FFCP PHASE1:Hg19::chr5:14441081..14441113,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:14441081..14441113,+
|short_description=p8@TRIO
|description=CAGE_peak_8_at_TRIO_5end
|association_with_transcript=153bp_to_ENST00000515710,uc003jfi.1_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7204 | |EntrezGene=7204 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12303 | |HGNC=12303 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=153bp_to_ENST00000515710,uc003jfi.1_5end | |||
|cluster_id=chr5:14441081..14441113,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_8_at_TRIO_5end | |||
|id=chr5:14441081..14441113,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.10e-16!180;CL:0000183!1.67e-15!59;CL:0000680!9.03e-15!57;CL:0000056!9.03e-15!57;CL:0000355!9.03e-15!57;CL:0000187!3.30e-13!54;CL:0000393!2.45e-11!60;CL:0000211!2.45e-11!60;CL:0000057!6.02e-10!75;CL:0000192!2.83e-09!42;CL:0000514!2.83e-09!42;CL:0002539!1.12e-07!10;CL:0000188!2.15e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002539;8.32e-11;10!CL:0000188;3.54e-10;9!CL:0000680;1.03e-07;7!CL:0002570;2.82e-07;8!CL:0000359;5.02e-07;32!CL:0000187;6.92e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.60e-12,58;CL:0000056,1.60e-12,58;CL:0000355,1.60e-12,58;CL:0002539,7.49e-11,10;CL:0000187,2.24e-10,55;CL:0000188,3.48e-10,9;CL:0000393,1.41e-09,61;CL:0000211,1.41e-09,61;CL:0002570,2.24e-07,8;CL:0000359,4.36e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.95e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!6.07e-22!365;UBERON:0004290!4.33e-18!70;UBERON:0000119!6.75e-18!312;UBERON:0003075!7.21e-18!86;UBERON:0007284!7.21e-18!86;UBERON:0001017!1.99e-17!82;UBERON:0005743!2.28e-17!86;UBERON:0002616!4.70e-17!59;UBERON:0000073!5.64e-17!94;UBERON:0001016!5.64e-17!94;UBERON:0000914!7.24e-17!83;UBERON:0002329!7.24e-17!83;UBERON:0003077!7.24e-17!83;UBERON:0003059!7.24e-17!83;UBERON:0007282!7.24e-17!83;UBERON:0009618!7.24e-17!83;UBERON:0007285!7.24e-17!83;UBERON:0002346!1.14e-16!90;UBERON:0000483!1.77e-16!309;UBERON:0002385!3.66e-16!63;UBERON:0001015!3.66e-16!63;UBERON:0000383!3.66e-16!63;UBERON:0000955!3.91e-16!69;UBERON:0006238!3.91e-16!69;UBERON:0001134!1.36e-15!61;UBERON:0002036!1.36e-15!61;UBERON:0003082!1.36e-15!61;UBERON:0001049!3.14e-15!57;UBERON:0005068!3.14e-15!57;UBERON:0006241!3.14e-15!57;UBERON:0007135!3.14e-15!57;UBERON:0000481!3.91e-15!347;UBERON:0000153!2.50e-14!129;UBERON:0007811!2.50e-14!129;UBERON:0000486!5.68e-14!82;UBERON:0000033!9.79e-14!123;UBERON:0003056!2.90e-13!61;UBERON:0007023!7.71e-13!115;UBERON:0002780!1.39e-12!41;UBERON:0001890!1.39e-12!41;UBERON:0006240!1.39e-12!41;UBERON:0003080!5.27e-12!42;UBERON:0001893!1.85e-11!34;UBERON:0002020!2.03e-11!34;UBERON:0003528!2.03e-11!34;UBERON:0001869!3.85e-11!32;UBERON:0002791!4.39e-11!33;UBERON:0005256!8.58e-11!143;UBERON:0004121!8.85e-11!169;UBERON:0000477!9.48e-11!286;UBERON:0000468!1.32e-10!659;UBERON:0002619!1.73e-10!22;UBERON:0000924!2.72e-10!173;UBERON:0006601!2.72e-10!173;UBERON:0001950!2.09e-09!20;UBERON:0001135!2.81e-09!15;UBERON:0000956!4.21e-09!25;UBERON:0000203!4.21e-09!25;UBERON:0000467!8.00e-09!625;UBERON:0000480!1.05e-08!626;UBERON:0000025!1.18e-08!194;UBERON:0004111!5.72e-08!241;UBERON:0000479!9.75e-08!787;UBERON:0002200!1.00e-07!11;UBERON:0006876!1.00e-07!11;UBERON:0000922!1.05e-07!612;UBERON:0004237!1.12e-07!10;UBERON:0004695!1.12e-07!10;UBERON:0002111!1.12e-07!10;UBERON:0004178!1.12e-07!10;UBERON:0002050!3.47e-07!605;UBERON:0005423!3.47e-07!605;UBERON:0000923!7.21e-07!604;UBERON:0005291!7.21e-07!604;UBERON:0006598!7.21e-07!604;UBERON:0002532!7.21e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;9.97e-20;31!UBERON:0001015;9.97e-20;31!UBERON:0000383;9.97e-20;31!UBERON:0001134;6.31e-14;16!UBERON:0002036;6.31e-14;16!UBERON:0004237;8.32e-11;10!UBERON:0004695;8.32e-11;10!UBERON:0002111;8.32e-11;10!UBERON:0004178;8.32e-11;10!UBERON:0005284;2.54e-08;5!UBERON:0001135;4.39e-08;15!UBERON:0002619;6.28e-08;22!UBERON:0006876;7.41e-08;11!UBERON:0001950;1.93e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.79e-15,71;UBERON:0003059,3.79e-15,71;UBERON:0007282,3.79e-15,71;UBERON:0004290,3.79e-15,71;UBERON:0009618,3.79e-15,71;UBERON:0003077,8.39e-15,72;UBERON:0007285,8.39e-15,72;UBERON:0007524,1.82e-14,73;UBERON:0001134,1.37e-13,62;UBERON:0002036,1.37e-13,62;UBERON:0003082,1.37e-13,62;UBERON:0007503,6.30e-13,78;UBERON:0002385,6.68e-13,64;UBERON:0001015,6.68e-13,64;UBERON:0000383,6.68e-13,64;UBERON:0000486,1.38e-11,83;UBERON:0004237,7.49e-11,10;UBERON:0004695,7.49e-11,10;UBERON:0002111,7.49e-11,10;UBERON:0004178,7.49e-11,10;UBERON:0005256,2.25e-09,122;UBERON:0005284,2.12e-08,5;UBERON:0006876,3.70e-08,11;UBERON:0001135,5.39e-08,15;UBERON:0002619,1.30e-07,22;UBERON:0000119,1.92e-07,309;UBERON:0001950,3.91e-07,20;UBERON:0000479,9.61e-07,773 | |||
|phase1_expression=0.54503513781167,1.2846031433459,0.563817616383885,0,0,0,0,3.79031924056099,0.522371256399677,0.737201809504527,0,0,0,0,0.331397375727916,1.34465029290355,1.80808358407193,1.46062018077475,1.46379839637152,1.47745269692145,1.83600622119828,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,1.51255707462509,0.443458794925128,1.49319135678314,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.397227542439656,1.14734648299525,1.41867352879343,0.560677600142307,0,0.24666754841716,0.933633106199299,0.134710672069688,0.490385709340376,6.50836938873205,9.21881479167998,0,1.87296046098192,1.71141546463335,2.83952493048422,1.76151747965647,0.809364721840658,0.98315564691574,0,0.859840221182376,0.206651562351531,0,0,2.73048408581408,0.718618141816238,0.168336113954066,1.25118519871964,0,0,0.30648779579902,0.300476117813194,1.24775401476023,0.89694817844431,0,0,1.20036438433761,0.412210116953756,0,0,1.68776332241266,0,2.52433774244115,0.276149695926898,1.45481451136931,0.710019185033229,0.10075209822764,1.52604533079439,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,1.40241773803446,0.8231480226628,7.3504355692771,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.695582429850461,1.52631302506568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.17638939810309,2.61576041299968,5.5737097223922,0.258543431515556,7.15312891703765,2.535908257668,0,0,0.514414748524284,0,1.5985330740966,1.00084595560703,0.542621605391443,0,2.28015329005615,0,0,0,0.871533458600294,0.299918973546171,0,0,0,0,0,2.85273810081437,2.75084482668401,1.02738161275192,1.25342674267927,0,0,0,0,5.33598710867173,1.30139853857622,0,1.34013012267479,0,0,0,0,0.12269149171914,0,0.542530047399471,0.207970861530807,0.356857977594324,0,0.117141414992713,0,0,0,0,0.368738337083406,0.521301686808497,7.63624514104688,9.60801586670397,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0.512556597022804,0,0,0,9.09837193435668,7.63515418846446,5.99528238900807,7.2695620085707,3.95115286763861,0,0,0,0.229628896329213,0.728364672026868,0.393373244878272,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0.812839312631559,0.501689773854853,0,0,0.223874754722178,0,0.261435451024901,0,0.328014645699706,0,0,0,0,0,0,1.6068392984416,3.86682873168488,1.23238893691716,1.99554777143968,2.06754858726796,2.25582514223375,0.725083469571143,2.04543905798642,1.4245125703478,0,0,0.127612712494584,0,1.39453664789186,3.77774816196768,4.8792608911242,0.616067160352178,1.06461206063404,2.60979897622522,0,0,2.60510858551767,1.58189712359363,1.33441135746677,0.511795582622668,0,9.86430068570404,0,0.899362287916574,1.09814811894422,0.589062011728432,0.808729926293264,0,0.842516912477962,1.46290121726877,0.243713489631284,0,0.545999645631943,0.282810863907425,2.26016233240486,1.10273068709225,0,0,0.578775534266688,0.655894752046633,0.202910376962704,0,0.281695602532241,0.143411352204052,0,0,0.354761064070598,0.422215270595328,0.658589785919804,1.89736586882858,0.699869440489966,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,1.68803299692615,0,0,0,0.796991953004279,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,1.29875337426592,0,0,0,0,0,0,0,0,0.874813840149763,1.90987494426621,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.87754158861589,0,0,0.307801034015188,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,4.01288823649394,0.702793337176017,0,0,0,0.789168805698781,2.41981432097328,1.53036380815245,0.695052375913368,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0.484945082442097,97.5230199941078,1.80784592624426,0,0,0.949661939338181,0,0.0801588202515337,3.41524791582964,0,0,0,0,0,0,0,1.63085047288337,1.98745407993433,0,0,0.600420288709789,0.684526894459965,0,0,0,1.11712960508902,0.458320848023367,0,0,0,0,1.20930250476107,0,0,0,0,0,0,0,2.38568906942791,0.817220436669454,0,0,0,0,0,0.668245123238271,0,0.315222829196793,2.20309270166992,0,0,0,0.714695326373367,0,0,0,0.864221491201268,0,1.19730191562487,0,20.9577266796069,0,0,0,0.129282956361551,0.66116300871345,0,0,0,0.943225830597996,0,0,0,0,0,0,0,0.306345576763462,0,0,0.886068179966986,1.22026264901963,1.1267183763585,0.573409195690071,0.554645257684261,0.869349641179368,0,0,0,0,0,0,0,3.88062487505873,0.701139929541673,4.99325275352352,0,0.50313580350515,1.77962244319307,0.228840068396924,2.11723293268535,2.48699520932449,3.69637874974085,1.11507737014592,0.449803112163605,5.43420349066908,9.95294898818053,0.53168342911599,2.60872530905867,0.1502576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| ||
|short_description=p8@TRIO | |||
}} | }} |
Latest revision as of 19:23, 15 September 2015
Short description: | p8@TRIO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TRIO_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 153bp_to_ENST00000515710, uc003jfi.1_5end |
EntrezGene: | TRIO |
HGNC: | 12303 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.60e-12 | 58 |
myoblast | 1.60e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.60e-12 | 58 |
aortic smooth muscle cell | 7.49e-11 | 10 |
muscle cell | 2.24e-10 | 55 |
cell of skeletal muscle | 3.48e-10 | 9 |
electrically responsive cell | 1.41e-09 | 61 |
electrically active cell | 1.41e-09 | 61 |
mesenchymal stem cell of adipose | 2.24e-07 | 8 |
vascular associated smooth muscle cell | 4.36e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
somite | 3.79e-15 | 71 |
presomitic mesoderm | 3.79e-15 | 71 |
presumptive segmental plate | 3.79e-15 | 71 |
dermomyotome | 3.79e-15 | 71 |
trunk paraxial mesoderm | 3.79e-15 | 71 |
paraxial mesoderm | 8.39e-15 | 72 |
presumptive paraxial mesoderm | 8.39e-15 | 72 |
dense mesenchyme tissue | 1.82e-14 | 73 |
skeletal muscle tissue | 1.37e-13 | 62 |
striated muscle tissue | 1.37e-13 | 62 |
myotome | 1.37e-13 | 62 |
epithelial vesicle | 6.30e-13 | 78 |
muscle tissue | 6.68e-13 | 64 |
musculature | 6.68e-13 | 64 |
musculature of body | 6.68e-13 | 64 |
multilaminar epithelium | 1.38e-11 | 83 |
blood vessel smooth muscle | 7.49e-11 | 10 |
arterial system smooth muscle | 7.49e-11 | 10 |
artery smooth muscle tissue | 7.49e-11 | 10 |
aorta smooth muscle tissue | 7.49e-11 | 10 |
trunk mesenchyme | 2.25e-09 | 122 |
brain vasculature | 2.12e-08 | 5 |
vasculature of organ | 3.70e-08 | 11 |
smooth muscle tissue | 5.39e-08 | 15 |
regional part of cerebral cortex | 1.30e-07 | 22 |
cell layer | 1.92e-07 | 309 |
neocortex | 3.91e-07 | 20 |
tissue | 9.61e-07 | 773 |