FFCP PHASE1:Hg19::chr12:6898749..6898763,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=920 | |EntrezGene=920 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1678 | |HGNC=1678 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYA9 | |UniProt=F5GYA9 | ||
|association_with_transcript=15bp_to_ENST00000539492_5end | |association_with_transcript=15bp_to_ENST00000539492_5end | ||
|cluster_id=chr12:6898749..6898763,+ | |||
|coexpression_cluster_id=C2234 | |||
|description=CAGE_peak_2_at_CD4_5end | |description=CAGE_peak_2_at_CD4_5end | ||
|id=chr12:6898749..6898763,+ | |id=chr12:6898749..6898763,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.80e-49!172;CL:0000566!1.80e-49!172;CL:0000738!5.04e-48!140;CL:0000988!5.83e-48!182;CL:0002032!9.24e-46!165;CL:0000837!9.24e-46!165;CL:0000763!3.44e-45!112;CL:0000049!3.44e-45!112;CL:0000766!2.69e-44!76;CL:0000557!4.88e-42!71;CL:0002009!2.13e-40!65;CL:0000839!2.18e-39!70;CL:0002031!5.01e-39!124;CL:0002194!9.41e-39!63;CL:0000576!9.41e-39!63;CL:0000040!9.41e-39!63;CL:0000559!9.41e-39!63;CL:0002087!1.36e-37!119;CL:0002057!3.86e-34!42;CL:0000860!1.94e-30!45;CL:0002393!1.25e-08!9;CL:0002397!1.25e-08!9;CL:0000084!5.22e-08!25;CL:0000827!5.22e-08!25;CL:0000134!1.34e-07!358;CL:0000451!3.65e-07!10;CL:0002320!8.46e-07!365;CL:0000791!8.75e-07!18;CL:0000789!8.75e-07!18;CL:0002420!8.75e-07!18;CL:0002419!8.75e-07!18;CL:0000790!8.75e-07!18 | |ontology_enrichment_celltype=CL:0000037!1.80e-49!172;CL:0000566!1.80e-49!172;CL:0000738!5.04e-48!140;CL:0000988!5.83e-48!182;CL:0002032!9.24e-46!165;CL:0000837!9.24e-46!165;CL:0000763!3.44e-45!112;CL:0000049!3.44e-45!112;CL:0000766!2.69e-44!76;CL:0000557!4.88e-42!71;CL:0002009!2.13e-40!65;CL:0000839!2.18e-39!70;CL:0002031!5.01e-39!124;CL:0002194!9.41e-39!63;CL:0000576!9.41e-39!63;CL:0000040!9.41e-39!63;CL:0000559!9.41e-39!63;CL:0002087!1.36e-37!119;CL:0002057!3.86e-34!42;CL:0000860!1.94e-30!45;CL:0002393!1.25e-08!9;CL:0002397!1.25e-08!9;CL:0000084!5.22e-08!25;CL:0000827!5.22e-08!25;CL:0000134!1.34e-07!358;CL:0000451!3.65e-07!10;CL:0002320!8.46e-07!365;CL:0000791!8.75e-07!18;CL:0000789!8.75e-07!18;CL:0002420!8.75e-07!18;CL:0002419!8.75e-07!18;CL:0000790!8.75e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000576;3.17e-34;48!CL:0000860;3.86e-34;33!CL:0002057;3.86e-34;33!CL:0000473;5.48e-34;39!CL:0000234;5.48e-34;39!CL:0000766;2.29e-27;69!CL:0000763;1.99e-17;100!CL:0002087;7.48e-16;104!CL:0000738;1.44e-14;136!CL:0000084;4.69e-12;25!CL:0000988;1.95e-11;177!CL:0000791;6.73e-10;18!CL:0000789;6.73e-10;18!CL:0002419;6.73e-10;18!CL:0002393;3.89e-08;6!CL:0002397;3.89e-08;6!CL:0000235;7.23e-08;6!CL:0000624;1.27e-07;6!CL:0000840;3.04e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.69e-67,136;CL:0000557,1.81e-66,67;CL:0000766,3.27e-66,72;CL:0000037,1.08e-65,168;CL:0000988,1.38e-64,177;CL:0002009,4.37e-64,61;CL:0000839,9.75e-63,66;CL:0002194,1.08e-61,59;CL:0000576,1.08e-61,59;CL:0000040,1.08e-61,59;CL:0000559,1.08e-61,59;CL:0002032,2.79e-60,161;CL:0000837,2.79e-60,161;CL:0002031,9.72e-60,120;CL:0000763,5.58e-59,108;CL:0000049,5.58e-59,108;CL:0002087,1.81e-57,115;CL:0000473,1.22e-54,48;CL:0000234,1.22e-54,48;CL:0000860,5.60e-48,42;CL:0002057,5.60e-48,42;CL:0000134,1.57e-13,354;CL:0002320,1.11e-12,361;CL:0000084,5.97e-12,25;CL:0000827,5.97e-12,25;CL:0002393,1.30e-11,9;CL:0002397,1.30e-11,9;CL:0000219,1.53e-10,386;CL:0000791,7.43e-10,18;CL:0000789,7.43e-10,18;CL:0002420,7.43e-10,18;CL:0002419,7.43e-10,18;CL:0000790,7.43e-10,18;CL:0000235,7.25e-08,6;CL:0000624,1.25e-07,6;CL:0000840,3.04e-07,5;CL:0001029,3.04e-07,5;CL:0000048,9.59e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.71e-34;42!CL:0000049;1.55e-15;108!CL:0000790;6.73e-10;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.01e-49!102;UBERON:0003061!3.01e-49!102;UBERON:0002193!6.33e-44!112;UBERON:0002371!1.51e-36!80;UBERON:0001474!7.10e-32!86;UBERON:0002405!7.18e-30!115;UBERON:0004765!6.69e-25!101;UBERON:0001434!6.69e-25!101;UBERON:0007023!1.92e-21!115;UBERON:0003081!6.92e-14!216;UBERON:0000178!3.85e-11!15;UBERON:0000179!3.85e-11!15;UBERON:0000463!3.85e-11!15;UBERON:0002204!1.08e-08!167 | |ontology_enrichment_uberon=UBERON:0002390!3.01e-49!102;UBERON:0003061!3.01e-49!102;UBERON:0002193!6.33e-44!112;UBERON:0002371!1.51e-36!80;UBERON:0001474!7.10e-32!86;UBERON:0002405!7.18e-30!115;UBERON:0004765!6.69e-25!101;UBERON:0001434!6.69e-25!101;UBERON:0007023!1.92e-21!115;UBERON:0003081!6.92e-14!216;UBERON:0000178!3.85e-11!15;UBERON:0000179!3.85e-11!15;UBERON:0000463!3.85e-11!15;UBERON:0002204!1.08e-08!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.40e-15;15!UBERON:0000179;3.40e-15;15!UBERON:0000463;3.40e-15;15!UBERON:0002390;2.43e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.30e-74,98;UBERON:0003061,1.30e-74,98;UBERON:0002193,2.25e-68,108;UBERON:0002371,9.47e-56,76;UBERON:0002405,2.20e-53,93;UBERON:0001474,6.35e-50,82;UBERON:0004765,2.20e-43,90;UBERON:0001434,1.03e-36,100;UBERON:0003081,6.42e-27,203;UBERON:0002204,8.73e-16,167;UBERON:0000178,3.53e-15,15;UBERON:0000179,3.53e-15,15;UBERON:0000463,3.53e-15,15;UBERON:0002384,5.83e-12,371;UBERON:0000926,1.38e-09,315;UBERON:0004120,1.38e-09,315;UBERON:0006603,1.38e-09,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9478425202584,9.59573495243032,20.280912154406,0,0,0,0,0,0,12.7418943962332,14.4392002178502,11.9355978893719,37.6177996723073,30.1221109397651,33.2272482248101,13.8128326840586,16.6265415223076,13.5847074265177,12.551167992907,18.913722849004,13.9367866902797,20.1384674625505,17.1627673374497,16.0807916324238,15.1688099524112,16.1371170895957,12.1883837934908,14.306417805238,18.5576182039335,12.5845151289247,16.2224462956578,14.7627352455003,14.0654167675789,20.4507806115764,17.7522655283252,17.9014395223732,21.1852744198866,15.8867862913519,13.0792672289071,14.5724225848911,19.8163508999677,17.5922964211144,14.5295880632009,19.5187147073409,12.9749578850763,26.8294213616166,29.339393395176,20.7562059053292,33.586260712802,38.1449307817426,19.4477959903467,16.8157518807337,26.2570013902799,16.4397738388171,0,1.09227722252426,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,1.05353633910031,16.7203304596758,12.5763444079733,19.5321424049534,8.69369776031526,11.7332015988093,12.7830907548378,17.534405556712,13.8148966537615,11.1950244840438,11.5197625183483,9.74893909554056,10.247305578054,8.71397628651184,10.8529017038426,11.0540007114339,19.4168067442485,32.9196170219774,31.0347360584067,40.7688542839409,13.3705024383128,17.2449222120865,17.1813722741315,17.7113784413652,9.2383970153988,3.25541726928209,2.85135613334512,12.4977348834551,12.4147012819786,13.742379920758,10.6549763419808,3.28451198768419,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.916853528483988,0,0,8.43823223502177,6.09454080547435,7.57860374957531,17.40981557429,14.2998727695032,14.486842551853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0.738155454624648,0,0.8231480226628,0,0,0.982827216677626,1.18157981336281,4.85609409356116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.898181566128,3.7440682422278,13.2281734436968,0,0,0,0,0,0,4.43396914106349,3.78608266256872,2.48793738648926,2.88239906833923,5.6809095041871,0.126995788584338,0.381988425558278,2.34434894420094,0,0.102827492703324,1.20137223137567,0.571652865261156,0.560655421726804,0.43596006883328,0.22001485746285,0,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0,0,0,0,0,20.6760427090024,19.0857694744208,14.7583757638122,0,0,0,0,0,0,0,4.3346767244424,4.09692392233083,5.51875056002918,0,0,0,0.335032530668698,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.8497305077972,12.0799952458425,13.2342171676271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,1.07001315444375,0,0,0,0,0,0,0,0,1.88287601553558,0,0,0,0,15.7308758861972,15.2927441428475,12.5322381178316,12.1498205483472,9.46133228098247,16.2118327798179,16.7409745543816,11.8968776444141,0,0,0,0,0,22.7653898714925,0,0.199579371432817,4.5961288831768,3.81012448902989,3.89546328329467,0,2.73881614839831,7.83399478865116,0,1.01575066680962,0.321176150207399,1.61439765752838,3.83261613921294,3.43505344755765,3.6868891717015,3.13146551049382,3.67068111766199,4.68931428964897,0.278406173895242,3.69262196843137,2.43410110628385,0,0,0,1.90460633053462,0,5.34928244531896,0,0.23874448473769,0.593929361665277,0,0,0.984685914873589,0,0,0,1.19548792950642,1.93398740871803,0,0,2.58478091468246,0,0,0,1.53471711068062,0.394573622547734,7.18449277040819,0,0,0.371072392647405,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.482385754501632,0,0.110579259931225,0.295547618953547,0.438770794307945,0,0,0.769502585037971,0,0,0,0,0.638002319463839,0,0.533034776018635,1.02193298195737,0.784901281975124,1.99454018280188,0,0,0,0,0.317873157960757,0,0,0,0,0,0.707660516026713,0,3.55825354416746,3.95404604628809,4.80340967725095,1.28062152663286,2.40773294189637,1.1713222286267,0,0,0,0.789168805698781,2.41981432097328,0,5.62360558693543,0,0,0,0,0,0,0,0,0.173559738335131,0,0,2.09672001890436,0,0,0,0,0.581934098930517,0,0.90392296312213,0,0,0.569797163602908,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.547621515567972,0,0,3.6804229599104,1.39641200636127,1.14580212005842,0.717873024576814,0,0.429226048136571,0.223171457441873,0.403100834920358,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0.681017030557878,0,0,0,14.848276842399,18.5712469093908,0.546746009922222,0,0.630445658393585,0.577000469484979,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0.410462603746695,0,0,2.05173127149315,0,0.646414781807753,0.66116300871345,0,0,2.77647272676006,2.98688179689365,0.4142390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| ||
|short_description=p2@CD4 | |short_description=p2@CD4 | ||
}} | }} |
Latest revision as of 03:26, 20 September 2015
Short description: | p2@CD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD4_5end |
Coexpression cluster: | C2234_Monocytederived_Dendritic_CD14_Macrophage_CD4_CD14CD16_acute |
Association with transcript: | 15bp_to_ENST00000539492_5end |
EntrezGene: | CD4 |
HGNC: | 1678 |
UniProt: | F5GYA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.30e-74 | 98 |
blood island | 1.30e-74 | 98 |
hemolymphoid system | 2.25e-68 | 108 |
bone marrow | 9.47e-56 | 76 |
immune system | 2.20e-53 | 93 |
bone element | 6.35e-50 | 82 |
skeletal element | 2.20e-43 | 90 |
skeletal system | 1.03e-36 | 100 |
lateral plate mesoderm | 6.42e-27 | 203 |
musculoskeletal system | 8.73e-16 | 167 |
blood | 3.53e-15 | 15 |
haemolymphatic fluid | 3.53e-15 | 15 |
organism substance | 3.53e-15 | 15 |
connective tissue | 5.83e-12 | 371 |
mesoderm | 1.38e-09 | 315 |
mesoderm-derived structure | 1.38e-09 | 315 |
presumptive mesoderm | 1.38e-09 | 315 |