FFCP PHASE1:Mm9::chr2:147012125..147012149,-: Difference between revisions
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{{FFCP|EntrezGene=18088|HGNC=|MCL_coexpression_id=141|UniProt=P42586,Q8BRS9,Q3URZ4|association_with_transcript=0bp_to_ENSMUST00000067075,ENSMUST00000109970,NM_001077632,NM_010919,uc008mst.1,uc008msu.1_5end|description=CAGE_peak_1_at_Nkx2-2_5end|id=chr2:147012125..147012149,-|ontology_enrichment_celltype=CL:0000117!9.00e-13!23;CL:0000337!9.00e-13!23;CL:0002319!1.70e-09!43;CL:0000221!4.71e-09!44;CL:0000133!4.71e-09!44;CL:0000055!7.79e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-18,23;CL:0000337,1.21e-18,23;CL:0002319,2.39e-14,43;CL:0000221,6.99e-14,44;CL:0000133,6.99e-14,44;CL:0000540,1.52e-11,33;CL:0000047,1.52e-11,33;CL:0000031,1.52e-11,33;CL:0000404,1.52e-11,33;CL:0000393,4.54e-09,39;CL:0000211,4.54e-09,39;CL:0002321,2.70e-07,70;CL:0002613,6.50e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.90e-20!75;UBERON:0001016!1.90e-20!75;UBERON:0001017!1.16e-19!73;UBERON:0005743!1.16e-19!73;UBERON:0001049!5.31e-18!52;UBERON:0005068!5.31e-18!52;UBERON:0006241!5.31e-18!52;UBERON:0007135!5.31e-18!52;UBERON:0000955!1.17e-15!50;UBERON:0006238!1.17e-15!50;UBERON:0002616!3.18e-15!49;UBERON:0002020!6.14e-13!34;UBERON:0004121!6.12e-11!102;UBERON:0000924!6.12e-11!102;UBERON:0006601!6.12e-11!102;UBERON:0000033!9.48e-11!63;UBERON:0003076!1.33e-10!12;UBERON:0003057!1.33e-10!12;UBERON:0002346!2.59e-10!71;UBERON:0003075!2.59e-10!71;UBERON:0007284!2.59e-10!71;UBERON:0003080!9.78e-10!40;UBERON:0002780!2.74e-09!39;UBERON:0001890!2.74e-09!39;UBERON:0006240!2.74e-09!39;UBERON:0002791!3.97e-09!29;UBERON:0003528!3.97e-09!29;UBERON:0001893!3.97e-09!29;UBERON:0001264!9.31e-09!12;UBERON:0003922!9.31e-09!12;UBERON:0002114!9.31e-09!12;UBERON:0003923!9.31e-09!12;UBERON:0003924!9.31e-09!12;UBERON:0003921!9.31e-09!12;UBERON:0001045!9.16e-08!13;UBERON:0003056!2.89e-07!49;UBERON:0002420!3.91e-07!8;UBERON:0007245!3.91e-07!8;UBERON:0010009!3.91e-07!8;UBERON:0010011!3.91e-07!8;UBERON:0000454!3.91e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.68e-23,73;UBERON:0001016,5.76e-22,75;UBERON:0000073,5.20e-20,54;UBERON:0003076,2.73e-18,12;UBERON:0003057,2.73e-18,12;UBERON:0001049,4.76e-18,52;UBERON:0005068,4.76e-18,52;UBERON:0006241,4.76e-18,52;UBERON:0007135,4.76e-18,52;UBERON:0001264,2.04e-15,12;UBERON:0004121,2.91e-15,95;UBERON:0000924,2.91e-15,95;UBERON:0006601,2.91e-15,95;UBERON:0002346,3.04e-13,64;UBERON:0003075,3.04e-13,64;UBERON:0007284,3.04e-13,64;UBERON:0002616,2.53e-11,46;UBERON:0002240,4.72e-11,6;UBERON:0005174,4.72e-11,6;UBERON:0001137,4.72e-11,6;UBERON:0000955,5.80e-11,47;UBERON:0006238,5.80e-11,47;UBERON:0010371,1.05e-10,73;UBERON:0002020,2.94e-10,34;UBERON:0002420,7.06e-10,8;UBERON:0007245,7.06e-10,8;UBERON:0010009,7.06e-10,8;UBERON:0010011,7.06e-10,8;UBERON:0000454,7.06e-10,8;UBERON:0001948,1.32e-09,5;UBERON:0002315,1.32e-09,5;UBERON:0004733,8.08e-09,6;UBERON:0004732,8.08e-09,6;UBERON:0002028,8.08e-09,6;UBERON:0007277,8.08e-09,6;UBERON:0002075,9.51e-09,19;UBERON:0010314,4.69e-07,92;UBERON:0002780,7.41e-07,39;UBERON:0001890,7.41e-07,39;UBERON:0006240,7.41e-07,39|phase1_expression=0,0,0,0,0,0.33575854382378,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0,0,0,1.56478268869608,1.09012578190223,0,0,0.279972843250725,4.31257693094915,0,0,0,0,0,0,3.23706337375356,6.34789175126439,6.97214543856797,1.0165335962074,0,0,0,0,5.99200221036809,8.4528027170742,0,0,0,9.99778445413313,7.95126747425809,0.244981598429908,0.383381884072945,0.919218786610021,2.20231761998777,1.53224805702225,2.15049146558741,17.4089899803856,11.3444678066988,18.7528813400434,1.3959149950069,2.25105044012672,1.98637722109853,7.66034322231536,6.26435395516053,2.79599168737951,0.302904773332736,0.68014404096107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,1.46390398505774,2.93225389538837,0,0,0,0,0.898743836428936,1.37250180845588,0.502617408451458,0.869121600961382,1.27857728665165,3.94797284663164,2.27137768294861,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.308713837137853,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0.474529061544512,0,0.251335208800269,0.596869416123452,0.779856348476481,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72936002979246,2.69586879162067,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,1.32745138339963,14.3240575331439,4.83717691143602,7.16699303072413,6.79194353625777,3.3817866273832,2.06742634534577,6.18007340111759,4.27796854061666,2.21225730555071,0,1.03135543248187,0,4.68158844481407,1.55230420539305,0,0,0,0.329098041204242,0,0,0,0,0,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,1.21991680276109,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,1.84130094602871,1.14579102687879,2.06223818812425,0.685082519770642,0,0.675022500231806,1.80128481289688,0.906284817968409,0.51776031175182,2.80225838477277,3.19219898720825,1.36586884603307,0.243106717068294,1.25767897576789,0.919217542250071,0.44449345560323,0.618105171716683,0.320919209591815,0.758091635291392,0.25347929989024,0.565879024158229,0.561849044819294,0.448176066834085,0.287177344778066,0.476293691283074,0.231768651889711,0.578727661391115,0,0.441596760403192,0,0.354951612318675,0.238436189947321,0.726732083161643,0,0.507687647350059,0.548783918618318,0.526139422875686,0.407412341537585,0,0.118635018124174,0.29551344712669,1.22769312950907,0.309873682371932,0,0.749431733813838,0.233931608445408,0.859484216193193,0.57386499620653,0.882365676478062,0.695603506861264|short_description=p1@Nkx2-2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18088 | |||
|HGNC= | |||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=P42586,Q8BRS9,Q3URZ4 | |||
|association_with_transcript=0bp_to_ENSMUST00000067075,ENSMUST00000109970,NM_001077632,NM_010919,uc008mst.1,uc008msu.1_5end | |||
|cluster_id=chr2:147012125..147012149,- | |||
|description=CAGE_peak_1_at_Nkx2-2_5end | |||
|id=chr2:147012125..147012149,- | |||
|ontology_enrichment_celltype=CL:0000117!9.00e-13!23;CL:0000337!9.00e-13!23;CL:0002319!1.70e-09!43;CL:0000221!4.71e-09!44;CL:0000133!4.71e-09!44;CL:0000055!7.79e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-18,23;CL:0000337,1.21e-18,23;CL:0002319,2.39e-14,43;CL:0000221,6.99e-14,44;CL:0000133,6.99e-14,44;CL:0000540,1.52e-11,33;CL:0000047,1.52e-11,33;CL:0000031,1.52e-11,33;CL:0000404,1.52e-11,33;CL:0000393,4.54e-09,39;CL:0000211,4.54e-09,39;CL:0002321,2.70e-07,70;CL:0002613,6.50e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.90e-20!75;UBERON:0001016!1.90e-20!75;UBERON:0001017!1.16e-19!73;UBERON:0005743!1.16e-19!73;UBERON:0001049!5.31e-18!52;UBERON:0005068!5.31e-18!52;UBERON:0006241!5.31e-18!52;UBERON:0007135!5.31e-18!52;UBERON:0000955!1.17e-15!50;UBERON:0006238!1.17e-15!50;UBERON:0002616!3.18e-15!49;UBERON:0002020!6.14e-13!34;UBERON:0004121!6.12e-11!102;UBERON:0000924!6.12e-11!102;UBERON:0006601!6.12e-11!102;UBERON:0000033!9.48e-11!63;UBERON:0003076!1.33e-10!12;UBERON:0003057!1.33e-10!12;UBERON:0002346!2.59e-10!71;UBERON:0003075!2.59e-10!71;UBERON:0007284!2.59e-10!71;UBERON:0003080!9.78e-10!40;UBERON:0002780!2.74e-09!39;UBERON:0001890!2.74e-09!39;UBERON:0006240!2.74e-09!39;UBERON:0002791!3.97e-09!29;UBERON:0003528!3.97e-09!29;UBERON:0001893!3.97e-09!29;UBERON:0001264!9.31e-09!12;UBERON:0003922!9.31e-09!12;UBERON:0002114!9.31e-09!12;UBERON:0003923!9.31e-09!12;UBERON:0003924!9.31e-09!12;UBERON:0003921!9.31e-09!12;UBERON:0001045!9.16e-08!13;UBERON:0003056!2.89e-07!49;UBERON:0002420!3.91e-07!8;UBERON:0007245!3.91e-07!8;UBERON:0010009!3.91e-07!8;UBERON:0010011!3.91e-07!8;UBERON:0000454!3.91e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.68e-23,73;UBERON:0001016,5.76e-22,75;UBERON:0000073,5.20e-20,54;UBERON:0003076,2.73e-18,12;UBERON:0003057,2.73e-18,12;UBERON:0001049,4.76e-18,52;UBERON:0005068,4.76e-18,52;UBERON:0006241,4.76e-18,52;UBERON:0007135,4.76e-18,52;UBERON:0001264,2.04e-15,12;UBERON:0004121,2.91e-15,95;UBERON:0000924,2.91e-15,95;UBERON:0006601,2.91e-15,95;UBERON:0002346,3.04e-13,64;UBERON:0003075,3.04e-13,64;UBERON:0007284,3.04e-13,64;UBERON:0002616,2.53e-11,46;UBERON:0002240,4.72e-11,6;UBERON:0005174,4.72e-11,6;UBERON:0001137,4.72e-11,6;UBERON:0000955,5.80e-11,47;UBERON:0006238,5.80e-11,47;UBERON:0010371,1.05e-10,73;UBERON:0002020,2.94e-10,34;UBERON:0002420,7.06e-10,8;UBERON:0007245,7.06e-10,8;UBERON:0010009,7.06e-10,8;UBERON:0010011,7.06e-10,8;UBERON:0000454,7.06e-10,8;UBERON:0001948,1.32e-09,5;UBERON:0002315,1.32e-09,5;UBERON:0004733,8.08e-09,6;UBERON:0004732,8.08e-09,6;UBERON:0002028,8.08e-09,6;UBERON:0007277,8.08e-09,6;UBERON:0002075,9.51e-09,19;UBERON:0010314,4.69e-07,92;UBERON:0002780,7.41e-07,39;UBERON:0001890,7.41e-07,39;UBERON:0006240,7.41e-07,39 | |||
|phase1_expression=0,0,0,0,0,0.33575854382378,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0,0,0,1.56478268869608,1.09012578190223,0,0,0.279972843250725,4.31257693094915,0,0,0,0,0,0,3.23706337375356,6.34789175126439,6.97214543856797,1.0165335962074,0,0,0,0,5.99200221036809,8.4528027170742,0,0,0,9.99778445413313,7.95126747425809,0.244981598429908,0.383381884072945,0.919218786610021,2.20231761998777,1.53224805702225,2.15049146558741,17.4089899803856,11.3444678066988,18.7528813400434,1.3959149950069,2.25105044012672,1.98637722109853,7.66034322231536,6.26435395516053,2.79599168737951,0.302904773332736,0.68014404096107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,1.46390398505774,2.93225389538837,0,0,0,0,0.898743836428936,1.37250180845588,0.502617408451458,0.869121600961382,1.27857728665165,3.94797284663164,2.27137768294861,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.308713837137853,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0.474529061544512,0,0.251335208800269,0.596869416123452,0.779856348476481,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72936002979246,2.69586879162067,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,1.32745138339963,14.3240575331439,4.83717691143602,7.16699303072413,6.79194353625777,3.3817866273832,2.06742634534577,6.18007340111759,4.27796854061666,2.21225730555071,0,1.03135543248187,0,4.68158844481407,1.55230420539305,0,0,0,0.329098041204242,0,0,0,0,0,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,1.21991680276109,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,1.84130094602871,1.14579102687879,2.06223818812425,0.685082519770642,0,0.675022500231806,1.80128481289688,0.906284817968409,0.51776031175182,2.80225838477277,3.19219898720825,1.36586884603307,0.243106717068294,1.25767897576789,0.919217542250071,0.44449345560323,0.618105171716683,0.320919209591815,0.758091635291392,0.25347929989024,0.565879024158229,0.561849044819294,0.448176066834085,0.287177344778066,0.476293691283074,0.231768651889711,0.578727661391115,0,0.441596760403192,0,0.354951612318675,0.238436189947321,0.726732083161643,0,0.507687647350059,0.548783918618318,0.526139422875686,0.407412341537585,0,0.118635018124174,0.29551344712669,1.22769312950907,0.309873682371932,0,0.749431733813838,0.233931608445408,0.859484216193193,0.57386499620653,0.882365676478062,0.695603506861264 | |||
|short_description=p1@Nkx2-2 | |||
}} |
Latest revision as of 20:51, 25 September 2015
Short description: | p1@Nkx2-2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nkx2-2_5end |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | 0bp_to_ENSMUST00000067075, ENSMUST00000109970, NM_001077632, NM_010919, uc008mst.1, uc008msu.1_5end |
EntrezGene: | Nkx2-2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.21e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.21e-18 | 23 |
neural cell | 2.39e-14 | 43 |
ectodermal cell | 6.99e-14 | 44 |
neurectodermal cell | 6.99e-14 | 44 |
neuron | 1.52e-11 | 33 |
neuronal stem cell | 1.52e-11 | 33 |
neuroblast | 1.52e-11 | 33 |
electrically signaling cell | 1.52e-11 | 33 |
electrically responsive cell | 4.54e-09 | 39 |
electrically active cell | 4.54e-09 | 39 |
embryonic cell | 2.70e-07 | 70 |
striatum neuron | 6.50e-07 | 3 |