FFCP PHASE1:Hg19::chr15:42697018..42697035,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1480 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BQC8,P20807,A4FTZ9 | |||
|association_with_transcript=41bp_to_ENST00000337571,ENST00000397204,NM_173089,NM_173090,uc001zpr.1,uc001zps.1,uc001zpt.1,uc010bcv.1_5end | |||
|cluster_id=chr15:42697018..42697035,+ | |||
|coexpression_cluster_id=C327 | |||
|description=CAGE_peak_6_at_CAPN3_5end | |||
|id=chr15:42697018..42697035,+ | |||
|ontology_enrichment_celltype=CL:0000148!2.50e-21!10;CL:0000541!2.50e-21!10;CL:0000147!1.05e-20!14;CL:0000710!1.84e-09!20;CL:0002567!2.25e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.10e-17;10!CL:0000147;2.08e-15;14!CL:0002567;3.92e-12;3!CL:0000710;3.91e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.18e-17,10;CL:0000541,2.18e-17,10;CL:0000147,2.18e-15,14;CL:0002567,3.99e-12,3;CL:0000710,3.98e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.07e-20;82!UBERON:0010122;3.40e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;4.38e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,4.16e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.27e-61!57;UBERON:0005068!1.27e-61!57;UBERON:0006241!1.27e-61!57;UBERON:0007135!1.27e-61!57;UBERON:0007023!1.98e-53!115;UBERON:0005743!9.11e-51!86;UBERON:0002616!4.35e-50!59;UBERON:0001017!5.68e-47!82;UBERON:0002780!6.94e-47!41;UBERON:0001890!6.94e-47!41;UBERON:0006240!6.94e-47!41;UBERON:0000073!7.08e-47!94;UBERON:0001016!7.08e-47!94;UBERON:0003075!7.43e-47!86;UBERON:0007284!7.43e-47!86;UBERON:0003080!1.48e-45!42;UBERON:0000955!3.87e-45!69;UBERON:0006238!3.87e-45!69;UBERON:0002346!3.73e-44!90;UBERON:0002020!1.97e-43!34;UBERON:0003528!1.97e-43!34;UBERON:0001893!2.19e-43!34;UBERON:0002791!1.79e-41!33;UBERON:0001869!3.40e-39!32;UBERON:0003056!9.47e-35!61;UBERON:0002619!1.69e-30!22;UBERON:0001950!8.41e-27!20;UBERON:0000033!9.78e-27!123;UBERON:0000956!2.57e-26!25;UBERON:0000203!2.57e-26!25;UBERON:0000153!6.94e-25!129;UBERON:0007811!6.94e-25!129;UBERON:0004121!1.58e-24!169;UBERON:0000924!1.28e-23!173;UBERON:0006601!1.28e-23!173;UBERON:0002308!1.22e-19!9;UBERON:0000125!1.22e-19!9;UBERON:0002420!5.57e-19!9;UBERON:0007245!5.57e-19!9;UBERON:0010009!5.57e-19!9;UBERON:0010011!5.57e-19!9;UBERON:0000454!5.57e-19!9;UBERON:0003076!1.65e-16!15;UBERON:0003057!1.65e-16!15;UBERON:0009663!1.97e-15!7;UBERON:0002298!3.77e-14!8;UBERON:0000200!3.37e-13!6;UBERON:0004732!6.34e-13!13;UBERON:0000025!2.18e-12!194;UBERON:0004733!3.68e-11!12;UBERON:0002028!3.68e-11!12;UBERON:0007277!3.68e-11!12;UBERON:0000349!5.06e-11!5;UBERON:0001871!1.89e-09!7;UBERON:0004111!2.36e-09!241;UBERON:0000483!3.65e-09!309;UBERON:0000369!4.59e-09!4;UBERON:0002435!4.59e-09!4;UBERON:0000204!4.59e-09!4;UBERON:0010082!4.59e-09!4;UBERON:0000119!6.09e-09!312;UBERON:0000064!1.33e-08!219;UBERON:0006331!4.50e-08!3;UBERON:0000988!5.16e-08!3;UBERON:0001896!7.41e-08!3;UBERON:0005290!7.41e-08!3;UBERON:0010096!7.41e-08!3;UBERON:0001872!1.21e-07!5;UBERON:0002240!1.21e-07!3;UBERON:0000475!1.67e-07!365;UBERON:0002021!1.79e-07!5;UBERON:0002771!2.49e-07!3;UBERON:0005383!4.63e-07!3;UBERON:0005382!4.63e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.72e-58;34!UBERON:0003528;7.89e-57;34!UBERON:0002020;7.89e-57;34!UBERON:0002791;6.00e-55;32!UBERON:0001869;9.58e-55;32!UBERON:0002780;2.90e-49;41!UBERON:0001890;2.90e-49;41!UBERON:0002619;2.18e-47;22!UBERON:0000073;4.78e-46;53!UBERON:0002616;4.78e-46;53!UBERON:0001950;1.22e-41;20!UBERON:0000956;2.37e-41;25!UBERON:0000203;2.37e-41;25!UBERON:0000125;1.35e-29;9!UBERON:0002308;1.35e-29;9!UBERON:0002420;1.53e-28;9!UBERON:0007245;1.53e-28;9!UBERON:0010009;1.53e-28;9!UBERON:0010011;1.53e-28;9!UBERON:0000454;1.53e-28;9!UBERON:0000955;2.14e-27;68!UBERON:0001017;2.15e-26;75!UBERON:0009663;4.82e-23;7!UBERON:0001016;5.42e-22;83!UBERON:0002298;3.79e-21;6!UBERON:0000200;1.24e-19;6!UBERON:0007023;1.55e-16;114!UBERON:0000349;3.67e-16;5!UBERON:0004732;4.34e-16;13!UBERON:0004733;1.73e-13;12!UBERON:0002028;1.73e-13;12!UBERON:0000369;3.77e-13;4!UBERON:0002435;3.77e-13;4!UBERON:0000204;3.77e-13;4!UBERON:0000988;1.44e-11;3!UBERON:0001871;1.59e-11;6!UBERON:0001896;2.57e-11;3!UBERON:0005290;2.57e-11;3!UBERON:0001872;3.70e-11;5!UBERON:0002021;6.05e-11;5!UBERON:0001870;1.30e-10;3!UBERON:0005383;4.70e-10;3!UBERON:0005382;4.70e-10;3!UBERON:0011216;1.26e-08;132!UBERON:0001897;2.45e-08;2!UBERON:0010225;2.45e-08;2!UBERON:0005162;2.67e-08;2!UBERON:0000122;2.67e-08;2!UBERON:0002148;2.87e-08;2!UBERON:0001875;2.87e-08;2!UBERON:0006331;2.87e-08;2!UBERON:0009662;2.87e-08;2!UBERON:0006514;2.87e-08;2!UBERON:0010314;4.11e-08;132!UBERON:0002771;1.27e-07;2!UBERON:0001954;1.53e-07;2!UBERON:0002702;1.53e-07;2!UBERON:0003022;1.53e-07;2!UBERON:0002421;1.53e-07;2!UBERON:0002600;1.53e-07;2!UBERON:0001876;3.34e-07;2!UBERON:0001873;3.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.06e-87,56;UBERON:0005068,7.06e-87,56;UBERON:0006241,7.06e-87,56;UBERON:0007135,7.06e-87,56;UBERON:0000073,3.19e-82,53;UBERON:0002616,3.19e-82,53;UBERON:0002780,7.42e-70,41;UBERON:0001890,7.42e-70,41;UBERON:0003080,7.42e-70,41;UBERON:0006240,7.42e-70,41;UBERON:0003528,2.97e-68,34;UBERON:0002020,2.97e-68,34;UBERON:0001893,3.49e-68,34;UBERON:0003075,4.50e-66,82;UBERON:0007284,4.50e-66,82;UBERON:0000955,6.97e-65,68;UBERON:0006238,6.97e-65,68;UBERON:0001017,6.15e-63,81;UBERON:0002346,1.49e-62,86;UBERON:0002791,7.01e-62,32;UBERON:0001869,1.32e-61,32;UBERON:0001016,7.77e-59,89;UBERON:0010371,1.20e-55,104;UBERON:0003056,1.87e-54,61;UBERON:0007023,7.25e-53,114;UBERON:0002619,1.95e-47,22;UBERON:0001950,1.19e-41,20;UBERON:0000956,2.15e-41,25;UBERON:0000203,2.15e-41,25;UBERON:0010314,1.87e-39,132;UBERON:0004121,1.17e-32,171;UBERON:0000924,1.17e-32,171;UBERON:0006601,1.17e-32,171;UBERON:0000125,1.29e-29,9;UBERON:0002308,1.29e-29,9;UBERON:0002420,1.36e-28,9;UBERON:0007245,1.36e-28,9;UBERON:0010009,1.36e-28,9;UBERON:0010011,1.36e-28,9;UBERON:0000454,1.36e-28,9;UBERON:0009663,4.51e-23,7;UBERON:0002298,3.72e-21,6;UBERON:0011216,5.33e-20,223;UBERON:0000025,6.63e-20,192;UBERON:0000200,1.33e-19,6;UBERON:0003076,1.24e-17,15;UBERON:0003057,1.24e-17,15;UBERON:0000349,3.17e-16,5;UBERON:0004732,4.66e-16,13;UBERON:0004111,5.51e-14,240;UBERON:0004733,1.79e-13,12;UBERON:0002028,1.79e-13,12;UBERON:0007277,1.79e-13,12;UBERON:0000369,3.42e-13,4;UBERON:0002435,3.42e-13,4;UBERON:0000204,3.42e-13,4;UBERON:0010082,3.42e-13,4;UBERON:0000483,7.23e-13,306;UBERON:0000119,1.22e-12,309;UBERON:0000988,1.44e-11,3;UBERON:0001871,1.59e-11,6;UBERON:0001896,2.52e-11,3;UBERON:0005290,2.52e-11,3;UBERON:0010096,2.52e-11,3;UBERON:0001872,3.24e-11,5;UBERON:0002021,5.97e-11,5;UBERON:0001870,1.54e-10,3;UBERON:0005383,4.27e-10,3;UBERON:0005382,4.27e-10,3;UBERON:0001897,2.36e-08,2;UBERON:0010225,2.36e-08,2;UBERON:0005162,2.82e-08,2;UBERON:0000122,2.82e-08,2;UBERON:0002148,2.92e-08,2;UBERON:0006331,2.92e-08,2;UBERON:0009662,2.92e-08,2;UBERON:0001875,3.03e-08,2;UBERON:0006514,3.03e-08,2;UBERON:0002771,1.30e-07,2;UBERON:0001954,1.39e-07,2;UBERON:0003022,1.39e-07,2;UBERON:0002421,1.39e-07,2;UBERON:0002600,1.39e-07,2;UBERON:0002702,1.76e-07,2;UBERON:0001876,3.18e-07,2;UBERON:0001873,3.29e-07,2;UBERON:0010122,3.29e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,1.24396869324463,0.432359860250884,0.88369703398466,30.7329808374098,39.3448078325026,32.8208852188132,15.3965201420435,28.7916979569306,3.60411669412701,31.4409075893636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56450125116389,0,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,1.9882952955326,3.79807424308384,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,8.62743312905217,0,0,0,0,0,0,0,0,0,0,2.65722415744152,2.77371808838438,0,0.884634079449797,2.36438095162838,3.29078095730959,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0.104421949505455,21.703164819778,0,21.5523290067312,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,3.84398670132466,0,0,0,0,0,0,0.677942222341597,0,0,6.33107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2092463516154,10.5417141746835,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.0787831823072236,0,0,0,0,4.77137813885582,4.63091580779357,0,0,0,0,0,5.22446187259012,0,1.49730843868477,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7039933743244,10.3141429359298,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,4.51497180137264,4.13130071331449,6.88091034828085,11.0929051536852,12.2950877823939,0,0,13.80006969629,6.56570267153425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76872455576384,0,0,5.11556213761404,0.779441235357554,0.132864840313363,1.4720885483026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.64327778647868,4.25089728976755,5.10828348982884,4.92279274177812,0,7.7456122759924,9.20411180101551,8.56616521554926,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26793160023478,8.59185908475232,2.89361515101658,8.94162923734086,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,12.914249265598,8.68200611029608,0,0,0,3.92788974790005,0,0.913158720509496,0,0,2.07281978112303,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,2.84127428655144,0,0,0,20.2197721128394,13.3670880147189,0.8453114551668,0,0,0,0,0,0,0,0,0,15.9106937298111,0,7.00312348966421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7792027129641,16.4458463420413,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@CAPN3 | |||
}} |
Latest revision as of 16:03, 17 September 2015
Short description: | p6@CAPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CAPN3_5end |
Coexpression cluster: | C327_Melanocyte_corpus_thalamus_substantia_melanoma_globus_optic |
Association with transcript: | 41bp_to_ENST00000337571, ENST00000397204, NM_173089, NM_173090, uc001zpr.1, uc001zps.1, uc001zpt.1, uc010bcv.1_5end |
EntrezGene: | CAPN3 |
HGNC: | 1480 |
UniProt: | Q9BQC8P20807A4FTZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.18e-17 | 10 |
melanoblast | 2.18e-17 | 10 |
pigment cell | 2.18e-15 | 14 |
light melanocyte | 3.99e-12 | 3 |
neurecto-epithelial cell | 3.98e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
melanoma | 4.16e-08 | 2 |