FFCP PHASE1:Hg19::chrX:50386648..50386697,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57477 | |EntrezGene=57477 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29215 | |HGNC=29215 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000460112,uc004dpf.1_5end | |association_with_transcript=0bp_to_ENST00000460112,uc004dpf.1_5end | ||
|cluster_id=chrX:50386648..50386697,- | |||
|coexpression_cluster_id=C2447 | |||
|description=CAGE_peak_2_at_SHROOM4_5end | |description=CAGE_peak_2_at_SHROOM4_5end | ||
|id=chrX:50386648..50386697,- | |id=chrX:50386648..50386697,- | ||
|ontology_enrichment_celltype=CL:0002139!2.24e-28!24;CL:0000115!4.17e-26!35;CL:0000071!3.22e-21!18;CL:0002546!3.22e-21!18;CL:0002078!2.09e-18!44;CL:0000213!2.27e-13!57;CL:0000215!2.27e-13!57;CL:1000413!1.46e-11!9;CL:0005020!1.04e-08!6;CL:0002138!1.04e-08!6;CL:0005022!1.04e-08!6;CL:0002543!2.17e-08!6;CL:0002544!2.33e-08!6 | |ontology_enrichment_celltype=CL:0002139!2.24e-28!24;CL:0000115!4.17e-26!35;CL:0000071!3.22e-21!18;CL:0002546!3.22e-21!18;CL:0002078!2.09e-18!44;CL:0000213!2.27e-13!57;CL:0000215!2.27e-13!57;CL:1000413!1.46e-11!9;CL:0005020!1.04e-08!6;CL:0002138!1.04e-08!6;CL:0005022!1.04e-08!6;CL:0002543!2.17e-08!6;CL:0002544!2.33e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002139;6.77e-32;24!CL:0000115;1.54e-26;36!CL:0000071;8.59e-24;18!CL:0002078;1.37e-14;45!CL:1000413;6.64e-13;9!CL:0000213;5.40e-10;58!CL:0000215;5.40e-10;58!CL:0002138;1.21e-09;6!CL:0002543;2.75e-09;6!CL:0002544;2.97e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,6.55e-32,24;CL:0000115,4.20e-31,36;CL:0000071,8.39e-24,18;CL:0002546,8.39e-24,18;CL:0002078,1.38e-22,45;CL:0000213,4.11e-15,58;CL:0000215,4.11e-15,58;CL:1000413,7.12e-13,9;CL:0005020,1.20e-09,6;CL:0002138,1.20e-09,6;CL:0005022,1.20e-09,6;CL:0002543,2.75e-09,6;CL:0002544,2.98e-09,6 | |||
|ontology_enrichment_development_v019=CL:0002546;8.59e-24;18!UBERON:0006601;1.15e-09;82!CL:0005022;1.21e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.90e-69!115;UBERON:0004111!6.75e-30!241;UBERON:0001049!3.28e-28!57;UBERON:0005068!3.28e-28!57;UBERON:0006241!3.28e-28!57;UBERON:0007135!3.28e-28!57;UBERON:0000025!3.64e-27!194;UBERON:0000477!1.16e-25!286;UBERON:0003080!2.09e-23!42;UBERON:0002616!8.27e-23!59;UBERON:0002780!2.45e-22!41;UBERON:0001890!2.45e-22!41;UBERON:0006240!2.45e-22!41;UBERON:0002346!1.53e-21!90;UBERON:0001986!3.22e-21!18;UBERON:0004638!3.22e-21!18;UBERON:0004852!3.22e-21!18;UBERON:0003075!5.64e-21!86;UBERON:0007284!5.64e-21!86;UBERON:0001017!2.03e-19!82;UBERON:0000955!3.11e-19!69;UBERON:0006238!3.11e-19!69;UBERON:0005743!6.39e-19!86;UBERON:0002020!1.04e-18!34;UBERON:0003528!1.04e-18!34;UBERON:0001893!3.17e-18!34;UBERON:0002791!1.19e-17!33;UBERON:0001869!4.88e-17!32;UBERON:0000073!1.27e-16!94;UBERON:0001016!1.27e-16!94;UBERON:0000487!4.32e-16!22;UBERON:0002619!1.12e-14!22;UBERON:0003056!1.57e-14!61;UBERON:0000483!3.67e-14!309;UBERON:0000119!9.72e-14!312;UBERON:0006914!2.33e-13!25;UBERON:0001950!3.28e-13!20;UBERON:0000956!3.09e-12!25;UBERON:0000203!3.09e-12!25;UBERON:0003915!1.46e-11!9;UBERON:0004700!1.46e-11!9;UBERON:0001917!1.46e-11!9;UBERON:0000153!3.04e-11!129;UBERON:0007811!3.04e-11!129;UBERON:0000055!4.97e-11!69;UBERON:0004872!3.37e-10!84;UBERON:0000033!5.60e-10!123;UBERON:0000468!9.68e-10!659;UBERON:0001009!1.95e-09!113;UBERON:0000924!3.03e-09!173;UBERON:0006601!3.03e-09!173;UBERON:0002049!7.12e-09!79;UBERON:0007798!7.12e-09!79;UBERON:0004121!9.62e-09!169;UBERON:0000467!1.94e-08!625;UBERON:0000480!2.34e-08!626;UBERON:0002308!2.81e-08!9;UBERON:0000125!2.81e-08!9;UBERON:0002298!3.48e-08!8;UBERON:0002420!3.71e-08!9;UBERON:0007245!3.71e-08!9;UBERON:0010009!3.71e-08!9;UBERON:0010011!3.71e-08!9;UBERON:0000454!3.71e-08!9;UBERON:0004535!5.53e-08!110;UBERON:0001981!6.36e-08!60;UBERON:0007500!6.36e-08!60;UBERON:0004537!6.36e-08!60;UBERON:0006965!6.36e-08!60;UBERON:0000064!6.47e-08!219;UBERON:0003914!6.67e-08!118;UBERON:0003103!1.93e-07!69;UBERON:0002465!2.17e-07!10;UBERON:0001871!4.85e-07!7;UBERON:0000481!6.32e-07!347;UBERON:0001638!8.23e-07!9;UBERON:0003920!8.23e-07!9;UBERON:0004582!8.23e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.59e-24;18!UBERON:0001986;8.59e-24;18!UBERON:0004852;8.59e-24;18!UBERON:0000487;2.88e-18;22!UBERON:0007023;8.23e-18;114!UBERON:0002780;6.68e-16;41!UBERON:0001890;6.68e-16;41!UBERON:0003528;1.45e-15;34!UBERON:0002020;1.45e-15;34!UBERON:0006914;2.60e-15;25!UBERON:0001893;7.08e-15;34!UBERON:0000073;8.78e-15;53!UBERON:0002616;8.78e-15;53!UBERON:0002791;1.38e-14;32!UBERON:0001869;1.47e-14;32!UBERON:0002619;1.89e-13;22!UBERON:0003915;6.64e-13;9!UBERON:0004700;6.64e-13;9!UBERON:0001917;6.64e-13;9!UBERON:0001950;7.38e-12;20!UBERON:0000956;2.80e-11;25!UBERON:0000203;2.80e-11;25!UBERON:0000490;2.04e-09;33!UBERON:0000125;3.29e-09;9!UBERON:0002308;3.29e-09;9!UBERON:0001017;4.61e-09;75!UBERON:0002420;5.45e-09;9!UBERON:0007245;5.45e-09;9!UBERON:0010009;5.45e-09;9!UBERON:0010011;5.45e-09;9!UBERON:0000454;5.45e-09;9!UBERON:0000955;1.64e-08;68!UBERON:0002465;3.55e-08;10!UBERON:0001638;1.24e-07;9!UBERON:0003920;1.24e-07;9!UBERON:0004582;1.24e-07;9!UBERON:0001016;1.34e-07;83!UBERON:0009663;2.67e-07;7!UBERON:0002298;5.05e-07;6!UBERON:0001473;6.84e-07;8!UBERON:0004536;6.84e-07;8!UBERON:0006558;6.84e-07;8!UBERON:0000055;9.91e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.99e-69,114;UBERON:0004111,2.71e-29,240;UBERON:0001049,2.84e-28,56;UBERON:0005068,2.84e-28,56;UBERON:0006241,2.84e-28,56;UBERON:0007135,2.84e-28,56;UBERON:0000025,3.30e-26,192;UBERON:0000073,4.13e-26,53;UBERON:0002616,4.13e-26,53;UBERON:0004638,8.39e-24,18;UBERON:0001986,8.39e-24,18;UBERON:0004852,8.39e-24,18;UBERON:0002780,1.63e-22,41;UBERON:0001890,1.63e-22,41;UBERON:0003080,1.63e-22,41;UBERON:0006240,1.63e-22,41;UBERON:0002346,5.49e-22,86;UBERON:0003075,2.88e-21,82;UBERON:0007284,2.88e-21,82;UBERON:0000955,1.71e-19,68;UBERON:0006238,1.71e-19,68;UBERON:0001017,3.22e-19,81;UBERON:0003528,1.92e-18,34;UBERON:0002020,1.92e-18,34;UBERON:0000487,2.82e-18,22;UBERON:0001893,6.22e-18,34;UBERON:0010314,1.75e-17,132;UBERON:0001016,5.42e-17,89;UBERON:0002791,1.20e-16,32;UBERON:0001869,1.29e-16,32;UBERON:0006914,2.56e-15,25;UBERON:0010371,1.25e-14,104;UBERON:0003056,3.14e-14,61;UBERON:0000483,7.93e-14,306;UBERON:0002619,1.47e-13,22;UBERON:0000119,1.92e-13,309;UBERON:0003915,7.12e-13,9;UBERON:0004700,7.12e-13,9;UBERON:0001917,7.12e-13,9;UBERON:0000055,3.01e-12,68;UBERON:0001950,5.89e-12,20;UBERON:0000956,2.25e-11,25;UBERON:0000203,2.25e-11,25;UBERON:0011216,6.24e-11,223;UBERON:0002049,1.95e-09,78;UBERON:0007798,1.95e-09,78;UBERON:0000125,3.68e-09,9;UBERON:0002308,3.68e-09,9;UBERON:0004872,4.71e-09,83;UBERON:0002420,5.04e-09,9;UBERON:0007245,5.04e-09,9;UBERON:0010009,5.04e-09,9;UBERON:0010011,5.04e-09,9;UBERON:0000454,5.04e-09,9;UBERON:0001009,5.09e-09,112;UBERON:0004121,8.75e-09,171;UBERON:0000924,8.75e-09,171;UBERON:0006601,8.75e-09,171;UBERON:0007500,1.22e-08,59;UBERON:0001981,1.22e-08,59;UBERON:0004537,1.22e-08,59;UBERON:0006965,1.22e-08,59;UBERON:0002465,2.74e-08,10;UBERON:0003103,1.22e-07,68;UBERON:0001638,1.23e-07,9;UBERON:0003920,1.23e-07,9;UBERON:0004582,1.23e-07,9;UBERON:0004535,1.68e-07,109;UBERON:0002050,1.78e-07,564;UBERON:0000923,2.39e-07,560;UBERON:0010316,2.39e-07,560;UBERON:0005291,2.39e-07,560;UBERON:0006598,2.39e-07,560;UBERON:0010317,2.39e-07,560;UBERON:0002532,2.39e-07,560;UBERON:0009663,3.13e-07,7;UBERON:0000922,3.27e-07,592;UBERON:0005423,3.81e-07,581;UBERON:0002298,4.22e-07,6;UBERON:0003914,4.24e-07,117;UBERON:0003076,5.13e-07,15;UBERON:0003057,5.13e-07,15;UBERON:0001473,6.80e-07,8;UBERON:0004536,6.80e-07,8;UBERON:0006558,6.80e-07,8 | |||
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| ||
|short_description=p2@SHROOM4 | |short_description=p2@SHROOM4 | ||
}} | }} |
Latest revision as of 22:30, 15 September 2015
Short description: | p2@SHROOM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHROOM4_5end |
Coexpression cluster: | C2447_Renal_lung_Endothelial_adipose_heart_Hepatic_mature |
Association with transcript: | 0bp_to_ENST00000460112, uc004dpf.1_5end |
EntrezGene: | SHROOM4 |
HGNC: | 29215 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 6.55e-32 | 24 |
endothelial cell | 4.20e-31 | 36 |
blood vessel endothelial cell | 8.39e-24 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.39e-24 | 18 |
meso-epithelial cell | 1.38e-22 | 45 |
lining cell | 4.11e-15 | 58 |
barrier cell | 4.11e-15 | 58 |
endothelial cell of artery | 7.12e-13 | 9 |
lymphangioblast | 1.20e-09 | 6 |
endothelial cell of lymphatic vessel | 1.20e-09 | 6 |
vascular lymphangioblast | 1.20e-09 | 6 |
vein endothelial cell | 2.75e-09 | 6 |
aortic endothelial cell | 2.98e-09 | 6 |