FFCP PHASE1:Hg19::chr1:40506393..40506453,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10487 | |EntrezGene=10487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20040 | |HGNC=20040 | ||
|TSSclassifier=strong | |||
|UniProt=Q01518,Q5T0S3,Q5T0R2,Q5T0R6,Q5T0R5,Q5T0R4,Q5T0R1,Q5T0R9,F5H6Z3 | |UniProt=Q01518,Q5T0S3,Q5T0R2,Q5T0R6,Q5T0R5,Q5T0R4,Q5T0R1,Q5T0R9,F5H6Z3 | ||
|association_with_transcript=0bp_to_ENST00000340450,ENST00000372792,ENST00000372794,ENST00000372798,ENST00000372805,ENST00000414281,ENST00000417287,ENST00000420216,ENST00000424977,ENST00000427843,ENST00000435719,ENST00000538246_5end | |association_with_transcript=0bp_to_ENST00000340450,ENST00000372792,ENST00000372794,ENST00000372798,ENST00000372805,ENST00000414281,ENST00000417287,ENST00000420216,ENST00000424977,ENST00000427843,ENST00000435719,ENST00000538246_5end | ||
|cluster_id=chr1:40506393..40506453,+ | |||
|coexpression_cluster_id=C1580 | |||
|description=CAGE_peak_1_at_CAP1_5end | |description=CAGE_peak_1_at_CAP1_5end | ||
|id=chr1:40506393..40506453,+ | |id=chr1:40506393..40506453,+ | ||
|ontology_enrichment_celltype=CL:0002371!8.14e-31!591;CL:0000144!2.71e-29!625;CL:0000723!3.66e-26!436;CL:0000048!1.18e-25!430;CL:0000003!3.81e-25!722;CL:0000034!8.69e-24!444;CL:0000766!5.81e-23!76;CL:0000548!9.88e-23!679;CL:0000004!9.88e-23!679;CL:0000255!9.88e-23!679;CL:0000012!7.16e-22!682;CL:0000557!1.29e-18!71;CL:0002009!6.99e-18!65;CL:0002194!1.05e-17!63;CL:0000576!1.05e-17!63;CL:0000040!1.05e-17!63;CL:0000559!1.05e-17!63;CL:0000839!1.53e-17!70;CL:0000134!7.47e-16!358;CL:0002320!5.88e-15!365;CL:0000063!1.36e-13!578;CL:0000219!1.70e-13!390;CL:0000763!6.93e-13!112;CL:0000049!6.93e-13!112;CL:0002057!2.19e-12!42;CL:0000055!7.29e-12!180;CL:0000359!1.21e-11!32;CL:0000860!2.30e-10!45;CL:0000192!4.37e-10!42;CL:0000514!4.37e-10!42;CL:0000680!2.85e-09!57;CL:0000056!2.85e-09!57;CL:0000355!2.85e-09!57;CL:0000187!1.31e-08!54;CL:0000738!1.32e-08!140;CL:0000057!3.88e-07!75 | |ontology_enrichment_celltype=CL:0002371!8.14e-31!591;CL:0000144!2.71e-29!625;CL:0000723!3.66e-26!436;CL:0000048!1.18e-25!430;CL:0000003!3.81e-25!722;CL:0000034!8.69e-24!444;CL:0000766!5.81e-23!76;CL:0000548!9.88e-23!679;CL:0000004!9.88e-23!679;CL:0000255!9.88e-23!679;CL:0000012!7.16e-22!682;CL:0000557!1.29e-18!71;CL:0002009!6.99e-18!65;CL:0002194!1.05e-17!63;CL:0000576!1.05e-17!63;CL:0000040!1.05e-17!63;CL:0000559!1.05e-17!63;CL:0000839!1.53e-17!70;CL:0000134!7.47e-16!358;CL:0002320!5.88e-15!365;CL:0000063!1.36e-13!578;CL:0000219!1.70e-13!390;CL:0000763!6.93e-13!112;CL:0000049!6.93e-13!112;CL:0002057!2.19e-12!42;CL:0000055!7.29e-12!180;CL:0000359!1.21e-11!32;CL:0000860!2.30e-10!45;CL:0000192!4.37e-10!42;CL:0000514!4.37e-10!42;CL:0000680!2.85e-09!57;CL:0000056!2.85e-09!57;CL:0000355!2.85e-09!57;CL:0000187!1.31e-08!54;CL:0000738!1.32e-08!140;CL:0000057!3.88e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.38e-11;32!CL:0000766;2.50e-10;69!CL:0000473;2.50e-10;39!CL:0000234;2.50e-10;39!CL:0000576;3.82e-10;48!CL:0000860;1.46e-09;33!CL:0002057;1.46e-09;33!CL:0000192;4.23e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,4.19e-27,433;CL:0000048,1.36e-26,427;CL:0000766,4.62e-25,72;CL:0000034,1.12e-24,441;CL:0000557,1.72e-20,67;CL:0002009,7.81e-20,61;CL:0002194,1.08e-19,59;CL:0000576,1.08e-19,59;CL:0000040,1.08e-19,59;CL:0000559,1.08e-19,59;CL:0000839,2.38e-19,66;CL:0000134,9.03e-17,354;CL:0002320,7.75e-16,361;CL:0000473,3.21e-15,48;CL:0000234,3.21e-15,48;CL:0000219,2.64e-14,386;CL:0000763,7.12e-14,108;CL:0000049,7.12e-14,108;CL:0000860,2.19e-12,42;CL:0002057,2.19e-12,42;CL:0000359,1.21e-11,32;CL:0000192,1.13e-09,43;CL:0000514,1.13e-09,43;CL:0000738,3.13e-09,136;CL:0000680,5.81e-09,58;CL:0000056,5.81e-09,58;CL:0000355,5.81e-09,58;CL:0000187,2.63e-08,55;CL:0000057,2.24e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;5.27e-09;42!CL:0000514;4.23e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.00e-22!167;UBERON:0003081!2.27e-18!216;UBERON:0002390!2.36e-17!102;UBERON:0003061!2.36e-17!102;UBERON:0002371!4.92e-17!80;UBERON:0002193!1.21e-16!112;UBERON:0004765!1.01e-15!101;UBERON:0001434!1.01e-15!101;UBERON:0001474!5.32e-15!86;UBERON:0002384!3.22e-14!375;UBERON:0001637!5.66e-10!42;UBERON:0003509!5.66e-10!42;UBERON:0004572!5.66e-10!42;UBERON:0002405!1.07e-09!115;UBERON:0000926!2.41e-09!448;UBERON:0004120!2.41e-09!448;UBERON:0006603!2.41e-09!448;UBERON:0000914!3.27e-09!83;UBERON:0002329!3.27e-09!83;UBERON:0003077!3.27e-09!83;UBERON:0003059!3.27e-09!83;UBERON:0007282!3.27e-09!83;UBERON:0009618!3.27e-09!83;UBERON:0007285!3.27e-09!83;UBERON:0004535!3.79e-09!110;UBERON:0000486!3.75e-08!82;UBERON:0004573!4.09e-08!33;UBERON:0004571!4.09e-08!33;UBERON:0001009!6.95e-08!113;UBERON:0004290!1.06e-07!70;UBERON:0001981!1.88e-07!60;UBERON:0007500!1.88e-07!60;UBERON:0004537!1.88e-07!60;UBERON:0006965!1.88e-07!60;UBERON:0002049!2.10e-07!79;UBERON:0007798!2.10e-07!79;UBERON:0004872!3.27e-07!84;UBERON:0001134!8.70e-07!61;UBERON:0002036!8.70e-07!61;UBERON:0003082!8.70e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.53e-07;33!UBERON:0004571;2.53e-07;33!UBERON:0001637;4.12e-07;42!UBERON:0003509;4.12e-07;42!UBERON:0004572;4.12e-07;42 | |||
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| ||
|short_description=p1@CAP1 | |short_description=p1@CAP1 | ||
}} | }} |
Latest revision as of 00:43, 18 September 2015
Short description: | p1@CAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAP1_5end |
Coexpression cluster: | C1580_acute_Neutrophils_Mallassezderived_migratory_Smooth_Preadipocyte_small |
Association with transcript: | 0bp_to_ENST00000340450, ENST00000372792, ENST00000372794, ENST00000372798, ENST00000372805, ENST00000414281, ENST00000417287, ENST00000420216, ENST00000424977, ENST00000427843, ENST00000435719, ENST00000538246_5end |
EntrezGene: | CAP1 |
HGNC: | 20040 |
UniProt: | Q01518Q5T0S3Q5T0R2Q5T0R6Q5T0R5Q5T0R4Q5T0R1Q5T0R9F5H6Z3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 4.19e-27 | 433 |
multi fate stem cell | 1.36e-26 | 427 |
myeloid leukocyte | 4.62e-25 | 72 |
stem cell | 1.12e-24 | 441 |
granulocyte monocyte progenitor cell | 1.72e-20 | 67 |
macrophage dendritic cell progenitor | 7.81e-20 | 61 |
monopoietic cell | 1.08e-19 | 59 |
monocyte | 1.08e-19 | 59 |
monoblast | 1.08e-19 | 59 |
promonocyte | 1.08e-19 | 59 |
myeloid lineage restricted progenitor cell | 2.38e-19 | 66 |
mesenchymal cell | 9.03e-17 | 354 |
connective tissue cell | 7.75e-16 | 361 |
defensive cell | 3.21e-15 | 48 |
phagocyte | 3.21e-15 | 48 |
motile cell | 2.64e-14 | 386 |
myeloid cell | 7.12e-14 | 108 |
common myeloid progenitor | 7.12e-14 | 108 |
classical monocyte | 2.19e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.19e-12 | 42 |
vascular associated smooth muscle cell | 1.21e-11 | 32 |
smooth muscle cell | 1.13e-09 | 43 |
smooth muscle myoblast | 1.13e-09 | 43 |
leukocyte | 3.13e-09 | 136 |
muscle precursor cell | 5.81e-09 | 58 |
myoblast | 5.81e-09 | 58 |
multi-potent skeletal muscle stem cell | 5.81e-09 | 58 |
muscle cell | 2.63e-08 | 55 |
fibroblast | 2.24e-07 | 76 |