FFCP PHASE1:Mm9::chr15:78744346..78744357,+: Difference between revisions
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{{FFCP|EntrezGene=57028|HGNC=|MCL_coexpression_id=966|UniProt=P60487,Q6IS27|association_with_transcript=0bp_to_ENSMUST00000089378,NM_020271,uc007wru.1_5end|description=CAGE_peak_2_at_Pdxp_5end|id=chr15:78744346..78744357,+|ontology_enrichment_celltype=CL:0000540!1.42e-15!33;CL:0000047!1.42e-15!33;CL:0000031!1.42e-15!33;CL:0000404!1.42e-15!33;CL:0000117!1.86e-15!23;CL:0000337!1.86e-15!23;CL:0000221!7.38e-14!44;CL:0000133!7.38e-14!44;CL:0002319!1.88e-13!43;CL:0000393!9.10e-12!39;CL:0000211!9.10e-12!39;CL:0000055!5.76e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.91e-27,23;CL:0000337,1.91e-27,23;CL:0000540,1.70e-21,33;CL:0000047,1.70e-21,33;CL:0000031,1.70e-21,33;CL:0000404,1.70e-21,33;CL:0000221,4.30e-19,44;CL:0000133,4.30e-19,44;CL:0002319,2.22e-18,43;CL:0000393,8.02e-17,39;CL:0000211,8.02e-17,39;CL:0002321,1.48e-08,70;CL:0002609,7.10e-08,6;CL:0000723,5.82e-07,91;CL:0000048,5.82e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.18e-26!75;UBERON:0001016!1.18e-26!75;UBERON:0001017!1.19e-26!73;UBERON:0005743!1.19e-26!73;UBERON:0004121!1.43e-22!102;UBERON:0000924!1.43e-22!102;UBERON:0006601!1.43e-22!102;UBERON:0001049!9.39e-21!52;UBERON:0005068!9.39e-21!52;UBERON:0006241!9.39e-21!52;UBERON:0007135!9.39e-21!52;UBERON:0002346!2.75e-20!71;UBERON:0003075!2.75e-20!71;UBERON:0007284!2.75e-20!71;UBERON:0002020!9.96e-20!34;UBERON:0000955!1.03e-19!50;UBERON:0006238!1.03e-19!50;UBERON:0002616!4.40e-19!49;UBERON:0000033!6.17e-19!63;UBERON:0003056!4.02e-17!49;UBERON:0003080!6.30e-17!40;UBERON:0002791!1.23e-16!29;UBERON:0003528!1.23e-16!29;UBERON:0001893!1.23e-16!29;UBERON:0002780!2.53e-16!39;UBERON:0001890!2.53e-16!39;UBERON:0006240!2.53e-16!39;UBERON:0007811!2.61e-15!86;UBERON:0000153!1.35e-13!94;UBERON:0000956!2.38e-11!21;UBERON:0001869!2.38e-11!21;UBERON:0000203!2.38e-11!21;UBERON:0002619!3.07e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-39,73;UBERON:0001016,4.18e-38,75;UBERON:0000073,1.02e-36,54;UBERON:0001049,5.26e-34,52;UBERON:0005068,5.26e-34,52;UBERON:0006241,5.26e-34,52;UBERON:0007135,5.26e-34,52;UBERON:0002020,5.62e-33,34;UBERON:0002346,2.23e-29,64;UBERON:0003075,2.23e-29,64;UBERON:0007284,2.23e-29,64;UBERON:0004121,5.36e-29,95;UBERON:0000924,5.36e-29,95;UBERON:0006601,5.36e-29,95;UBERON:0000955,1.50e-28,47;UBERON:0006238,1.50e-28,47;UBERON:0002616,1.96e-27,46;UBERON:0003528,3.01e-27,29;UBERON:0002791,3.01e-27,29;UBERON:0001893,3.01e-27,29;UBERON:0010371,2.97e-25,73;UBERON:0003080,3.20e-25,40;UBERON:0002780,3.84e-24,39;UBERON:0001890,3.84e-24,39;UBERON:0006240,3.84e-24,39;UBERON:0003056,6.00e-20,49;UBERON:0010314,4.74e-18,92;UBERON:0000956,1.50e-17,21;UBERON:0001869,1.50e-17,21;UBERON:0000203,1.50e-17,21;UBERON:0002619,1.10e-13,17;UBERON:0002420,5.94e-11,8;UBERON:0007245,5.94e-11,8;UBERON:0010009,5.94e-11,8;UBERON:0010011,5.94e-11,8;UBERON:0000454,5.94e-11,8;UBERON:0000025,9.46e-10,114;UBERON:0003076,5.86e-09,12;UBERON:0003057,5.86e-09,12;UBERON:0004111,6.46e-09,122;UBERON:0002021,8.90e-09,10;UBERON:0000411,8.90e-09,10;UBERON:0001950,8.90e-09,10;UBERON:0002240,1.34e-07,6;UBERON:0005174,1.34e-07,6;UBERON:0001137,1.34e-07,6;UBERON:0000369,3.33e-07,5;UBERON:0002435,3.33e-07,5;UBERON:0000204,3.33e-07,5;UBERON:0010082,3.33e-07,5;UBERON:0001948,8.75e-07,5;UBERON:0002315,8.75e-07,5|phase1_expression=0.640595388419176,0,0,0,0,0,0.233612640595526,0.258246646883153,0,0.468129052643987,0.513653904676515,1.35612670292072,0,0.34968160967599,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0.42438965179803,0.935476191661768,0.595745707205312,1.04479915655574,0,0,0,0,0.215471232685889,0,0,0,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.550640256485045,0,0,0.439372365468944,1.1665793944457,0.279972843250725,0,0.167782606057736,0,0.336093799142464,0,0,0,5.86717736492834,4.23192783417626,3.80298842103708,0,0,0,0,0,2.09720077362883,1.92109152660777,3.31806759387129,4.05017814995072,2.94454945891935,4.85606673486466,6.18431914664518,3.1847607795888,5.07980996396653,6.43453150627015,3.30347642998166,5.61824287574826,5.37622866396852,4.2203612073662,5.94669683415663,3.64639359389732,4.4669279840221,7.31591393041184,6.26472815884921,4.41942878210502,2.98980529678116,1.86399445825301,0.454357159999104,0.529000920747499,0,0,0,0,0,0,0.421333260395256,0,0.259786004602869,0.35333957451034,1.40843419776681,0,0,0,0,0,0,0,0,0.445326417194474,0.520455980298408,0.304465478312141,0,0.60289056221049,0.352766121407114,0.125666591329675,0,0,0,0.485300549842228,0.220841518460394,0,0,3.80615036115011,4.1889341362691,0,0.359445373517761,1.79970819298022,0.127070227073065,4.04434726393021,3.66000482254901,8.16753288733619,2.60736480288415,3.06858548796397,4.36354893575076,1.94689515681309,0.101839363850316,0,0,0.841767423545896,0.780722657776222,0.459804208866946,0.360124259610698,0.60281927134286,0.816437989815934,0.896796041993948,1.40552586839593,0,0.646703978798527,0.378212160335639,0.17595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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=57028 | |||
|HGNC= | |||
|MCL_coexpression_id=966 | |||
|TSSclassifier=NA | |||
|UniProt=P60487,Q6IS27 | |||
|association_with_transcript=0bp_to_ENSMUST00000089378,NM_020271,uc007wru.1_5end | |||
|cluster_id=chr15:78744346..78744357,+ | |||
|description=CAGE_peak_2_at_Pdxp_5end | |||
|id=chr15:78744346..78744357,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.42e-15!33;CL:0000047!1.42e-15!33;CL:0000031!1.42e-15!33;CL:0000404!1.42e-15!33;CL:0000117!1.86e-15!23;CL:0000337!1.86e-15!23;CL:0000221!7.38e-14!44;CL:0000133!7.38e-14!44;CL:0002319!1.88e-13!43;CL:0000393!9.10e-12!39;CL:0000211!9.10e-12!39;CL:0000055!5.76e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.91e-27,23;CL:0000337,1.91e-27,23;CL:0000540,1.70e-21,33;CL:0000047,1.70e-21,33;CL:0000031,1.70e-21,33;CL:0000404,1.70e-21,33;CL:0000221,4.30e-19,44;CL:0000133,4.30e-19,44;CL:0002319,2.22e-18,43;CL:0000393,8.02e-17,39;CL:0000211,8.02e-17,39;CL:0002321,1.48e-08,70;CL:0002609,7.10e-08,6;CL:0000723,5.82e-07,91;CL:0000048,5.82e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.18e-26!75;UBERON:0001016!1.18e-26!75;UBERON:0001017!1.19e-26!73;UBERON:0005743!1.19e-26!73;UBERON:0004121!1.43e-22!102;UBERON:0000924!1.43e-22!102;UBERON:0006601!1.43e-22!102;UBERON:0001049!9.39e-21!52;UBERON:0005068!9.39e-21!52;UBERON:0006241!9.39e-21!52;UBERON:0007135!9.39e-21!52;UBERON:0002346!2.75e-20!71;UBERON:0003075!2.75e-20!71;UBERON:0007284!2.75e-20!71;UBERON:0002020!9.96e-20!34;UBERON:0000955!1.03e-19!50;UBERON:0006238!1.03e-19!50;UBERON:0002616!4.40e-19!49;UBERON:0000033!6.17e-19!63;UBERON:0003056!4.02e-17!49;UBERON:0003080!6.30e-17!40;UBERON:0002791!1.23e-16!29;UBERON:0003528!1.23e-16!29;UBERON:0001893!1.23e-16!29;UBERON:0002780!2.53e-16!39;UBERON:0001890!2.53e-16!39;UBERON:0006240!2.53e-16!39;UBERON:0007811!2.61e-15!86;UBERON:0000153!1.35e-13!94;UBERON:0000956!2.38e-11!21;UBERON:0001869!2.38e-11!21;UBERON:0000203!2.38e-11!21;UBERON:0002619!3.07e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-39,73;UBERON:0001016,4.18e-38,75;UBERON:0000073,1.02e-36,54;UBERON:0001049,5.26e-34,52;UBERON:0005068,5.26e-34,52;UBERON:0006241,5.26e-34,52;UBERON:0007135,5.26e-34,52;UBERON:0002020,5.62e-33,34;UBERON:0002346,2.23e-29,64;UBERON:0003075,2.23e-29,64;UBERON:0007284,2.23e-29,64;UBERON:0004121,5.36e-29,95;UBERON:0000924,5.36e-29,95;UBERON:0006601,5.36e-29,95;UBERON:0000955,1.50e-28,47;UBERON:0006238,1.50e-28,47;UBERON:0002616,1.96e-27,46;UBERON:0003528,3.01e-27,29;UBERON:0002791,3.01e-27,29;UBERON:0001893,3.01e-27,29;UBERON:0010371,2.97e-25,73;UBERON:0003080,3.20e-25,40;UBERON:0002780,3.84e-24,39;UBERON:0001890,3.84e-24,39;UBERON:0006240,3.84e-24,39;UBERON:0003056,6.00e-20,49;UBERON:0010314,4.74e-18,92;UBERON:0000956,1.50e-17,21;UBERON:0001869,1.50e-17,21;UBERON:0000203,1.50e-17,21;UBERON:0002619,1.10e-13,17;UBERON:0002420,5.94e-11,8;UBERON:0007245,5.94e-11,8;UBERON:0010009,5.94e-11,8;UBERON:0010011,5.94e-11,8;UBERON:0000454,5.94e-11,8;UBERON:0000025,9.46e-10,114;UBERON:0003076,5.86e-09,12;UBERON:0003057,5.86e-09,12;UBERON:0004111,6.46e-09,122;UBERON:0002021,8.90e-09,10;UBERON:0000411,8.90e-09,10;UBERON:0001950,8.90e-09,10;UBERON:0002240,1.34e-07,6;UBERON:0005174,1.34e-07,6;UBERON:0001137,1.34e-07,6;UBERON:0000369,3.33e-07,5;UBERON:0002435,3.33e-07,5;UBERON:0000204,3.33e-07,5;UBERON:0010082,3.33e-07,5;UBERON:0001948,8.75e-07,5;UBERON:0002315,8.75e-07,5 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0.233612640595526,0.258246646883153,0,0.468129052643987,0.513653904676515,1.35612670292072,0,0.34968160967599,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0.42438965179803,0.935476191661768,0.595745707205312,1.04479915655574,0,0,0,0,0.215471232685889,0,0,0,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.550640256485045,0,0,0.439372365468944,1.1665793944457,0.279972843250725,0,0.167782606057736,0,0.336093799142464,0,0,0,5.86717736492834,4.23192783417626,3.80298842103708,0,0,0,0,0,2.09720077362883,1.92109152660777,3.31806759387129,4.05017814995072,2.94454945891935,4.85606673486466,6.18431914664518,3.1847607795888,5.07980996396653,6.43453150627015,3.30347642998166,5.61824287574826,5.37622866396852,4.2203612073662,5.94669683415663,3.64639359389732,4.4669279840221,7.31591393041184,6.26472815884921,4.41942878210502,2.98980529678116,1.86399445825301,0.454357159999104,0.529000920747499,0,0,0,0,0,0,0.421333260395256,0,0.259786004602869,0.35333957451034,1.40843419776681,0,0,0,0,0,0,0,0,0.445326417194474,0.520455980298408,0.304465478312141,0,0.60289056221049,0.352766121407114,0.125666591329675,0,0,0,0.485300549842228,0.220841518460394,0,0,3.80615036115011,4.1889341362691,0,0.359445373517761,1.79970819298022,0.127070227073065,4.04434726393021,3.66000482254901,8.16753288733619,2.60736480288415,3.06858548796397,4.36354893575076,1.94689515681309,0.101839363850316,0,0,0.841767423545896,0.780722657776222,0.459804208866946,0.360124259610698,0.60281927134286,0.816437989815934,0.896796041993948,1.40552586839593,0,0.646703978798527,0.378212160335639,0.175951124163949,0.43839146485515,0,0,0.411564272815887,0.59710280045548,0,0.257347907114715,0.284163499395593,0.621377317606506,0.938104239924385,0.180062061461015,0.710234206755631,1.37734962223183,0.462801338662135,0,0.536546802799238,0.350296027101508,0,0.32833492815819,0,0,0,0,3.78521907415429,4.73361216944708,0,0,0.639864751605702,0.464473343720877,0.515469845288373,0.201683524623343,0,0.190225626112559,0,0.164698954724011,0.251335208800269,0,0,0,0,0,0.758671603812327,0.571242563048644,1.1270773567308,0.203651327845314,0.775809948670503,0.0701358198903186,0,0,0,0,0.296452627087149,0.500535317148282,0.393117990226406,0,0.608580364165509,0,0.25462585178142,0,0,0,1.43768206527355,0,0,0,0,0,0,0.947457058852424,0.325929952884052,0.169745085775188,0,0,0.714130922658041,0,0.157635144106191,0.44292937929755,0,0,0,0.144649058581512,0,0,0,0.275936746304732,2.24770825982909,1.75817529888305,0,0,0.315508219416257,1.56175497718655,1.72338718186239,0.477937595905104,0.445597348164788,0.566153061577665,1.61924280669958,0.292255857911312,0.790575555893047,4.17717711348349,0,0.890328018336276,0,0.164970122972535,1.32745138339963,0.242780636154981,0,0.188605079755898,0,0.307435147943927,0.516856586336442,0.727067458955011,0,0,0,0,0.340439605753788,0,1.03486947026204,0.857348140126369,0.177340233642274,0.713475270408282,0.329098041204242,1.2178597964584,0,0,0,0.16488625294148,0.645857706783622,0.180938774784468,0.477489376012546,0.164140899745061,0,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0.169978429993855,0.139951452323658,0.138199973804424,0,0.790839983952838,0.203319467126849,0.324016022465404,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,1.12738587736838,0.747582730219894,0.165458490457098,0.194451188344048,0,0.168956125490778,0.117357238645754,0.5208175393758,0.314578033277133,0,0,0,0.405450430580328,0.616265742988964,0.909445760844565,0.716106782669926,0.198681354781265,0.240390899039938,0.443068581523732,0.605798699688886,0.228620419965,0.504130925684203,0.584747284438515,0.481059208201647,0.350630706544707,0,1.55390167361845,0.62799699626633,0.671538465456314,0,0,0.549454872801795,0,0,4.51801474093653,2.30162618253588,5.72895513439397,5.499301834998,2.74033007908257,0.755393897389701,2.70009000092722,1.35096360967266,3.62513927187364,1.55328093525546,0.726511433089237,1.99512436700516,1.19513524027894,0.729320151204882,0,0.367687016900028,1.11123363900808,0.206035057238894,1.28367683836726,0.758091635291392,0.760437899670719,0.377252682772152,0.749132059759059,1.21647789569252,0.402048282689293,0.952587382566147,0.463537303779422,0.77163688185482,1.23625770240992,0.735994600671987,0.685738504770831,1.4198064492747,1.1921809497366,0.436039249896986,0.658765662907314,0.846146078916765,1.09756783723664,0.526139422875686,0.543216455383447,1.12228454331548,1.06771516311757,0.591026894253381,0.818462086339379,1.08455788830176,0.385813221962283,1.99848462350357,0.701794825336225,0.214871054048298,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p2@Pdxp | |||
}} |
Latest revision as of 02:32, 27 September 2015
Short description: | p2@Pdxp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pdxp_5end |
Coexpression cluster: | MCL_coexpression_mm9:966 |
Association with transcript: | 0bp_to_ENSMUST00000089378, NM_020271, uc007wru.1_5end |
EntrezGene: | Pdxp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.91e-27 | 23 |
neuroblast (sensu Vertebrata) | 1.91e-27 | 23 |
neuron | 1.70e-21 | 33 |
neuronal stem cell | 1.70e-21 | 33 |
neuroblast | 1.70e-21 | 33 |
electrically signaling cell | 1.70e-21 | 33 |
ectodermal cell | 4.30e-19 | 44 |
neurectodermal cell | 4.30e-19 | 44 |
neural cell | 2.22e-18 | 43 |
electrically responsive cell | 8.02e-17 | 39 |
electrically active cell | 8.02e-17 | 39 |
embryonic cell | 1.48e-08 | 70 |
neuron of cerebral cortex | 7.10e-08 | 6 |
somatic stem cell | 5.82e-07 | 91 |
multi fate stem cell | 5.82e-07 | 91 |