-08,3;UBERON:0002038,3.08e-08,3;UBERON:0009663,3.08e-08,3;UBERON:0009661,3.08e-08,3;UBERON:0000125,3.08e-08,3;UBERON:0002308,3.08e-08,3;UBERON:0002420,4.30e-08,8;UBERON:0007245,4.30e-08,8;UBERON:0010009,4.30e-08,8;UBERON:0010011,4.30e-08,8;UBERON:0000454,4.30e-08,8|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,0.311068836925433,0.675029691658453,0,1.71390590642282,3.09215957332259,0.489963196859816,0.0958454710182364,0,3.30347642998166,3.70293280447044,1.99688493233117,0.659431438650969,0.823388792421687,0,1.67509799400829,1.12552522006336,1.98637722109853,2.35702868378934,2.27794689278565,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0.292780797011547,0,0,0,0,0,1.49790639404823,3.66000482254901,1.50785222535437,1.21677024134594,1.27857728665165,1.24672826735736,1.1356888414743,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,0.514523061896422,0,0,0,0,0.128867461322093,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.12385412991454,1.17211686592203,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,5.14114106274891,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,1.11255181206306,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0,0,0,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64751842617067,1.84130094602871,5.15605962095457,3.43706364687375,1.37016503954128,2.2661816921691,2.70009000092722,1.80128481289688,3.17199686288943,2.07104124700728,0,0,0,0.486213434136588,0,0,0,0.206035057238894,0,0.252697211763798,0.25347929989024,0,0.187283014939765,0.128050304809739,0.17230640686684,0,0.231768651889711,0,0,0.147198920134397,0,0,0.476872379894642,0.290692833264657,0.376437521661322,0.0846146078916765,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0.249810577937946,0,0.214871054048298,0,0,0|short_description=p9@Palm2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:242481 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UZT2 | |||
|association_with_transcript=-106bp_to_ENSMUST00000030049,uc008syf.1_5end | |||
|cluster_id=chr4:57447229..57447240,+ | |||
|description=CAGE_peak_9_at_Palm2_5end | |||
|id=chr4:57447229..57447240,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.05e-14!23;CL:0000337!2.05e-14!23;CL:0000540!1.33e-12!33;CL:0000047!1.33e-12!33;CL:0000031!1.33e-12!33;CL:0000404!1.33e-12!33;CL:0000393!1.56e-09!39;CL:0000211!1.56e-09!39;CL:0000221!3.87e-09!44;CL:0000133!3.87e-09!44;CL:0002319!9.66e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.56e-12,23;CL:0000337,3.56e-12,23;CL:0002610,2.23e-09,3;CL:0002612,1.42e-08,3;CL:0002614,3.08e-08,3;CL:0000540,7.97e-08,33;CL:0000047,7.97e-08,33;CL:0000031,7.97e-08,33;CL:0000404,7.97e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.71e-28!73;UBERON:0005743!1.71e-28!73;UBERON:0000073!2.85e-27!75;UBERON:0001016!2.85e-27!75;UBERON:0001049!1.20e-25!52;UBERON:0005068!1.20e-25!52;UBERON:0006241!1.20e-25!52;UBERON:0007135!1.20e-25!52;UBERON:0002020!2.92e-24!34;UBERON:0000033!3.47e-24!63;UBERON:0000955!5.01e-24!50;UBERON:0006238!5.01e-24!50;UBERON:0002616!6.79e-23!49;UBERON:0004121!8.43e-21!102;UBERON:0000924!8.43e-21!102;UBERON:0006601!8.43e-21!102;UBERON:0002346!5.06e-20!71;UBERON:0003075!5.06e-20!71;UBERON:0007284!5.06e-20!71;UBERON:0003056!2.16e-19!49;UBERON:0003080!2.26e-19!40;UBERON:0002791!5.54e-19!29;UBERON:0003528!5.54e-19!29;UBERON:0001893!5.54e-19!29;UBERON:0002780!1.94e-18!39;UBERON:0001890!1.94e-18!39;UBERON:0006240!1.94e-18!39;UBERON:0007811!7.77e-14!86;UBERON:0000956!2.90e-13!21;UBERON:0001869!2.90e-13!21;UBERON:0000203!2.90e-13!21;UBERON:0002021!1.93e-12!10;UBERON:0000411!1.93e-12!10;UBERON:0001950!1.93e-12!10;UBERON:0000153!2.71e-12!94;UBERON:0002619!9.50e-12!17;UBERON:0000025!2.02e-08!114;UBERON:0004111!4.24e-08!122;UBERON:0002240!1.62e-07!6;UBERON:0005174!1.62e-07!6;UBERON:0001137!1.62e-07!6;UBERON:0002298!3.83e-07!6;UBERON:0002420!6.01e-07!8;UBERON:0007245!6.01e-07!8;UBERON:0010009!6.01e-07!8;UBERON:0010011!6.01e-07!8;UBERON:0000454!6.01e-07!8;UBERON:0003076!8.01e-07!12;UBERON:0003057!8.01e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.28e-39,54;UBERON:0001049,7.89e-35,52;UBERON:0005068,7.89e-35,52;UBERON:0006241,7.89e-35,52;UBERON:0007135,7.89e-35,52;UBERON:0002020,1.72e-34,34;UBERON:0001017,2.84e-32,73;UBERON:0001016,3.00e-31,75;UBERON:0002346,3.22e-27,64;UBERON:0003075,3.22e-27,64;UBERON:0007284,3.22e-27,64;UBERON:0002021,9.56e-27,10;UBERON:0000411,9.56e-27,10;UBERON:0001950,9.56e-27,10;UBERON:0000955,1.60e-25,47;UBERON:0006238,1.60e-25,47;UBERON:0003528,7.87e-24,29;UBERON:0002791,7.87e-24,29;UBERON:0001893,7.87e-24,29;UBERON:0002616,1.62e-23,46;UBERON:0004121,2.22e-23,95;UBERON:0000924,2.22e-23,95;UBERON:0006601,2.22e-23,95;UBERON:0010371,3.80e-23,73;UBERON:0003080,8.32e-23,40;UBERON:0002780,4.53e-21,39;UBERON:0001890,4.53e-21,39;UBERON:0006240,4.53e-21,39;UBERON:0002619,3.89e-18,17;UBERON:0003056,8.69e-18,49;UBERON:0010314,3.67e-17,92;UBERON:0000956,7.61e-17,21;UBERON:0001869,7.61e-17,21;UBERON:0000203,7.61e-17,21;UBERON:0002240,2.40e-15,6;UBERON:0005174,2.40e-15,6;UBERON:0001137,2.40e-15,6;UBERON:0001948,2.04e-13,5;UBERON:0002315,2.04e-13,5;UBERON:0000025,1.03e-12,114;UBERON:0003076,1.57e-12,12;UBERON:0003057,1.57e-12,12;UBERON:0004111,1.70e-11,122;UBERON:0002950,1.99e-10,4;UBERON:0001891,1.99e-10,4;UBERON:0009616,1.99e-10,4;UBERON:0010286,1.99e-10,4;UBERON:0004684,2.23e-09,3;UBERON:0002275,2.23e-09,3;UBERON:0011216,4.21e-09,194;UBERON:0002257,1.42e-08,3;UBERON:0002038,3.08e-08,3;UBERON:0009663,3.08e-08,3;UBERON:0009661,3.08e-08,3;UBERON:0000125,3.08e-08,3;UBERON:0002308,3.08e-08,3;UBERON:0002420,4.30e-08,8;UBERON:0007245,4.30e-08,8;UBERON:0010009,4.30e-08,8;UBERON:0010011,4.30e-08,8;UBERON:0000454,4.30e-08,8 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,0.311068836925433,0.675029691658453,0,1.71390590642282,3.09215957332259,0.489963196859816,0.0958454710182364,0,3.30347642998166,3.70293280447044,1.99688493233117,0.659431438650969,0.823388792421687,0,1.67509799400829,1.12552522006336,1.98637722109853,2.35702868378934,2.27794689278565,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0.292780797011547,0,0,0,0,0,1.49790639404823,3.66000482254901,1.50785222535437,1.21677024134594,1.27857728665165,1.24672826735736,1.1356888414743,0,0,0,0,0,0,0.180062129805349,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3131894342054,0.514523061896422,0,0,0,0,0.128867461322093,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.12385412991454,1.17211686592203,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,5.14114106274891,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,1.11255181206306,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0.194451188344048,0,0,0,0.13020438484395,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64751842617067,1.84130094602871,5.15605962095457,3.43706364687375,1.37016503954128,2.2661816921691,2.70009000092722,1.80128481289688,3.17199686288943,2.07104124700728,0,0,0,0.486213434136588,0,0,0,0.206035057238894,0,0.252697211763798,0.25347929989024,0,0.187283014939765,0.128050304809739,0.17230640686684,0,0.231768651889711,0,0,0.147198920134397,0,0,0.476872379894642,0.290692833264657,0.376437521661322,0.0846146078916765,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0.249810577937946,0,0.214871054048298,0,0,0 | |||
|short_description=p9@Palm2 | |||
}} |
Revision as of 15:03, 5 August 2015
Short description: | p9@Palm2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Palm2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -106bp_to_ENSMUST00000030049, uc008syf.1_5end |
EntrezGene: | 242481 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.56e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.56e-12 | 23 |
raphe nuclei neuron | 2.23e-09 | 3 |
neuron of the ventral spinal cord | 1.42e-08 | 3 |
neuron of the substantia nigra | 3.08e-08 | 3 |
neuron | 7.97e-08 | 33 |
neuronal stem cell | 7.97e-08 | 33 |
neuroblast | 7.97e-08 | 33 |
electrically signaling cell | 7.97e-08 | 33 |