FFCP PHASE1:Hg19::chr10:73579502..73579547,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:73579502..73579547,- to FFCP PHASE1:Hg19::chr10:73579502..73579547,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5660 | |EntrezGene=5660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9498 | |HGNC=9498 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-474bp_to_ENST00000495196_5end | |||
|cluster_id=chr10:73579502..73579547,- | |||
|coexpression_cluster_id=C71 | |||
|description=CAGE_peak_8_at_PSAP_5end | |||
|id=chr10:73579502..73579547,- | |||
|ontology_enrichment_celltype=CL:0002194!1.19e-24!63;CL:0000576!1.19e-24!63;CL:0000040!1.19e-24!63;CL:0000559!1.19e-24!63;CL:0002057!1.46e-24!42;CL:0000860!3.29e-23!45;CL:0000766!4.23e-23!76;CL:0002009!1.47e-22!65;CL:0000839!1.27e-21!70;CL:0000557!9.84e-20!71;CL:0000763!8.72e-07!112;CL:0000049!8.72e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.03e-21;39!CL:0000234;4.03e-21;39!CL:0000860;6.01e-21;33!CL:0002057;6.01e-21;33!CL:0000576;1.85e-17;48!CL:0000766;2.19e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.39e-31,48;CL:0000234,1.39e-31,48;CL:0002194,1.60e-30,59;CL:0000576,1.60e-30,59;CL:0000040,1.60e-30,59;CL:0000559,1.60e-30,59;CL:0002009,1.91e-28,61;CL:0000766,1.23e-27,72;CL:0000860,2.52e-27,42;CL:0002057,2.52e-27,42;CL:0000839,4.65e-25,66;CL:0000557,3.28e-24,67;CL:0000763,6.29e-09,108;CL:0000049,6.29e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.85e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.72e-17!80;UBERON:0003081!2.11e-15!216;UBERON:0002193!9.15e-15!112;UBERON:0002390!1.60e-14!102;UBERON:0003061!1.60e-14!102;UBERON:0001474!3.95e-14!86;UBERON:0002405!4.23e-13!115;UBERON:0000468!8.14e-13!659;UBERON:0004765!3.74e-12!101;UBERON:0001434!3.74e-12!101;UBERON:0000926!1.25e-11!448;UBERON:0004120!1.25e-11!448;UBERON:0006603!1.25e-11!448;UBERON:0000467!7.25e-11!625;UBERON:0000480!9.39e-11!626;UBERON:0002204!3.13e-10!167;UBERON:0002050!3.86e-09!605;UBERON:0005423!3.86e-09!605;UBERON:0000923!4.32e-09!604;UBERON:0005291!4.32e-09!604;UBERON:0006598!4.32e-09!604;UBERON:0002532!4.32e-09!604;UBERON:0000922!5.28e-09!612;UBERON:0000062!9.30e-09!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.65e-21,76;UBERON:0000926,5.35e-18,315;UBERON:0004120,5.35e-18,315;UBERON:0006603,5.35e-18,315;UBERON:0002405,6.36e-18,93;UBERON:0002193,6.69e-18,108;UBERON:0004765,1.41e-17,90;UBERON:0002390,2.30e-17,98;UBERON:0003061,2.30e-17,98;UBERON:0003081,2.58e-17,203;UBERON:0001474,3.32e-17,82;UBERON:0001434,9.03e-16,100;UBERON:0002204,5.39e-11,167;UBERON:0000923,3.34e-07,560;UBERON:0010316,3.34e-07,560;UBERON:0005291,3.34e-07,560;UBERON:0006598,3.34e-07,560;UBERON:0010317,3.34e-07,560;UBERON:0002532,3.34e-07,560;UBERON:0002050,4.60e-07,564 | |||
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| ||
|short_description=p8@PSAP | |||
}} | }} |
Latest revision as of 03:59, 19 September 2015
Short description: | p8@PSAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PSAP_5end |
Coexpression cluster: | C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate |
Association with transcript: | -474bp_to_ENST00000495196_5end |
EntrezGene: | PSAP |
HGNC: | 9498 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.39e-31 | 48 |
phagocyte | 1.39e-31 | 48 |
monopoietic cell | 1.60e-30 | 59 |
monocyte | 1.60e-30 | 59 |
monoblast | 1.60e-30 | 59 |
promonocyte | 1.60e-30 | 59 |
macrophage dendritic cell progenitor | 1.91e-28 | 61 |
myeloid leukocyte | 1.23e-27 | 72 |
classical monocyte | 2.52e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.52e-27 | 42 |
myeloid lineage restricted progenitor cell | 4.65e-25 | 66 |
granulocyte monocyte progenitor cell | 3.28e-24 | 67 |
myeloid cell | 6.29e-09 | 108 |
common myeloid progenitor | 6.29e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.65e-21 | 76 |
mesoderm | 5.35e-18 | 315 |
mesoderm-derived structure | 5.35e-18 | 315 |
presumptive mesoderm | 5.35e-18 | 315 |
immune system | 6.36e-18 | 93 |
hemolymphoid system | 6.69e-18 | 108 |
skeletal element | 1.41e-17 | 90 |
hematopoietic system | 2.30e-17 | 98 |
blood island | 2.30e-17 | 98 |
lateral plate mesoderm | 2.58e-17 | 203 |
bone element | 3.32e-17 | 82 |
skeletal system | 9.03e-16 | 100 |
musculoskeletal system | 5.39e-11 | 167 |
germ layer | 3.34e-07 | 560 |
germ layer / neural crest | 3.34e-07 | 560 |
embryonic tissue | 3.34e-07 | 560 |
presumptive structure | 3.34e-07 | 560 |
germ layer / neural crest derived structure | 3.34e-07 | 560 |
epiblast (generic) | 3.34e-07 | 560 |
embryonic structure | 4.60e-07 | 564 |